genome.fa.s20.2.7.7.80.10.50.1000.197.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Length:  58101237

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  197  of  199  ( 23844 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57337178--57337257	41	2.0	40	83	13	103	73	1	3	21	1.06
57337778--57337833	21	2.8	19	82	10	76	37	16	8	37	1.80
57337789--57337832	21	2.1	21	100	0	88	38	13	9	38	1.77
57339625--57339741	49	2.2	54	77	14	145	45	10	3	41	1.55
57339638--57339742	49	2.1	50	87	1	149	46	10	3	39	1.56
57341018--57341073	26	2.1	26	83	3	67	48	5	0	46	1.25
57342153--57342191	15	2.5	16	79	8	53	30	0	0	69	0.89
57343675--57343802	26	4.9	25	74	13	89	57	2	3	37	1.28
57343691--57343801	17	6.4	17	67	22	70	56	1	1	39	1.20
57343755--57343856	37	2.8	37	71	10	93	59	1	2	35	1.23
57348676--57348727	25	2.1	24	89	3	77	25	26	15	32	1.95
57348948--57349007	31	1.9	31	83	6	77	41	1	18	38	1.60
57352325--57352395	30	2.4	29	88	9	101	26	23	5	43	1.76
57352932--57353033	32	3.2	32	80	8	102	66	1	31	0	1.03
57352958--57353032	25	3.1	25	80	3	73	62	1	36	0	1.04
57353112--57353150	16	2.4	16	82	0	51	76	0	20	2	0.90
57355710--57355791	29	2.8	29	83	12	96	52	3	0	43	1.18
57364273--57364332	31	1.9	32	89	3	95	46	5	11	36	1.62
57365350--57365380	6	5.2	6	100	0	62	35	32	16	16	1.91
57365350--57365387	18	2.1	18	90	0	58	34	34	15	15	1.90
57371290--57371327	18	2.1	19	90	5	60	28	0	5	65	1.14
57383410--57383716	107	2.9	107	86	2	440	33	16	17	32	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57383756--57383800	20	2.2	21	84	11	58	57	6	11	24	1.57
57383790--57383830	22	2.0	21	85	9	57	75	4	7	12	1.16
57385899--57386195	44	6.8	44	74	7	253	30	22	18	28	1.97
57385899--57386234	88	3.8	86	74	7	282	30	22	18	28	1.97
57385899--57386234	44	7.7	42	74	10	223	30	22	18	28	1.97
57385899--57386379	130	3.7	129	78	10	399	28	22	19	29	1.98
57386462--57386671	44	4.8	43	69	16	144	25	26	19	28	1.99
57386396--57386895	132	3.8	132	87	3	668	26	24	20	28	1.99
57386912--57386937	5	5.2	5	100	0	52	42	19	19	19	1.90
57388030--57388060	9	3.4	9	90	0	53	38	22	12	25	1.90
57388565--57388735	57	3.1	57	63	24	141	47	10	16	25	1.78
57388486--57388812	106	3.1	106	93	0	546	49	10	15	24	1.75
57389072--57389121	20	2.5	20	83	0	64	0	22	2	76	0.89
57393728--57394087	106	3.4	106	89	2	535	33	16	17	32	1.92
57394197--57394236	4	9.2	4	86	13	53	70	2	5	22	1.19
57394197--57394269	22	3.4	21	74	18	53	72	2	5	19	1.16
57394239--57394293	19	2.9	18	79	12	58	70	0	3	25	1.03
57394279--57394322	23	2.0	22	90	4	70	56	2	6	34	1.38
57394475--57394507	12	2.8	12	95	0	57	63	12	0	24	1.28
57409960--57409992	17	1.9	17	88	11	50	33	0	0	66	0.92
57416342--57416414	36	2.0	36	94	0	128	28	31	9	30	1.89
57428531--57428594	27	2.4	27	87	12	96	50	15	3	31	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57431538--57431586	21	2.3	21	86	6	64	61	4	0	34	1.15
57431571--57431621	25	2.0	26	85	11	70	47	3	1	47	1.32
57434639--57434689	26	2.0	26	96	0	93	11	23	35	29	1.90
57434560--57434930	103	3.6	105	89	5	553	19	19	29	30	1.97
57439888--57439921	9	3.8	9	92	0	50	47	14	11	26	1.79
57439885--57439921	18	2.1	18	94	0	65	48	13	10	27	1.75
57440689--57440952	72	3.7	72	81	2	332	32	14	17	35	1.90
57440689--57440952	144	1.8	144	91	0	438	32	14	17	35	1.90
57445291--57445452	44	3.7	44	78	1	164	25	19	18	36	1.95
57447734--57447929	76	2.6	76	95	0	347	11	20	20	47	1.80
57451462--57451567	32	3.5	28	80	15	106	25	3	19	50	1.64
57451475--57451567	32	2.9	32	93	0	159	25	4	19	50	1.66
57451430--57451569	59	2.3	62	81	8	171	25	3	19	51	1.63
57452879--57452925	20	2.3	20	88	0	76	46	12	10	29	1.76
57455180--57455223	18	2.4	18	96	0	79	65	2	18	13	1.36
57465639--57465682	20	2.2	20	95	0	79	27	13	20	38	1.90
57466857--57466895	19	2.1	19	95	0	69	61	0	20	17	1.34
57468135--57468167	12	2.8	12	90	0	57	69	0	3	27	1.03
57478408--57478715	109	2.9	109	89	1	460	32	18	16	32	1.93
57479230--57479264	17	2.1	17	89	10	54	60	0	11	28	1.32
57480608--57480767	80	2.0	80	98	0	311	18	28	16	36	1.92
57481254--57481703	87	5.2	88	83	2	529	26	24	21	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57481440--57481570	42	3.0	42	64	18	106	25	25	22	27	2.00
57482752--57482798	21	2.2	21	88	0	67	25	38	10	25	1.88
57486401--57486449	19	2.5	20	80	6	57	42	12	18	26	1.85
57487821--57488128	109	2.9	109	89	1	460	32	18	16	32	1.93
57488643--57488677	17	2.1	17	89	10	54	60	0	11	28	1.32
57499585--57499631	22	2.0	22	88	8	67	57	4	2	36	1.30
57504128--57504179	24	2.2	24	85	0	68	53	9	3	32	1.51
57508593--57508746	82	1.9	82	98	0	299	28	22	18	31	1.97
57510239--57510288	25	2.0	25	96	0	91	34	32	30	4	1.76
57517283--57517320	17	2.2	17	100	0	76	26	28	5	39	1.78
57520763--57521004	73	3.3	72	86	2	315	28	18	27	26	1.98
57520909--57521237	114	2.9	113	84	4	412	26	20	27	26	1.99
57521023--57521498	187	2.5	189	82	2	557	27	18	26	27	1.98
57521148--57521310	73	2.2	72	83	3	202	27	19	26	25	1.99
57520853--57521426	301	1.9	303	89	0	900	27	19	26	26	1.99
57521324--57521572	73	3.4	73	82	3	302	27	18	26	27	1.98
57521752--57521804	14	3.8	14	76	0	61	24	0	28	47	1.52
57521814--57521866	22	2.4	21	81	6	61	22	0	28	49	1.50
57521814--57521942	21	6.2	21	70	14	79	20	0	32	46	1.56
57521900--57521943	7	6.3	7	82	10	54	15	0	36	47	1.46
57521829--57521943	14	7.8	14	71	20	58	19	0	34	45	1.56
57522232--57522294	14	4.4	15	73	15	53	22	0	41	36	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57522232--57522320	22	4.2	22	74	5	78	22	1	40	35	1.62
57522550--57522623	30	2.5	29	82	10	96	51	2	4	41	1.35
57522571--57522607	19	1.9	19	88	0	56	51	2	2	43	1.30
57522555--57522608	10	5.3	10	76	10	56	57	1	1	38	1.20
57523071--57523208	68	2.0	69	97	1	260	39	12	9	38	1.75
57524668--57524735	23	3.0	23	77	12	77	35	8	20	35	1.84
57525595--57525820	42	5.3	42	89	1	308	20	19	27	33	1.96
57526929--57526974	24	1.9	24	95	0	83	34	23	4	36	1.75
57528762--57528810	21	2.3	21	83	10	64	36	16	2	44	1.59
57530408--57530451	6	7.2	6	92	5	70	15	18	0	65	1.27
57530395--57530451	18	3.1	19	87	5	73	15	17	3	63	1.45
57531794--57531846	6	8.8	6	97	0	97	0	64	0	35	0.94
57538644--57538884	120	2.0	120	98	1	466	25	10	30	33	1.89
57541261--57541309	21	2.3	21	83	10	64	36	16	2	44	1.59
57541876--57542126	43	5.9	43	71	11	147	25	23	25	25	2.00
57541893--57542124	86	2.7	84	76	7	225	25	24	25	25	2.00
57542537--57542629	42	2.2	42	86	3	125	6	44	16	33	1.73
57542537--57542629	21	4.4	21	80	0	105	6	44	16	33	1.73
57542605--57542648	21	2.1	21	82	0	52	4	40	15	38	1.68
57542620--57542766	66	2.2	66	89	2	215	12	29	17	39	1.87
57544425--57544690	34	8.1	34	81	7	325	41	2	10	45	1.52
57544432--57544674	65	3.7	65	94	1	407	41	2	9	45	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57544655--57544699	25	2.0	22	83	16	56	46	2	6	44	1.42
57544967--57545234	43	6.2	43	85	3	351	28	32	15	23	1.95
57550399--57550461	21	3.0	22	77	9	60	36	38	0	25	1.56
57551217--57551321	40	2.7	38	84	8	131	19	20	22	38	1.94
57553497--57553831	90	3.8	90	86	7	433	44	25	1	28	1.64
57554313--57555019	114	6.3	113	83	4	865	31	24	21	22	1.98
57554313--57555019	335	2.1	337	85	4	944	31	24	21	22	1.98
57555736--57555768	6	5.3	6	96	3	57	15	15	0	69	1.19
57555736--57555880	63	2.3	63	89	3	211	26	17	5	49	1.69
57555806--57555831	6	4.3	6	100	0	52	15	15	0	69	1.20

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199