genome.fa.s20.2.7.7.80.10.50.1000.39.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Length:  58101237

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  39  of  199  ( 23844 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11988521--11988571	23	2.3	23	86	10	70	43	7	0	49	1.32
11988521--11988581	22	2.7	23	78	14	58	47	6	0	45	1.28
11988677--11988728	26	2.0	26	100	0	104	61	11	0	26	1.30
11988686--11988757	26	2.8	25	82	14	76	62	8	0	29	1.24
11994085--11994111	11	2.5	11	100	0	54	44	0	0	55	0.99
12003062--12003105	22	2.0	22	100	0	88	54	13	13	18	1.71
12004179--12004215	14	2.4	17	86	13	53	48	0	0	51	1.00
12004365--12004415	14	3.6	14	74	7	50	68	0	13	17	1.21
12004404--12004437	16	2.1	16	88	5	50	76	5	14	2	1.09
12005531--12005626	39	2.5	39	80	6	108	20	23	28	27	1.99
12011607--12012080	45	10.5	44	71	12	190	33	17	19	28	1.95
12011747--12012080	45	7.5	41	71	14	191	33	18	19	28	1.95
12011556--12011857	137	2.2	137	79	7	335	31	19	20	28	1.97
12011793--12012150	45	7.8	45	71	11	246	34	18	19	27	1.95
12011793--12012372	51	12.4	48	69	15	276	34	18	19	28	1.95
12011617--12012150	181	2.9	181	89	0	798	33	17	20	28	1.95
12012211--12012434	92	2.4	92	89	1	333	36	16	18	28	1.93
12018495--12018522	13	2.2	13	100	0	56	39	21	0	39	1.54
12022598--12022639	23	1.9	22	85	9	59	30	4	4	59	1.39
12022757--12022781	3	8.3	3	100	0	50	32	0	0	68	0.90
12026866--12028461	800	2.0	800	99	0	3138	30	19	17	32	1.95
12039624--12039973	125	2.8	124	94	0	612	29	16	21	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12040489--12040591	27	3.8	27	88	2	136	21	21	34	22	1.96
12040489--12040591	54	1.9	54	88	7	156	21	21	34	22	1.96
12040650--12040690	22	1.9	21	90	5	64	60	2	36	0	1.10
12043699--12043781	39	2.2	38	95	2	148	38	2	3	55	1.30
12043922--12044171	49	5.4	46	73	15	187	52	14	0	32	1.47
12043924--12044140	95	2.3	97	81	10	252	53	14	0	31	1.45
12043978--12044318	27	14.1	27	73	22	294	53	12	0	32	1.44
12043978--12044318	49	7.1	49	81	10	393	53	12	0	32	1.44
12044073--12044314	98	2.5	98	95	1	434	54	12	0	31	1.43
12044267--12044452	41	4.5	41	73	17	170	55	12	0	32	1.37
12044215--12044452	22	11.1	21	69	20	100	55	12	0	31	1.41
12044377--12044454	20	3.8	20	81	8	86	55	11	0	33	1.36
12044616--12044646	14	2.3	13	94	5	53	0	32	0	67	0.91
12044621--12044658	14	2.7	14	88	8	51	0	36	0	63	0.95
12044614--12044658	17	2.6	17	80	13	56	0	35	0	64	0.94
12044841--12044865	13	1.9	13	100	0	50	20	24	8	48	1.76
12047695--12047719	10	2.5	10	100	0	50	48	0	8	44	1.32
12047768--12047973	29	7.3	29	89	7	334	29	0	25	45	1.54
12048019--12048133	36	3.2	36	65	11	92	46	15	4	33	1.66
12048051--12048161	25	4.6	25	68	20	83	45	14	2	37	1.59
12047979--12048163	71	2.6	71	95	0	334	44	14	3	37	1.62
12048564--12048599	18	2.0	18	88	0	54	30	8	36	25	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12048655--12048691	13	2.9	13	96	4	67	10	24	40	24	1.87
12049032--12049062	15	2.1	15	100	0	62	35	38	6	19	1.77
12049278--12049302	7	3.6	7	100	0	50	60	12	0	28	1.32
12050313--12050352	21	1.9	21	84	0	53	62	0	0	37	0.95
12050305--12050369	31	2.2	30	94	5	114	63	0	0	36	0.95
12050393--12050476	29	3.1	29	62	22	74	41	0	28	29	1.56
12050370--12050484	51	2.3	51	96	0	212	41	0	30	27	1.56
12052445--12052492	23	2.1	23	84	7	62	60	0	2	37	1.09
12052715--12052804	10	9.4	10	72	7	62	33	1	3	62	1.19
12052724--12052814	19	4.8	19	76	12	80	34	1	2	62	1.14
12052785--12052830	20	2.3	21	81	11	60	41	0	0	58	0.98
12060135--12060203	31	2.2	31	84	5	86	39	13	8	39	1.75
12067407--12067435	12	2.4	12	100	0	58	34	6	0	58	1.25
12069469--12069515	19	2.5	19	86	6	60	27	19	8	44	1.79
12071054--12071213	40	4.3	39	82	15	219	36	3	0	60	1.12
12071102--12071169	31	2.2	31	97	0	127	39	2	0	57	1.14
12071056--12071226	71	2.4	70	89	8	258	38	2	0	59	1.13
12071104--12071226	11	11.9	11	70	18	86	40	2	0	56	1.12
12072262--12072320	6	9.8	6	71	14	50	77	0	22	0	0.76
12072264--12072321	5	11.0	5	82	14	64	77	0	22	0	0.77
12072239--12072320	37	2.2	36	83	8	103	75	1	19	3	1.02
12074602--12074810	44	4.8	43	69	8	125	29	20	24	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12074535--12074876	132	2.6	132	92	0	549	30	20	24	24	1.98
12076833--12076861	12	2.4	12	100	0	58	34	6	0	58	1.25
12108643--12108682	20	2.0	20	85	9	55	30	0	2	67	1.04
12108673--12108710	20	1.9	20	84	10	51	50	0	2	47	1.15
12110681--12110722	16	2.6	16	92	0	75	42	4	2	50	1.36
12111209--12111257	13	3.8	13	80	0	62	34	24	8	32	1.85
12118667--12118711	22	2.1	21	84	8	56	28	2	0	68	1.01
12127559--12127603	20	2.3	20	96	3	83	37	0	0	62	0.96
12127965--12128013	24	2.2	22	82	10	55	51	4	14	30	1.61
12131342--12131377	17	2.1	17	89	5	54	19	2	11	66	1.35
12133386--12133589	99	2.0	102	81	6	238	31	17	24	26	1.97
12133519--12134125	229	2.7	228	79	3	587	28	17	24	29	1.97
12133488--12134145	115	5.8	114	78	4	621	29	18	24	27	1.98
12134963--12135023	8	8.0	8	78	12	58	19	1	37	40	1.62
12134963--12135023	15	4.0	15	77	12	70	19	1	37	40	1.62
12134963--12135023	23	2.7	23	84	5	79	19	1	37	40	1.62
12135490--12135772	148	1.9	148	84	1	379	24	17	21	36	1.94
12135490--12135827	148	2.3	147	78	7	346	23	16	22	36	1.94
12136266--12136320	14	3.9	14	72	9	58	32	12	20	34	1.90
12136235--12136325	16	5.9	16	70	17	59	30	12	19	37	1.88
12137791--12137843	21	2.5	21	78	9	63	41	1	0	56	1.10
12137810--12137854	19	2.3	19	85	11	56	44	0	2	53	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12137912--12138206	12	25.1	12	67	23	114	48	15	0	35	1.50
12137879--12138171	94	3.1	95	87	5	439	49	15	0	34	1.50
12138088--12138210	9	13.7	9	68	24	57	44	18	0	35	1.56
12138100--12138161	11	5.9	11	73	19	53	43	17	1	37	1.59
12138100--12138180	31	2.5	32	78	10	92	44	17	1	37	1.57
12138018--12138211	84	2.4	79	81	8	194	46	15	0	36	1.50
12138137--12138210	26	3.0	25	86	11	109	43	16	0	40	1.48
12138008--12138216	26	8.9	24	68	20	106	47	15	0	36	1.50
12138584--12138654	21	3.4	21	90	0	106	32	19	45	2	1.65
12139065--12139162	49	2.0	49	92	4	162	37	20	20	21	1.94
12138971--12139179	42	4.8	42	81	11	242	35	21	21	22	1.96
12139319--12139362	22	2.0	22	90	0	70	50	27	13	9	1.72
12144553--12144624	32	2.3	32	95	2	128	40	0	22	37	1.54
12148938--12148990	21	2.5	21	90	0	79	32	37	7	22	1.82
12149507--12149769	129	2.0	130	95	0	474	32	15	17	34	1.91
12151822--12151940	30	3.8	30	75	16	105	29	15	25	29	1.96
12153384--12153427	21	2.2	19	84	8	52	54	4	0	40	1.21
12164643--12164687	19	2.3	20	81	14	58	24	4	0	71	1.05
12167291--12167350	29	2.1	29	84	6	77	61	10	3	25	1.43
12184040--12184389	124	2.8	124	93	1	594	28	17	22	32	1.96
12187286--12187316	5	6.0	5	96	3	53	3	58	38	0	1.15
12187839--12188077	115	2.1	116	93	0	408	43	10	7	38	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12188107--12188259	21	7.0	21	78	13	150	28	0	28	43	1.55
12188263--12188306	22	2.0	22	86	4	63	25	0	31	43	1.55
12188130--12188321	45	4.2	44	87	10	276	27	0	27	45	1.54
12188284--12188643	29	12.6	29	79	15	367	28	0	27	43	1.57
12188537--12188594	20	2.8	20	92	7	91	27	0	25	46	1.53
12188576--12188643	28	2.4	29	92	5	120	25	1	30	42	1.64
12188659--12188771	25	4.7	25	73	18	114	44	13	0	41	1.49
12188659--12188815	70	2.3	69	95	1	278	45	12	0	40	1.47
12188739--12188825	44	2.0	45	88	6	133	49	11	0	39	1.39
12189242--12189276	18	1.9	18	88	0	52	31	8	34	25	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199