genome.fa.s20.2.7.7.80.10.50.1000.14.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Length:  58101237

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  14  of  199  ( 23844 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4619319--4619387	15	4.9	14	77	19	63	75	0	14	10	1.05
4620625--4620761	43	3.2	43	65	17	111	32	26	18	22	1.97
4620614--4621246	87	7.3	87	92	1	984	30	24	21	23	1.99
4620614--4621246	175	3.6	175	92	1	999	30	24	21	23	1.99
4620614--4621271	262	2.5	261	90	2	993	30	24	21	23	1.99
4621259--4621573	44	7.3	44	72	7	180	30	20	23	25	1.99
4621257--4621529	131	2.1	131	95	0	483	29	20	24	25	1.99
4621363--4621573	87	2.5	84	81	7	239	30	20	23	25	1.99
4621322--4621570	44	5.8	41	73	11	189	28	21	23	26	1.99
4631058--4631092	18	2.0	17	94	5	61	28	2	5	62	1.32
4634022--4634069	13	3.8	12	78	13	51	50	2	10	37	1.49
4642621--4642667	21	2.2	22	88	11	71	44	6	19	29	1.75
4646706--4646730	7	3.6	7	100	0	50	88	0	0	12	0.53
4647692--4647744	13	4.1	13	78	7	54	43	5	1	49	1.37
4650303--4650357	23	2.4	24	78	9	69	47	14	1	36	1.55
4654545--4654581	17	2.2	17	86	13	51	56	0	2	40	1.13
4654855--4654952	19	5.1	18	71	14	72	29	4	2	64	1.23
4654791--4654888	46	2.1	48	84	7	130	31	6	3	59	1.37
4654938--4654970	18	1.9	17	88	11	50	36	0	3	60	1.12
4660190--4660255	28	2.4	27	81	16	75	51	0	1	46	1.10
4674683--4674712	14	2.1	15	93	6	53	60	0	0	40	0.97
4674676--4674713	13	2.8	13	82	17	51	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4674806--4674852	23	2.0	23	88	8	69	48	0	6	44	1.28
4680875--4680916	13	3.1	13	83	16	50	52	4	0	42	1.22
4694735--4694786	26	2.0	26	100	0	104	26	23	11	38	1.89
4701299--4701334	17	2.1	18	89	5	56	36	0	2	61	1.11
4706200--4706946	373	2.0	377	85	7	1027	43	16	11	28	1.82
4706923--4707083	84	1.9	84	86	5	227	47	12	11	29	1.76
4712595--4712677	36	2.3	36	91	0	130	20	24	32	22	1.98
4713355--4713466	36	3.2	36	72	7	104	17	25	19	37	1.94
4725306--4725355	25	2.2	24	82	13	61	64	4	0	32	1.12
4730753--4730809	25	2.2	26	84	3	71	17	24	22	35	1.95
4731813--4731874	21	2.9	21	92	4	97	3	22	3	70	1.16
4732977--4733012	18	2.0	18	100	0	72	38	5	0	55	1.23
4735868--4735898	9	3.4	9	95	0	53	25	9	22	41	1.84
4737470--4737505	18	2.0	18	100	0	72	44	0	16	38	1.48
4746028--4746094	23	3.0	23	69	20	61	14	13	10	61	1.57
4746560--4746602	19	2.3	19	80	8	52	30	6	2	60	1.35
4752287--4752486	43	4.7	43	78	4	201	31	31	16	21	1.95
4752434--4752523	41	2.2	42	86	6	121	34	27	15	22	1.94
4755045--4755104	30	2.0	30	100	0	120	26	23	10	40	1.86
4757050--4757074	7	3.6	7	100	0	50	44	56	0	0	0.99
4757305--4757338	15	2.3	15	95	5	61	35	26	0	38	1.57
4757853--4757989	40	3.4	39	72	11	125	23	22	18	35	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4757873--4757983	40	2.8	40	79	6	127	26	24	19	29	1.99
4757995--4758020	12	2.2	12	100	0	52	46	30	15	7	1.74
4774659--4774687	3	9.7	3	100	0	58	34	0	0	65	0.93
4775385--4775454	31	2.3	31	92	0	113	32	22	10	34	1.88
4775652--4775717	30	2.2	31	78	8	73	62	3	3	31	1.26
4775661--4775719	29	2.0	29	83	6	75	59	3	3	33	1.31
4776472--4776519	20	2.5	19	83	9	62	37	0	2	60	1.09
4776472--4776576	41	2.5	42	82	14	110	40	1	2	55	1.26
4776567--4776642	30	2.5	29	83	10	89	52	9	7	30	1.62
4777600--4777648	18	3.0	16	82	8	55	38	0	0	61	0.96
4791821--4792170	188	1.9	188	85	1	486	40	19	17	22	1.91
4792762--4792794	16	2.1	16	100	0	66	24	33	18	24	1.97
4806091--4806141	25	2.0	25	88	3	75	41	11	3	43	1.60
4814392--4814435	4	11.0	4	100	0	88	25	0	25	50	1.50
4816524--4816561	15	2.5	15	100	0	76	13	26	5	55	1.59
4817183--4817234	22	2.4	22	83	3	61	61	7	5	25	1.45
4826741--4826779	18	2.2	18	95	0	69	20	20	17	41	1.91
4827191--4827216	13	2.0	13	100	0	52	23	23	15	38	1.92
4830807--4830834	2	14.0	2	100	0	56	50	0	50	0	1.00
4832999--4833187	63	3.0	63	94	1	317	18	22	15	43	1.87
4849125--4849166	21	2.0	21	100	0	84	42	19	0	38	1.51
4854963--4855002	20	2.0	20	90	0	62	27	10	12	50	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4854949--4855014	35	1.9	34	90	6	107	31	7	13	46	1.71
4856234--4856273	21	1.9	21	89	0	62	57	0	2	40	1.12
4856259--4856324	30	2.3	30	82	7	75	56	3	7	33	1.43
4856259--4856336	30	2.8	26	71	19	68	53	2	8	34	1.46
4856410--4856456	24	2.0	24	95	0	85	42	0	10	46	1.38
4856740--4856779	3	13.3	3	100	0	80	67	0	32	0	0.91
4863533--4863574	18	2.3	18	84	8	50	57	2	2	38	1.25
4864125--4864153	9	3.2	9	100	0	58	10	0	31	58	1.31
4864267--4864524	125	2.1	125	87	2	365	30	15	23	30	1.96
4865146--4865245	42	2.3	43	91	3	166	54	0	3	43	1.16
4865175--4865236	13	4.5	13	71	11	52	58	0	1	40	1.08
4865844--4865893	25	2.0	25	84	0	64	38	16	12	34	1.85
4865947--4865981	15	2.2	16	90	5	54	45	0	2	51	1.16
4868854--4868916	30	2.2	29	75	8	67	55	3	0	41	1.16
4868954--4868984	16	1.9	16	93	0	53	25	22	6	45	1.76
4874739--4874793	21	2.6	21	85	0	74	32	38	5	23	1.78
4875081--4875131	24	2.1	24	88	0	75	62	1	0	35	1.06
4876595--4876654	29	2.1	29	100	0	120	33	28	20	18	1.96
4884598--4884641	22	2.0	22	100	0	88	36	22	9	31	1.86
4887714--4887777	27	2.3	27	94	2	110	46	7	12	32	1.70
4894623--4894656	17	2.0	17	88	0	50	52	0	0	47	1.00
4894510--4894825	156	2.0	157	95	0	562	43	3	6	47	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4894878--4894929	15	3.6	15	80	12	56	53	1	0	44	1.11
4894998--4895049	15	3.6	15	80	12	56	53	1	0	44	1.11
4895118--4895169	15	3.6	15	80	12	56	53	1	0	44	1.11
4895358--4895409	15	3.6	15	80	12	56	53	1	0	44	1.11
4895478--4895520	15	2.8	16	79	10	54	53	2	0	44	1.13
4894762--4895534	120	6.4	120	98	0	1501	49	5	2	42	1.39
4895550--4895757	91	2.3	91	88	4	285	46	4	3	45	1.41
4915073--4915126	25	2.2	24	83	9	65	61	3	3	31	1.31
4918434--4918527	31	3.1	31	79	13	113	27	9	19	43	1.82
4918445--4918527	31	2.7	30	87	3	121	28	10	19	40	1.85
4918642--4918812	43	4.0	43	91	0	279	25	15	25	33	1.95
4920415--4920444	5	6.2	5	92	7	53	16	0	0	83	0.65
4933602--4933669	4	16.8	4	72	17	52	70	4	23	1	1.13
4933600--4933669	33	2.1	34	86	2	97	71	4	22	1	1.12
4935835--4935884	15	3.2	15	76	20	57	36	0	14	50	1.43
4945706--4946057	43	8.2	42	74	11	200	27	27	19	25	1.99
4945828--4946057	85	2.7	84	75	13	220	28	30	17	23	1.97
4953232--4953418	92	2.0	92	93	0	320	44	20	8	26	1.80
4954011--4954041	14	2.2	14	94	0	53	45	12	3	38	1.59
4956703--4956774	6	11.7	6	78	10	65	75	5	4	15	1.15
4957365--4957395	15	2.0	16	93	6	55	41	0	51	6	1.27
4961150--4961180	14	2.2	14	94	0	53	48	12	0	38	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4976862--4976944	43	1.9	43	100	0	166	24	16	8	50	1.73
4982481--4982554	35	2.2	35	87	4	107	41	12	10	35	1.77
4985106--4985333	43	5.3	43	82	3	244	30	32	17	19	1.95
4985106--4985346	86	2.8	86	81	5	290	31	31	16	20	1.95
4985106--4985352	129	1.9	129	79	4	275	33	30	15	20	1.94
4986910--4986938	14	2.1	14	100	0	58	48	13	10	27	1.75
4989202--4989228	14	1.9	14	100	0	54	33	37	0	29	1.58
4989530--4989667	7	19.6	7	71	12	68	47	31	1	19	1.58
4989869--4989945	40	1.9	40	89	0	118	38	23	16	20	1.92
4989910--4990154	41	6.0	41	86	2	312	31	33	18	16	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199