genome.fa.s20.2.7.7.80.10.50.1000.128.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Length:  58101237

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  128  of  199  ( 23844 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37039492--37039998	274	1.8	275	84	6	697	29	13	21	35	1.92
37042023--37042586	284	2.0	284	97	0	1067	28	17	16	37	1.92
37048194--37048326	71	1.9	71	82	6	171	27	14	10	47	1.77
37048548--37048675	56	2.3	55	83	6	150	29	15	7	47	1.72
37048543--37048719	57	3.1	56	78	8	171	30	13	7	48	1.70
37053658--37053714	21	2.7	20	81	10	69	22	22	29	24	1.99
37057168--37057208	15	2.5	17	80	11	50	43	2	2	51	1.28
37079470--37079508	19	2.0	20	85	5	53	17	2	15	64	1.41
37087322--37087458	61	2.2	63	88	5	199	37	21	4	36	1.73
37090981--37091020	11	3.7	11	90	3	55	0	47	0	52	1.00
37090981--37091012	16	2.1	15	94	5	55	0	46	0	53	1.00
37091318--37091360	15	2.8	16	75	7	52	37	23	6	32	1.82
37096903--37096947	18	2.5	17	79	10	54	4	13	2	80	0.97
37098711--37098972	39	6.7	40	86	7	319	25	22	27	24	2.00
37100999--37101067	37	1.9	37	85	11	99	37	7	0	55	1.28
37101018--37101067	18	2.7	20	82	17	72	38	8	0	54	1.30
37104570--37104622	8	6.2	8	83	12	70	79	9	0	11	0.94
37104567--37104602	11	3.5	11	78	21	51	83	8	0	8	0.82
37104567--37104610	19	2.3	19	100	0	88	81	9	0	9	0.87
37104636--37104672	13	2.9	13	92	4	58	83	0	16	0	0.64
37104638--37104671	16	2.2	16	89	5	52	88	0	11	0	0.52
37106695--37107733	88	11.8	88	95	0	1873	26	23	25	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37107754--37107982	95	2.4	95	93	0	395	30	17	21	31	1.96
37107967--37108086	44	2.7	44	78	7	127	30	15	25	28	1.95
37108375--37108424	25	2.0	25	92	0	82	58	32	0	10	1.31
37109570--37109617	3	15.7	3	86	4	69	33	2	2	62	1.18
37123526--37123595	37	1.9	36	82	8	88	52	2	2	41	1.31
37130856--37130889	17	2.0	17	88	0	50	50	26	8	14	1.72
37135202--37135360	53	3.0	53	84	1	203	27	22	13	37	1.92
37136936--37137118	39	4.6	40	76	11	180	26	27	21	24	1.99
37141606--37141632	4	6.8	4	100	0	54	0	22	0	77	0.76
37143534--37143575	11	3.6	11	81	12	57	40	0	2	57	1.12
37148175--37148213	18	2.2	18	86	4	53	43	15	12	28	1.83
37148322--37148381	23	2.6	23	97	0	111	28	31	15	25	1.95
37151977--37152064	46	1.9	46	100	0	176	48	9	9	32	1.66
37156755--37156817	16	3.9	16	85	6	83	31	1	19	47	1.59
37156871--37156925	16	3.4	16	82	0	65	38	14	14	32	1.87
37159084--37159141	25	2.2	26	80	14	66	41	3	0	55	1.17
37159083--37159152	27	2.6	25	80	14	70	40	4	1	54	1.29
37159154--37159187	10	3.3	10	87	4	50	32	0	2	64	1.08
37162555--37162600	13	3.5	13	90	0	74	23	10	21	43	1.84
37162555--37162607	26	2.0	26	88	0	79	32	9	18	39	1.83
37162859--37162886	8	3.5	8	100	0	56	50	0	0	50	1.00
37162859--37162892	16	2.1	16	88	0	50	55	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37163201--37163244	22	2.0	21	91	4	70	40	4	13	40	1.65
37163415--37163545	64	2.0	64	98	0	253	41	15	16	27	1.88
37167086--37167203	37	3.5	36	82	13	144	33	27	10	27	1.89
37167388--37167556	41	4.1	41	89	0	266	23	26	20	30	1.98
37167394--37167556	82	2.0	82	97	0	308	23	26	19	30	1.98
37167782--37167822	17	2.5	17	88	7	59	43	14	2	39	1.59
37167775--37167822	17	2.6	18	77	12	53	43	16	2	37	1.60
37179158--37179197	20	2.0	20	85	9	55	22	5	12	60	1.52
37179406--37179511	20	5.2	20	73	10	63	19	16	7	55	1.65
37179406--37179512	41	2.6	39	78	11	101	19	16	7	56	1.64
37179446--37179513	21	3.3	20	76	12	66	17	16	10	55	1.67
37179748--37179788	20	2.0	20	90	9	66	26	19	2	51	1.59
37179942--37179992	21	2.5	20	81	9	57	41	7	0	50	1.31
37180365--37180554	20	9.5	20	66	23	71	56	9	14	18	1.65
37180837--37180927	40	2.3	40	84	3	112	58	8	15	17	1.62
37180825--37180927	20	5.2	20	70	4	82	58	9	14	17	1.63
37180959--37181058	20	4.9	21	75	12	84	55	6	17	22	1.63
37183260--37183320	26	2.4	26	79	15	65	31	6	1	60	1.32
37183293--37183340	21	2.3	21	85	7	62	29	6	2	62	1.31
37183291--37183372	24	3.5	24	74	12	73	31	7	3	57	1.44
37185401--37185485	38	2.2	38	89	0	134	35	22	10	31	1.88
37187078--37187129	15	3.3	16	86	10	72	32	19	7	40	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37190917--37190955	8	4.6	8	81	12	51	71	0	28	0	0.86
37190898--37190936	20	2.0	20	84	0	51	69	0	25	5	1.09
37190918--37190955	9	4.3	9	83	3	51	73	0	26	0	0.83
37190983--37191016	3	11.3	3	100	0	68	67	32	0	0	0.91
37206373--37206411	20	2.0	20	90	10	62	56	5	23	15	1.59
37213318--37213493	31	5.7	31	89	0	246	30	6	15	46	1.72
37213322--37213493	93	1.9	92	90	1	272	30	6	16	46	1.73
37213920--37213952	16	2.1	16	100	0	66	30	0	18	51	1.46
37214767--37214814	19	2.6	18	83	6	51	31	22	25	20	1.98
37214787--37214823	19	1.9	19	88	0	56	29	24	21	24	1.99
37215304--37215337	11	3.0	11	91	4	50	55	0	0	44	0.99
37223750--37223834	42	2.0	42	95	0	152	37	14	10	37	1.80
37233141--37233206	25	2.8	24	86	6	82	45	1	3	50	1.26
37233149--37233206	22	2.5	24	86	8	75	50	1	1	46	1.22
37233180--37233221	16	2.6	16	96	0	75	47	2	4	45	1.36
37235288--37235879	47	12.6	47	95	1	1033	28	29	8	32	1.87
37241242--37241293	23	2.3	23	96	0	95	32	26	21	19	1.97
37251105--37251367	40	6.6	40	87	3	316	24	20	27	27	1.99
37262988--37263250	40	6.6	40	86	3	307	25	20	27	26	1.99
37263027--37263285	80	3.3	80	83	3	238	26	20	27	25	1.99
37267374--37267558	40	4.7	40	80	6	207	24	21	28	25	1.99
37267375--37267558	79	2.3	81	79	7	198	25	21	28	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37267427--37267591	79	2.1	79	79	6	174	26	20	27	24	1.99
37269421--37269460	20	2.0	20	85	5	53	20	25	20	35	1.96
37275373--37275597	40	5.7	40	85	5	278	25	22	27	25	2.00
37275373--37275597	79	2.8	80	82	7	262	25	22	27	25	2.00
37275380--37275630	119	2.1	119	81	7	287	26	21	27	25	1.99
37278135--37278357	119	1.9	120	83	6	292	25	27	22	25	2.00
37278133--37278357	40	5.7	40	84	6	278	25	27	22	24	2.00
37279979--37280156	27	6.6	27	83	5	180	29	27	15	27	1.96
37280000--37280155	82	1.9	81	86	3	224	28	27	16	27	1.97
37289566--37289595	14	2.1	14	100	0	60	10	46	20	23	1.80
37302063--37302113	21	2.4	22	83	6	61	7	21	1	68	1.25
37307777--37307822	17	2.7	17	93	0	74	30	30	23	15	1.95
37311130--37311234	52	2.0	53	84	1	140	34	13	20	32	1.91
37317124--37317185	32	1.9	32	96	0	115	27	0	37	35	1.57
37320190--37320279	42	2.1	42	81	4	101	23	25	22	28	1.99
37329226--37329279	27	2.0	27	88	0	81	72	16	0	11	1.12
37329493--37329558	13	5.1	13	78	7	80	27	7	25	39	1.83
37339281--37339331	17	3.1	16	76	23	52	56	0	3	39	1.18
37340266--37340303	17	2.2	18	90	4	60	50	2	2	44	1.30
37340995--37341040	17	2.5	19	83	16	62	32	8	0	58	1.28
37342713--37342984	139	2.0	139	96	0	508	39	5	13	40	1.69
37343886--37343986	38	2.7	38	90	0	166	17	18	26	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37344667--37344709	17	2.5	17	88	0	68	20	30	27	20	1.98
37348680--37348769	44	2.0	44	95	0	162	24	14	13	47	1.80
37348690--37348758	22	3.1	22	64	15	61	24	11	14	49	1.77
37352381--37352762	45	8.6	45	81	7	410	47	15	16	20	1.82
37352398--37352471	38	1.9	38	94	0	130	47	18	16	17	1.83
37352478--37352549	24	3.1	24	68	11	69	50	15	15	19	1.79
37352457--37352570	21	5.1	21	64	18	61	50	13	15	21	1.78
37355505--37355559	19	2.7	21	78	10	62	58	9	0	32	1.30
37356201--37356347	27	5.5	27	80	3	136	25	23	14	36	1.93
37359167--37359517	119	2.9	119	98	0	675	20	18	22	38	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199