genome.fa.s20.2.7.7.80.10.50.1000.111.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Length:  58101237

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  111  of  199  ( 23844 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31494631--31494837	55	3.8	55	96	0	360	26	14	28	30	1.95
31512962--31513168	27	7.6	27	91	3	315	26	14	28	30	1.95
31512962--31513168	55	3.8	55	96	0	360	26	14	28	30	1.95
31516469--31516632	71	2.3	71	88	1	238	35	31	9	23	1.87
31519795--31519892	42	2.3	42	91	3	153	24	26	11	37	1.89
31522853--31523037	76	2.4	76	73	0	172	16	17	29	36	1.92
31525129--31525336	106	2.0	106	94	0	362	32	9	21	37	1.85
31535446--31536135	345	2.0	345	99	0	1353	30	11	22	35	1.89
31536489--31536546	23	2.6	23	83	2	73	17	1	34	46	1.58
31554413--31554528	50	2.3	50	79	2	126	27	24	25	23	2.00
31564955--31564993	20	1.9	21	85	15	55	58	5	20	15	1.55
31570686--31570744	28	2.1	28	96	0	109	37	22	20	20	1.95
31571179--31571634	27	16.7	27	75	11	308	30	7	20	41	1.80
31571191--31571634	55	8.1	55	78	9	410	30	7	20	41	1.80
31571208--31571634	82	5.2	81	77	10	327	29	7	20	41	1.80
31571252--31571675	82	5.2	80	80	8	347	29	8	21	40	1.82
31571246--31571675	27	15.7	27	76	10	329	29	8	21	40	1.82
31575649--31575694	15	3.0	16	82	17	62	15	45	0	39	1.46
31575655--31575691	17	2.2	16	90	9	56	13	45	0	40	1.43
31583853--31583881	11	2.6	11	100	0	58	27	0	0	72	0.85
31584590--31584624	15	2.4	15	90	4	54	48	0	8	42	1.33
31584647--31584678	11	3.1	11	86	13	50	21	6	0	71	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31590123--31590154	15	2.1	15	94	0	55	50	0	9	40	1.35
31590179--31590226	10	4.9	10	82	2	62	22	8	2	66	1.29
31599148--31599285	50	2.8	50	93	0	222	21	32	21	24	1.98
31601249--31601278	15	2.0	15	93	0	51	33	16	0	50	1.46
31603166--31603204	9	4.2	9	83	6	51	12	46	0	41	1.42
31603160--31603194	16	2.1	17	89	5	54	11	48	0	40	1.39
31605738--31605984	50	4.8	50	80	5	228	29	21	27	21	1.99
31612644--31612831	50	3.6	50	77	7	171	27	17	29	25	1.98
31614931--31614955	6	4.2	6	100	0	50	68	0	32	0	0.90
31632141--31632242	5	19.6	5	73	18	84	60	0	2	35	1.18
31633353--31633406	26	2.1	26	100	0	108	33	7	0	59	1.25
31636320--31636352	15	2.2	15	94	0	57	63	9	12	15	1.51
31636725--31636768	21	2.1	22	79	12	56	65	9	2	22	1.32
31642973--31643010	20	1.9	20	89	10	60	60	5	0	34	1.19
31658484--31658527	17	2.7	17	86	13	58	38	0	45	15	1.47
31658487--31658528	15	2.7	15	80	16	50	38	0	47	14	1.44
31660733--31660784	23	2.3	23	93	0	86	50	9	32	7	1.64
31670918--31670946	6	4.8	6	100	0	58	86	0	0	13	0.58
31680191--31680385	45	4.3	45	89	0	282	24	19	15	40	1.90
31680717--31680771	20	2.8	20	88	0	83	29	16	29	25	1.97
31683105--31683302	66	3.0	67	90	3	328	16	20	15	47	1.82
31683927--31684121	45	4.3	45	89	0	282	24	18	15	41	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31684436--31684507	20	3.7	20	83	1	92	31	15	27	25	1.95
31697145--31697172	14	2.0	14	100	0	56	57	7	14	21	1.61
31707454--31707495	15	2.8	15	85	0	57	52	2	2	42	1.27
31711506--31711546	3	13.7	3	94	0	73	0	31	0	68	0.90
31713344--31713404	30	2.1	30	84	3	79	49	11	6	32	1.65
31719185--31719220	8	4.5	8	92	0	63	52	25	0	22	1.47
31723168--31723360	27	7.2	26	83	3	215	44	17	17	20	1.87
31723168--31723360	53	3.6	52	83	4	251	44	17	17	20	1.87
31723168--31723377	80	2.6	78	84	6	271	43	18	17	21	1.88
31723520--31723600	26	3.1	26	87	0	117	19	19	22	38	1.94
31723711--31723773	28	2.3	27	88	5	99	20	25	25	28	1.99
31723711--31723781	28	2.6	28	84	6	74	23	23	25	26	2.00
31730631--31730672	20	2.2	19	87	12	59	16	21	4	57	1.58
31735255--31735292	18	2.1	18	100	0	76	13	15	26	44	1.83
31735759--31735809	23	2.3	23	89	3	77	33	5	21	39	1.78
31740399--31740437	19	1.9	19	85	10	51	33	7	7	51	1.59
31746620--31746656	19	1.9	19	88	0	56	40	2	5	51	1.39
31760554--31760675	23	5.3	23	87	0	190	22	21	26	30	1.99
31760554--31760675	46	2.7	46	96	0	217	22	21	26	30	1.99
31765356--31765407	26	2.0	26	85	11	70	59	0	3	36	1.16
31765448--31765536	31	3.0	29	80	6	99	29	21	6	42	1.78
31766102--31766140	19	2.1	19	86	13	55	69	0	28	2	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31766283--31766334	7	7.4	7	91	6	70	78	0	11	9	0.95
31766287--31766335	15	3.3	15	88	5	73	79	0	12	8	0.93
31766268--31766336	7	9.3	7	85	7	66	78	0	14	7	0.96
31766268--31766336	15	4.6	14	78	10	66	78	0	14	7	0.96
31766503--31766674	75	2.3	75	82	8	188	25	40	27	7	1.82
31766686--31766728	15	2.8	15	78	3	50	79	0	20	0	0.74
31766686--31766737	16	3.3	16	75	5	52	80	1	17	0	0.80
31767039--31767084	21	2.1	21	84	8	56	39	8	6	45	1.61
31767144--31767355	18	11.4	17	68	23	92	32	10	10	46	1.73
31767146--31767359	19	11.4	19	68	22	89	32	10	10	46	1.72
31767144--31767406	36	7.1	36	76	13	234	32	11	10	45	1.74
31767186--31767349	79	2.0	81	88	4	244	28	10	11	50	1.71
31767222--31767311	43	2.1	44	87	6	130	22	10	13	54	1.68
31767816--31767841	9	2.9	9	100	0	52	46	19	0	34	1.50
31777159--31777854	75	9.2	75	86	2	880	29	17	19	33	1.95
31778167--31778243	30	2.6	30	85	8	95	33	20	3	41	1.71
31778197--31778264	29	2.3	30	87	2	93	33	17	4	44	1.69
31778867--31778940	30	2.6	29	74	8	71	64	0	35	0	0.94
31778842--31778929	37	2.4	36	83	10	108	68	0	31	0	0.90
31778902--31778940	19	2.1	19	90	9	62	56	0	43	0	0.99
31779371--31779410	8	4.9	8	84	3	53	82	0	17	0	0.67
31779371--31779421	26	2.0	26	88	0	75	82	1	15	0	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31779851--31780204	126	2.8	126	93	0	591	27	15	22	33	1.95
31780927--31781069	33	4.4	32	85	10	195	27	0	25	46	1.53
31780935--31781065	38	3.7	38	69	19	118	28	0	25	46	1.53
31780975--31781000	12	2.2	12	100	0	52	15	0	38	46	1.46
31780919--31781055	68	2.0	68	94	2	240	27	0	25	46	1.53
31781054--31781095	13	3.2	13	96	0	75	23	0	23	52	1.47
31781046--31781252	61	3.4	61	86	9	314	23	0	31	45	1.53
31781115--31781156	13	3.2	13	86	6	59	26	0	21	52	1.47
31781162--31781194	6	5.7	6	85	7	50	18	0	48	33	1.48
31781161--31781194	11	2.9	12	82	8	52	20	0	47	32	1.51
31781187--31781221	13	2.7	13	95	0	61	20	0	28	51	1.47
31781185--31781334	48	3.1	48	92	1	246	23	0	30	46	1.52
31781175--31781355	48	3.9	44	83	10	188	24	0	28	46	1.53
31781327--31781357	13	2.4	13	94	0	53	25	0	25	48	1.52
31781365--31781476	25	4.7	25	69	16	103	42	13	0	42	1.50
31781878--31781912	18	1.9	18	94	0	61	34	8	31	25	1.86
31782564--31782588	7	3.6	7	100	0	50	60	12	0	28	1.32
31783703--31783821	51	2.4	51	85	4	152	47	0	24	28	1.52
31783788--31783849	22	2.7	22	85	5	79	43	0	30	25	1.55
31783753--31783843	11	7.6	11	67	24	51	45	0	30	24	1.54
31784490--31784625	36	3.8	37	79	4	161	36	11	11	41	1.76
31784497--31784622	17	6.9	18	72	16	91	37	10	11	41	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31784497--31784622	19	6.9	19	71	13	86	37	10	11	41	1.75
31787645--31787692	7	6.7	7	83	4	51	39	37	0	22	1.55
31787710--31787744	7	5.0	7	85	0	52	28	51	0	20	1.47
31787710--31787748	14	2.8	14	88	0	60	30	46	0	23	1.53
31787712--31787777	21	3.1	22	86	4	82	37	40	0	21	1.53
31788795--31788902	42	2.6	41	85	2	128	32	22	22	23	1.98
31788835--31789116	41	6.9	40	81	5	287	29	30	20	20	1.98
31788836--31789051	81	2.6	81	87	2	297	28	33	20	17	1.95
31788835--31789123	122	2.3	123	83	2	357	28	30	20	20	1.97
31788786--31789118	41	8.1	41	80	4	142	29	27	20	22	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199