genome.fa.s20.2.7.7.80.10.50.1000.61.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Length:  58101237

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  61  of  199  ( 23844 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17550668--17550743	33	2.3	33	90	4	118	35	36	0	27	1.57
17555535--17555574	20	2.0	20	90	0	62	37	2	0	60	1.11
17560130--17560163	16	2.1	16	94	0	59	38	0	0	61	0.96
17560741--17560796	21	2.7	21	91	0	85	8	3	23	64	1.38
17562649--17562824	76	2.3	76	89	1	255	18	21	28	32	1.96
17565572--17565630	27	2.2	27	84	0	73	30	13	33	22	1.92
17565584--17565637	27	2.0	27	88	0	81	31	14	31	22	1.94
17565590--17565649	27	2.2	27	84	0	75	36	16	25	21	1.94
17567740--17567800	28	2.2	28	88	2	88	16	39	8	36	1.78
17570670--17570709	21	1.9	21	89	0	62	35	0	25	40	1.56
17570838--17570879	21	2.0	21	81	9	50	30	0	14	54	1.40
17571529--17571576	25	2.0	25	87	4	71	14	27	20	37	1.92
17571883--17571946	27	2.5	24	80	12	56	20	26	26	26	1.99
17575440--17575493	26	2.2	25	81	12	60	59	1	9	29	1.39
17576310--17576342	17	1.9	17	93	0	57	12	18	30	39	1.87
17584983--17585018	6	5.7	6	93	6	54	5	13	0	80	0.88
17585958--17586014	29	2.0	27	80	12	62	54	1	1	42	1.21
17594046--17594104	28	2.1	27	78	3	64	47	13	13	25	1.79
17595055--17595084	11	2.6	11	94	5	51	60	0	3	36	1.14
17597006--17597045	22	1.9	20	85	10	53	37	0	20	42	1.52
17602180--17602219	19	2.2	18	86	8	55	40	0	10	50	1.36
17605718--17605760	13	3.1	14	84	12	54	60	0	0	39	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17608501--17608668	54	3.1	54	96	0	309	24	11	13	50	1.75
17608800--17608875	24	3.2	23	79	5	89	42	9	6	42	1.63
17612424--17612551	49	2.6	49	80	8	127	35	7	3	53	1.46
17612462--17612584	25	5.0	25	68	21	80	36	7	2	53	1.42
17612691--17612732	19	2.2	19	86	0	57	30	7	4	57	1.47
17612699--17612744	19	2.5	19	92	3	76	28	10	0	60	1.30
17613892--17613920	12	2.5	12	94	5	51	24	13	0	62	1.32
17616343--17616372	14	2.1	14	93	0	51	36	10	6	46	1.64
17616984--17617079	41	2.3	41	81	0	120	28	23	18	29	1.98
17618726--17618750	13	1.9	13	100	0	50	40	24	4	32	1.73
17620504--17620556	22	2.4	22	81	6	63	52	3	5	37	1.43
17624497--17624553	15	3.5	15	76	17	60	49	1	1	47	1.22
17624513--17624551	19	2.1	19	85	0	51	51	0	2	46	1.14
17624763--17624792	6	5.0	6	100	0	60	83	0	0	16	0.65
17626521--17626581	31	2.0	32	83	6	81	36	9	8	45	1.67
17628862--17628940	13	6.5	13	72	16	71	41	0	10	48	1.37
17628862--17628940	36	2.2	36	90	0	131	41	0	10	48	1.37
17629652--17629693	7	6.1	7	97	2	77	11	45	0	42	1.41
17630470--17630657	95	2.0	95	96	0	349	18	25	21	34	1.96
17638758--17638792	18	1.9	18	94	0	61	40	8	34	17	1.80
17639637--17639688	13	3.9	13	80	7	52	40	0	9	50	1.35
17640047--17640118	31	2.3	31	80	0	90	30	16	22	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17643540--17643579	20	2.0	20	100	0	80	35	20	10	35	1.86
17660985--17661066	24	3.4	24	71	15	62	21	29	17	31	1.96
17661308--17661380	25	2.9	25	72	0	65	23	24	17	34	1.96
17679488--17679534	24	2.0	24	86	0	67	29	2	2	65	1.15
17684545--17684578	17	2.0	17	88	0	50	52	0	2	44	1.16
17686994--17687106	35	3.5	33	75	12	101	46	2	10	39	1.52
17687084--17687127	16	2.6	17	82	13	56	50	0	9	40	1.34
17687213--17687331	3	38.7	3	73	15	59	60	1	7	30	1.34
17687243--17687293	24	2.1	24	89	7	77	62	1	3	31	1.24
17688945--17689443	44	11.7	44	67	13	211	25	20	22	30	1.98
17688916--17689449	128	4.2	128	91	0	791	26	20	23	30	1.98
17695703--17695757	4	13.8	4	96	0	101	27	0	23	49	1.51
17695800--17695891	37	2.5	36	78	7	96	43	3	13	40	1.60
17695875--17695918	16	2.6	17	82	13	56	50	0	9	40	1.34
17697459--17697511	18	2.9	18	75	25	58	67	1	0	30	1.01
17698281--17698333	26	2.1	26	82	10	65	60	9	7	22	1.53
17700017--17700083	34	1.9	35	93	3	118	32	8	11	46	1.72
17701555--17701592	18	2.1	18	100	0	76	52	21	5	21	1.66
17703707--17703996	54	5.4	53	77	8	223	28	19	12	39	1.89
17703685--17703915	104	2.2	108	85	5	319	28	20	12	38	1.89
17703858--17704067	54	3.9	52	82	8	201	27	19	14	39	1.90
17707935--17707978	19	2.3	19	84	7	54	50	2	11	36	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17708799--17708845	21	2.2	22	85	11	62	53	2	0	44	1.12
17712849--17712901	26	2.0	26	85	3	70	32	24	16	26	1.97
17716431--17716478	21	2.3	21	100	0	96	72	0	14	12	1.11
17717940--17718092	76	2.0	76	98	0	297	26	13	24	35	1.93
17719134--17719168	17	2.1	17	94	0	61	14	28	45	11	1.79
17728033--17728072	20	2.1	19	90	4	62	45	12	10	32	1.75
17730683--17730711	13	2.1	14	93	6	51	82	0	10	6	0.83
17731538--17731575	6	6.3	6	96	0	67	15	0	2	81	0.80
17732984--17733031	20	2.4	21	86	6	64	45	4	6	43	1.48
17735707--17735737	15	2.1	15	93	0	53	54	6	0	38	1.26
17736258--17736283	11	2.4	11	100	0	52	23	7	0	69	1.14
17736340--17736394	19	3.0	17	77	15	56	29	1	3	65	1.20
17736339--17736398	17	3.2	18	73	21	61	30	1	3	65	1.19
17737658--17737698	3	13.3	3	89	5	64	31	2	0	65	1.05
17739479--17739830	182	1.9	182	98	0	686	32	12	15	39	1.85
17740660--17740691	16	2.0	16	93	0	55	15	18	28	37	1.92
17741142--17741185	19	2.3	20	84	7	56	29	20	9	40	1.83
17744050--17744097	20	2.3	20	85	3	60	66	0	20	12	1.24
17744057--17744099	14	3.0	14	80	12	52	65	0	23	11	1.25
17745374--17745551	44	4.0	44	75	13	161	30	14	24	30	1.95
17745378--17745551	89	2.0	88	93	1	294	29	14	24	31	1.94
17747471--17747822	182	1.9	182	98	0	677	33	12	15	39	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17751906--17751938	13	2.8	12	86	13	50	51	6	18	24	1.68
17752546--17752585	21	1.9	21	85	10	55	30	5	17	47	1.69
17759004--17759650	47	13.6	47	92	2	1010	32	7	29	29	1.86
17759004--17759650	96	6.8	94	92	3	1010	32	7	29	29	1.86
17759671--17759751	38	2.2	38	97	2	155	23	16	24	35	1.94
17766173--17766561	45	8.7	45	74	3	329	27	22	18	31	1.97
17766173--17766597	89	4.8	89	85	2	512	28	22	18	31	1.97
17766146--17766597	45	10.2	45	72	5	283	27	22	17	32	1.97
17766171--17766594	134	3.2	133	76	6	311	28	21	18	31	1.97
17766658--17767020	44	8.2	44	68	12	172	26	23	19	31	1.98
17766601--17767126	132	4.0	132	92	0	820	26	23	18	30	1.98
17767193--17767449	50	5.2	50	69	4	205	25	21	22	30	1.99
17767146--17767508	100	3.6	100	90	2	570	25	23	21	29	1.99
17767219--17767477	50	5.2	50	68	6	211	25	23	20	30	1.98
17767256--17767507	50	5.1	50	67	4	177	25	24	20	29	1.99
17768729--17768769	7	6.0	7	86	13	59	12	17	0	70	1.16
17768729--17768765	13	2.8	13	91	4	56	10	16	0	72	1.10
17768735--17768780	21	2.2	21	88	7	67	15	19	0	65	1.28
17771100--17771142	18	2.4	18	81	14	54	46	9	16	27	1.77
17774697--17775085	45	8.7	45	74	3	329	27	22	18	31	1.97
17774697--17775121	89	4.8	89	85	2	512	28	22	18	31	1.97
17774670--17775121	45	10.2	45	72	5	283	27	22	17	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17774695--17775118	134	3.2	133	76	6	311	28	21	18	31	1.97
17775182--17775544	44	8.2	44	68	12	172	26	23	19	31	1.98
17775125--17775650	132	4.0	132	92	0	820	26	23	18	30	1.98
17775717--17775973	50	5.2	50	69	4	205	25	21	22	30	1.99
17775670--17776032	100	3.6	100	90	2	570	25	23	21	29	1.99
17775743--17776001	50	5.2	50	68	6	211	25	23	20	30	1.98
17775780--17776031	50	5.1	50	67	4	177	25	24	20	29	1.99
17777259--17777300	7	6.0	7	86	10	59	11	16	0	71	1.14
17777257--17777300	21	2.2	20	91	4	70	13	18	0	68	1.22
17777266--17777311	21	2.2	21	88	7	67	15	19	0	65	1.28

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199