genome.fa.s20.2.7.7.80.10.50.1000.148.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Length:  58101237

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  148  of  199  ( 23844 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43677064--43677090	13	2.1	13	100	0	54	55	14	0	29	1.40
43678443--43678492	26	1.9	26	91	0	82	38	18	22	22	1.94
43678678--43678817	27	5.3	27	82	3	167	20	16	21	42	1.89
43678678--43678817	53	2.6	53	84	4	176	20	16	21	42	1.89
43678694--43678819	26	4.7	27	81	13	95	20	15	22	42	1.89
43691213--43691260	11	4.2	12	86	7	55	70	0	6	22	1.09
43691220--43691258	6	6.7	6	88	5	53	71	0	2	25	0.98
43692095--43692128	14	2.3	15	85	5	52	52	0	8	38	1.33
43692471--43692516	7	6.0	7	81	18	56	56	0	0	43	0.99
43692466--43692517	16	3.2	16	100	0	104	53	0	0	46	1.00
43693594--43693643	21	2.4	21	82	0	55	36	34	2	28	1.69
43697118--43697211	9	10.1	9	73	9	64	27	5	1	65	1.20
43697118--43697204	18	4.7	18	79	11	79	26	5	1	66	1.21
43697115--43697224	26	4.1	25	73	13	69	30	4	1	63	1.24
43697316--43697506	89	2.1	89	80	1	213	34	7	19	38	1.81
43697666--43697714	21	2.3	21	86	6	64	69	2	0	28	1.00
43699504--43699708	43	4.8	43	79	5	209	30	29	16	23	1.96
43699951--43699981	15	2.1	15	93	0	53	19	32	0	48	1.49
43704407--43704435	12	2.4	12	100	0	58	75	0	0	24	0.80
43705019--43705065	14	3.4	13	80	13	58	31	51	0	17	1.46
43705019--43705065	21	2.2	20	85	10	67	31	51	0	17	1.46
43705186--43705224	7	5.6	7	81	0	51	33	46	0	20	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43705267--43705304	13	2.9	13	81	14	51	36	47	0	15	1.46
43705407--43705449	14	3.0	15	83	6	54	39	44	0	16	1.48
43705532--43705568	14	2.6	14	95	0	65	45	29	0	24	1.53
43705818--43705970	81	1.9	81	87	5	229	24	23	22	29	1.99
43705823--43706014	41	4.7	41	78	7	203	28	23	22	25	1.99
43706051--43706148	40	2.4	41	83	5	128	20	19	21	38	1.93
43711307--43711386	27	3.0	27	89	3	110	41	12	12	33	1.81
43711323--43711449	63	2.0	63	89	3	193	37	11	14	37	1.81
43711385--43711481	27	3.6	28	71	9	85	36	14	14	35	1.87
43723008--43723088	26	3.1	26	78	0	90	33	23	19	23	1.97
43723016--43723114	52	1.9	52	81	4	119	34	23	20	22	1.97
43723565--43723619	20	2.8	20	91	2	94	23	45	16	14	1.84
43724472--43724534	30	2.1	30	81	0	72	44	0	6	49	1.28
43724491--43724534	7	6.0	7	82	10	52	40	0	4	54	1.21
43724482--43724539	16	3.8	16	79	9	66	43	0	5	51	1.24
43724876--43724910	14	2.4	15	85	4	54	34	8	0	57	1.29
43728257--43728340	25	3.3	25	77	12	89	23	26	21	28	1.99
43728230--43728346	52	2.3	49	80	7	135	25	25	19	29	1.99
43728286--43728350	25	2.6	25	83	9	87	27	23	20	29	1.98
43732709--43732748	17	2.4	17	91	0	62	37	30	32	0	1.58
43733551--43733688	42	3.2	43	66	17	113	25	24	23	26	2.00
43733547--43733840	87	3.4	87	89	0	448	25	24	22	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43738537--43738658	22	5.3	22	62	21	61	25	29	11	33	1.91
43738509--43739017	47	10.7	47	92	2	749	27	30	9	33	1.88
43738937--43739083	74	2.0	74	98	0	285	32	27	5	34	1.80
43738991--43739044	27	2.0	27	100	0	108	37	25	0	37	1.57
43740340--43740507	85	2.0	85	98	0	327	27	25	8	38	1.84
43754928--43754978	25	2.0	25	82	14	61	19	3	1	74	1.07
43757118--43757180	11	5.8	10	83	5	63	36	50	3	9	1.51
43757119--43757169	22	2.3	22	89	0	75	37	52	1	7	1.42
43768506--43768628	33	3.4	33	72	20	111	34	28	17	19	1.95
43768684--43768865	51	3.6	51	80	5	233	30	22	19	26	1.98
43768685--43768918	102	2.3	101	88	2	344	29	24	19	26	1.98
43768685--43768924	51	4.7	50	77	7	225	29	25	19	26	1.98
43770545--43770640	45	2.1	45	96	0	174	30	13	9	46	1.74
43770732--43770764	15	2.2	15	100	0	66	45	12	12	30	1.78
43774991--43775219	61	3.8	60	81	3	215	27	25	15	32	1.95
43774991--43775216	122	1.9	122	80	0	272	26	25	15	32	1.95
43775438--43775473	18	1.9	19	88	5	56	13	5	19	61	1.52
43776289--43776361	20	3.7	20	72	7	67	36	23	21	17	1.94
43776348--43776405	28	2.0	29	86	3	82	34	20	27	17	1.95
43776316--43776445	68	1.9	69	82	1	163	34	20	24	20	1.96
43778761--43778803	22	2.0	22	90	0	68	11	16	25	46	1.80
43778873--43779086	43	5.0	43	82	4	261	29	28	16	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43783519--43783648	67	1.9	67	87	0	188	36	25	16	21	1.93
43783586--43783754	41	4.1	41	82	1	187	35	26	15	21	1.94
43786755--43786869	30	4.0	28	82	8	140	24	24	26	25	2.00
43786968--43787047	26	3.1	26	76	7	90	33	25	22	18	1.97
43787281--43787666	27	14.3	27	83	1	432	20	18	20	39	1.92
43788304--43788346	21	2.0	21	82	8	52	25	39	0	34	1.56
43789980--43790052	34	2.1	35	84	2	94	9	24	12	53	1.68
43790690--43790887	27	7.3	27	82	2	227	41	18	20	19	1.90
43791244--43791323	28	2.9	28	86	0	106	21	22	25	31	1.98
43793698--43793765	29	2.3	29	85	5	93	27	30	13	27	1.94
43793867--43793945	29	2.7	29	84	2	104	30	30	13	25	1.94
43798348--43798525	27	6.6	27	80	6	164	29	28	16	25	1.97
43798369--43798524	82	1.9	81	85	3	215	28	28	16	25	1.97
43804877--43805061	40	4.7	40	82	6	216	25	27	22	24	2.00
43804877--43805061	79	2.3	81	80	10	211	25	27	22	24	2.00
43806197--43806371	56	3.1	56	97	0	325	23	23	9	44	1.82
43825148--43825191	22	1.9	24	81	9	56	29	13	13	43	1.83
43827459--43827515	15	3.7	15	95	4	96	19	12	5	63	1.47
43827555--43827602	13	3.7	13	100	0	96	12	0	6	81	0.87
43828594--43828640	23	2.1	23	84	7	62	51	12	4	31	1.59
43835591--43835668	21	3.4	23	74	8	70	26	2	30	39	1.70
43835627--43835693	21	3.1	21	82	4	80	29	2	32	34	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43836842--43836882	13	3.7	11	87	12	50	82	0	7	9	0.83
43836841--43836873	13	2.5	13	100	0	66	81	0	6	12	0.85
43837933--43837974	18	2.3	18	87	0	57	71	4	16	7	1.26
43853184--43853355	84	2.0	84	100	0	344	40	12	12	34	1.81
43868123--43868169	20	2.3	20	85	7	60	29	8	34	27	1.87
43876048--43876098	20	2.5	20	84	9	59	29	3	11	54	1.54
43883579--43883608	15	1.9	16	93	6	53	26	10	0	63	1.26
43883350--43884334	503	1.9	500	91	3	1594	30	12	22	34	1.90
43885488--43885526	20	2.0	20	89	0	60	25	23	28	23	1.99
43886799--43886831	11	3.0	11	83	16	50	36	15	21	27	1.93
43889335--43889510	40	4.4	39	86	3	174	25	19	27	27	1.99
43889288--43889512	80	2.8	79	80	3	218	24	20	28	26	1.99
43897243--43897412	40	4.3	40	90	0	216	24	21	28	25	1.99
43897190--43897414	80	2.8	79	82	3	236	24	21	28	25	1.99
43897265--43897447	79	2.3	80	82	1	226	25	21	27	25	1.99
43907681--43907758	40	2.0	40	89	0	120	30	11	15	42	1.82
43934034--43934101	29	2.3	29	85	5	93	27	30	13	27	1.94
43933924--43934249	173	1.9	173	93	1	564	30	24	14	30	1.94
43934202--43934280	29	2.7	30	82	13	110	29	30	15	25	1.96
43942171--43942238	29	2.3	29	85	5	93	27	30	13	27	1.94
43942340--43942418	29	2.7	29	84	2	104	30	30	13	25	1.94
43949354--43949436	35	2.4	35	79	4	87	7	32	10	49	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43950060--43950312	27	9.4	27	82	7	291	44	20	18	16	1.87
43961322--43963342	670	3.0	670	99	0	4015	33	17	14	35	1.89
43965176--43965201	9	2.9	9	100	0	52	57	30	11	0	1.34
43965450--43965474	9	2.8	9	100	0	50	0	12	0	88	0.53
43978758--43978878	44	2.8	44	79	9	131	28	16	23	31	1.96
43978897--43979925	515	2.0	515	99	0	2031	35	24	17	22	1.95
43980000--43980025	9	2.9	9	100	0	52	57	30	11	0	1.34
43981082--43981119	3	12.7	3	100	0	76	34	0	0	65	0.93
43993029--43993271	50	4.9	50	87	0	315	22	31	19	26	1.98
44001040--44001473	50	8.8	50	82	3	484	26	22	28	21	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199