genome.fa.s20.2.7.7.80.10.50.1000.150.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Length:  58101237

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  150  of  199  ( 23844 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44380357--44380408	21	2.5	21	83	0	68	32	17	25	25	1.97
44381734--44381794	20	3.1	18	84	15	77	42	21	29	6	1.78
44388604--44388633	13	2.3	13	94	0	51	10	23	0	66	1.21
44392256--44392417	48	3.4	48	86	0	207	27	19	27	24	1.99
44399229--44399346	48	2.5	48	88	1	175	25	22	27	23	2.00
44408912--44409136	80	2.8	79	81	3	236	24	21	27	26	1.99
44408912--44409136	40	5.7	38	78	11	184	24	21	27	26	1.99
44408987--44409169	79	2.3	80	80	1	208	26	21	26	25	1.99
44416832--44416989	40	4.0	40	89	0	219	24	20	29	25	1.99
44416842--44417024	79	2.3	80	82	1	226	25	21	28	24	1.99
44446663--44446717	20	2.8	20	81	10	67	47	20	20	12	1.82
44452329--44452730	201	2.0	201	96	0	732	33	16	14	35	1.89
44455138--44455178	17	2.3	18	80	12	50	68	4	2	24	1.22
44457060--44457113	21	2.4	22	81	9	56	72	9	1	16	1.19
44461725--44461757	17	1.9	17	88	11	50	18	9	6	66	1.40
44463108--44463221	61	1.9	58	89	5	174	42	1	5	50	1.35
44463114--44463243	58	2.2	61	82	9	153	42	3	6	48	1.43
44466363--44467660	259	5.0	259	95	0	2245	31	15	18	34	1.92
44467925--44468053	5	26.0	5	95	1	224	40	0	1	58	1.08
44470667--44470809	41	3.4	42	77	7	148	36	25	15	22	1.93
44470837--44470921	41	2.1	41	88	0	125	24	24	17	32	1.97
44473945--44474012	15	4.2	16	73	12	68	73	2	19	4	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44473948--44474024	16	4.8	16	76	12	52	70	2	23	3	1.17
44474701--44474738	2	19.0	2	100	0	76	0	0	50	50	1.00
44492282--44492330	13	3.8	13	83	0	71	30	8	26	34	1.86
44496406--44496462	16	3.6	16	92	0	78	31	0	35	33	1.58
44496708--44496742	18	2.0	17	88	5	52	54	0	0	45	0.99
44496842--44496883	15	2.7	16	82	14	52	52	2	0	45	1.13
44496595--44496908	154	2.0	156	95	1	569	44	3	5	46	1.41
44496851--44496892	15	2.9	15	82	10	52	52	0	0	47	1.00
44496840--44497136	120	2.5	121	90	6	462	50	5	2	41	1.39
44496961--44497012	15	3.6	15	80	12	56	53	1	0	44	1.11
44496938--44497028	44	2.1	43	81	6	103	53	3	2	40	1.29
44496880--44497063	59	3.1	59	65	21	148	49	7	2	41	1.42
44497097--44497135	17	2.5	15	80	15	51	51	0	5	43	1.24
44497102--44497135	17	2.0	17	94	0	59	50	0	5	44	1.26
44497168--44497362	93	2.1	92	86	6	270	46	3	4	45	1.41
44502497--44502618	46	2.6	46	80	1	136	29	17	22	30	1.97
44505315--44505916	47	12.6	47	90	3	927	29	29	8	32	1.87
44505315--44505916	96	6.3	94	93	1	927	29	29	8	32	1.87
44505315--44505916	143	4.2	141	92	3	945	29	29	8	32	1.87
44509039--44509242	103	2.0	103	92	1	338	18	18	28	34	1.95
44509143--44509318	76	2.3	76	92	1	282	19	20	28	31	1.97
44509040--44509378	179	1.9	178	85	3	475	17	20	29	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44519683--44519823	75	1.9	75	89	0	219	36	22	2	38	1.69
44530073--44530121	25	2.0	25	100	0	98	22	12	12	53	1.71
44531133--44531176	18	2.4	18	80	0	52	36	6	29	27	1.83
44532472--44532521	20	2.5	20	81	12	66	12	24	6	58	1.56
44532697--44532881	50	3.7	49	76	7	151	23	27	21	28	1.99
44533844--44534066	47	4.7	47	88	2	299	39	14	18	27	1.90
44533952--44534172	113	1.9	114	93	2	383	38	14	19	27	1.90
44533890--44534225	159	2.1	161	92	1	568	38	14	19	26	1.91
44534052--44534328	46	6.0	46	95	0	484	37	14	21	26	1.92
44533844--44534271	205	2.1	208	90	3	675	38	14	19	27	1.91
44535146--44535269	43	2.9	43	78	9	137	29	28	20	21	1.98
44542144--44542346	46	4.4	46	88	3	284	39	14	18	27	1.89
44542130--44542346	93	2.3	93	88	3	312	40	14	17	27	1.89
44542226--44542452	113	2.0	115	92	3	379	38	13	19	27	1.90
44542171--44542505	159	2.1	160	91	3	541	39	13	19	27	1.89
44542332--44542562	46	5.0	46	93	0	374	38	13	20	27	1.91
44542125--44542551	205	2.1	207	89	3	653	38	14	19	27	1.90
44543383--44543508	43	2.9	43	77	16	152	30	27	19	22	1.98
44548591--44548732	25	5.7	25	76	5	144	26	20	21	30	1.98
44556305--44556347	18	2.4	18	88	0	68	27	18	16	37	1.92
44559483--44559523	18	2.2	19	91	4	66	34	12	0	53	1.38
44564658--44564708	24	2.1	24	85	3	66	29	0	1	68	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44571129--44571449	94	3.4	94	79	3	308	29	17	27	25	1.98
44582527--44582565	21	1.9	21	89	5	62	61	5	2	30	1.31
44587848--44587891	23	1.9	23	95	0	79	38	11	4	45	1.61
44588918--44588991	39	1.9	38	86	8	105	33	29	14	21	1.94
44593625--44593742	20	5.9	20	77	5	96	42	20	25	11	1.86
44593625--44593724	40	2.5	40	83	0	128	42	22	24	12	1.87
44593607--44593742	40	3.4	40	71	8	96	42	19	25	12	1.86
44594696--44594830	69	1.9	70	92	1	227	33	6	5	54	1.51
44600469--44600500	17	1.9	17	93	6	57	56	0	0	43	0.99
44604203--44604381	56	3.1	57	89	5	256	28	20	6	44	1.77
44606320--44606469	80	1.9	80	87	0	219	28	24	16	30	1.96
44606323--44606502	40	4.5	40	80	7	179	29	24	15	31	1.95
44611814--44611991	27	6.6	27	81	3	169	28	29	15	26	1.96
44611835--44611990	82	1.9	81	85	3	215	28	29	16	26	1.96
44615439--44615588	74	2.0	74	89	0	228	29	24	14	32	1.94
44615965--44616003	19	2.2	18	86	9	53	79	7	5	7	1.05
44623292--44623360	27	2.5	28	79	11	72	2	26	2	68	1.18
44626717--44626752	18	2.0	18	88	0	54	33	5	5	55	1.46
44631752--44631809	30	1.9	30	85	0	80	27	29	29	13	1.94
44644237--44644284	22	2.2	22	85	3	62	58	2	25	14	1.48
44644308--44644356	20	2.5	20	79	0	62	53	4	30	12	1.57
44646415--44646456	22	1.9	22	90	0	66	47	33	4	14	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44648744--44648774	16	1.9	16	93	0	53	41	0	22	35	1.54
44648764--44648856	44	2.1	46	84	8	120	31	4	25	38	1.75
44649008--44649077	21	3.3	21	75	13	63	52	2	0	44	1.15
44648964--44649075	57	2.0	55	81	15	131	51	4	0	43	1.21
44664303--44664342	16	2.5	16	88	8	55	30	0	0	70	0.88
44672554--44672579	3	8.7	3	100	0	52	0	0	34	65	0.93
44675704--44675762	29	2.0	29	93	0	100	15	28	20	35	1.93
44675704--44675785	29	2.9	29	85	1	85	14	26	21	36	1.93
44675795--44675868	28	2.6	29	89	4	114	13	27	18	40	1.88
44675708--44675892	79	2.3	79	83	1	228	14	27	19	38	1.90
44678393--44678417	3	8.3	3	100	0	50	32	0	0	68	0.90
44681439--44681467	3	9.7	3	100	0	58	34	31	0	34	1.58
44687307--44687771	251	1.9	251	88	2	702	29	17	20	32	1.96
44705505--44705740	81	2.9	80	85	5	307	46	9	12	31	1.74
44705506--44705832	162	2.0	166	82	5	405	46	9	12	32	1.73
44705688--44705996	87	3.7	79	79	11	255	43	9	14	32	1.78
44705526--44705996	165	2.9	166	79	6	401	44	9	14	32	1.76
44706110--44706157	23	2.1	22	88	11	71	70	0	0	29	0.87
44706749--44706785	11	3.4	11	100	0	74	40	8	0	51	1.32
44707034--44707083	20	2.5	20	90	0	73	56	10	4	30	1.51
44711990--44712056	21	3.2	22	72	16	61	43	16	23	16	1.87
44716770--44716912	57	2.4	58	87	9	191	30	20	26	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44717039--44717170	67	2.0	67	95	0	237	19	17	34	28	1.95
44718741--44718838	49	2.0	51	89	4	155	24	14	28	32	1.94
44726022--44726046	13	1.9	13	100	0	50	32	4	24	40	1.73
44728189--44728218	13	2.3	13	94	0	51	10	0	23	66	1.21
44730331--44730402	21	3.4	21	77	7	83	40	19	25	15	1.90
44731572--44731674	52	2.0	52	100	0	206	43	17	5	33	1.73
44737778--44737826	25	2.1	23	85	14	66	65	0	4	30	1.11
44737842--44737900	29	2.1	27	81	12	66	55	1	6	35	1.36
44737965--44738040	30	2.6	28	80	10	73	40	6	1	51	1.36
44738424--44738468	18	2.4	20	89	10	69	40	2	0	57	1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199