genome.fa.s20.2.7.7.80.10.50.1000.95.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Length:  58101237

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  95  of  199  ( 23844 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26641794--26641843	12	3.9	12	77	12	55	84	2	12	2	0.80
26641793--26641847	8	6.9	8	80	13	51	83	1	12	1	0.80
26642540--26642581	10	3.8	11	80	20	52	38	0	7	54	1.28
26648508--26648575	34	2.0	34	100	0	136	17	17	23	41	1.90
26659204--26659264	26	2.4	26	86	8	81	31	11	16	40	1.84
26674715--26674820	40	2.7	40	86	2	160	24	22	27	25	2.00
26696797--26697454	343	1.9	343	98	0	1271	38	18	13	30	1.89
26697614--26697748	38	3.4	38	71	15	101	40	15	1	42	1.56
26698986--26699028	11	3.8	11	80	17	52	30	2	2	65	1.18
26698989--26699032	23	1.9	23	90	0	70	31	2	4	61	1.28
26702432--26702463	16	1.9	16	93	6	55	71	0	3	25	1.00
26702746--26702799	18	3.1	18	79	15	58	29	3	0	66	1.09
26702822--26702852	7	4.3	7	92	8	53	41	0	0	58	0.98
26702757--26702857	9	11.5	8	73	18	53	32	1	1	63	1.17
26704746--26704779	17	2.0	17	88	0	50	79	5	0	14	0.91
26704746--26704796	27	1.9	26	88	4	75	74	7	0	17	1.05
26719573--26719610	5	7.6	5	88	11	60	18	0	0	81	0.69
26722795--26722864	19	3.6	19	78	14	72	54	7	0	38	1.28
26722835--26722870	19	1.9	19	94	5	65	55	5	0	38	1.23
26722873--26722941	20	3.4	20	78	9	77	57	0	2	39	1.13
26723044--26723074	16	1.9	16	93	0	53	38	6	6	48	1.55
26725948--26725986	4	9.8	4	100	0	78	48	25	0	25	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26737060--26737248	80	2.4	80	88	1	263	18	31	17	32	1.94
26737058--26737218	40	4.0	40	88	0	241	17	31	18	33	1.94
26737060--26737248	40	4.7	40	85	1	236	18	31	17	32	1.94
26737131--26737238	20	5.4	20	69	8	76	17	33	16	32	1.93
26737623--26737688	20	3.3	19	74	16	62	10	31	21	36	1.87
26738485--26738518	15	2.3	15	100	0	68	29	8	29	32	1.87
26742473--26742519	14	2.9	16	74	25	53	23	21	17	38	1.93
26747201--26747262	26	2.4	26	86	0	79	20	9	29	40	1.84
26749889--26749930	3	14.0	3	100	0	84	66	0	0	33	0.92
26750283--26750314	16	2.0	16	100	0	64	31	12	12	43	1.80
26763698--26764089	44	8.7	44	72	7	266	31	18	20	30	1.96
26763694--26764082	89	4.3	89	80	5	419	31	17	19	30	1.95
26763694--26764082	179	2.1	179	82	6	446	31	17	19	30	1.95
26764006--26764128	44	2.8	43	81	7	113	28	21	22	26	1.99
26772791--26772957	47	3.6	47	85	0	199	32	9	29	28	1.89
26774803--26775073	91	3.0	91	97	0	497	35	24	7	32	1.84
26777177--26777224	22	2.3	20	85	7	60	58	6	4	31	1.42
26786192--26786227	18	2.1	16	90	10	54	19	0	11	69	1.18
26796128--26796177	21	2.4	22	80	16	61	58	0	4	38	1.17
26796300--26796357	18	3.1	18	80	5	62	46	1	0	51	1.11
26796319--26796366	21	2.3	21	78	7	53	41	2	2	54	1.24
26800570--26800706	22	6.2	22	73	9	84	18	24	18	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26800592--26800684	44	2.1	44	85	0	123	19	25	18	36	1.94
26800610--26800708	22	4.5	22	79	5	92	18	26	20	35	1.95
26805069--26805120	24	2.2	24	89	0	77	36	3	9	50	1.54
26809286--26809337	24	2.2	24	89	0	77	34	5	9	50	1.59
26812489--26812557	11	6.3	11	80	9	79	20	36	0	43	1.52
26812481--26812553	22	3.3	21	81	11	67	23	32	0	43	1.54
26812481--26812569	33	2.8	32	80	10	92	22	33	1	42	1.61
26813307--26813380	38	1.9	38	100	0	148	36	21	16	25	1.94
26820808--26820851	3	14.7	3	100	0	88	0	34	0	65	0.93
26828085--26828109	8	3.1	8	100	0	50	36	0	28	36	1.58
26828029--26828327	123	2.3	128	89	6	448	29	16	23	31	1.96
26831472--26831595	56	2.2	56	88	2	178	42	7	13	36	1.72
26831620--26831667	23	2.4	19	83	16	53	31	0	25	43	1.55
26831618--26832314	29	25.3	29	86	9	955	29	0	27	43	1.55
26831618--26832309	81	8.4	81	84	9	838	29	0	26	43	1.55
26831705--26831791	23	3.9	20	89	7	84	33	0	19	47	1.50
26831827--26831869	23	2.0	21	95	4	68	30	0	20	48	1.50
26831937--26831979	23	2.0	21	95	4	68	30	0	20	48	1.50
26833729--26833770	20	2.1	20	82	8	50	54	11	2	30	1.49
26834639--26834703	30	2.2	30	91	5	105	64	0	1	33	1.03
26834646--26834685	21	1.9	21	84	0	53	65	0	0	35	0.93
26834737--26834808	22	3.3	22	94	3	119	36	0	33	30	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26846707--26846929	39	5.7	40	85	8	266	25	22	27	24	2.00
26846707--26846929	79	2.8	81	84	9	282	25	22	27	24	2.00
26846707--26846962	79	3.3	79	81	10	217	26	21	27	24	1.99
26854693--26854954	39	6.7	40	87	7	328	25	22	27	24	2.00
26861609--26861716	56	1.9	56	100	0	216	43	14	12	28	1.83
26861843--26861903	29	2.1	29	100	0	122	16	19	21	42	1.89
26865660--26865792	68	2.0	68	81	3	160	23	19	16	40	1.91
26871402--26871442	16	2.6	16	92	0	73	51	29	4	14	1.63
26874406--26874436	7	4.4	7	100	0	62	12	29	0	58	1.35
26876580--26876606	14	1.9	14	100	0	54	88	0	0	11	0.50
26876577--26876650	32	2.3	31	81	6	78	79	6	5	8	1.04
26878488--26878583	44	2.2	44	81	3	104	27	18	28	26	1.98
26880059--26880109	25	2.0	25	84	0	66	35	3	1	58	1.28
26881433--26881462	15	2.1	15	93	6	53	56	0	6	36	1.26
26883197--26883250	22	2.5	22	90	0	90	12	29	18	38	1.88
26888449--26888500	22	2.4	22	79	17	63	30	0	7	61	1.24
26890271--26890314	17	2.5	17	82	17	54	27	2	2	68	1.14
26890278--26890337	17	3.6	17	80	10	61	28	1	3	66	1.17
26890301--26890355	17	3.2	18	82	12	62	30	1	3	63	1.22
26890308--26890338	8	3.9	8	95	0	53	32	0	3	64	1.09
26894218--26894302	23	3.7	22	74	14	82	44	18	14	22	1.85
26894216--26894336	46	2.6	46	90	2	181	47	17	14	20	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26896443--26896518	38	2.0	38	97	0	143	47	3	19	28	1.67
26902712--26902935	114	2.0	114	94	0	394	37	15	15	31	1.89
26904094--26904167	24	3.0	25	86	5	107	43	4	27	25	1.72
26916035--26916097	24	2.6	25	76	2	74	44	7	23	23	1.80
26916782--26916810	14	2.1	14	100	0	58	34	6	13	44	1.71
26926433--26926659	40	5.7	40	90	4	316	26	27	22	24	2.00
26929663--26929687	12	2.1	12	100	0	50	68	0	16	16	1.22
26933222--26933246	7	3.6	7	100	0	50	44	0	44	12	1.41
26933668--26933705	3	12.7	3	100	0	76	34	0	31	34	1.58
26935628--26935658	3	10.0	3	93	6	53	0	0	67	32	0.91
26937193--26937235	12	3.5	12	84	6	59	58	0	0	41	0.98
26937193--26937239	6	7.7	6	77	13	51	55	0	0	44	0.99
26937193--26937239	18	2.5	19	83	12	62	55	0	0	44	0.99
26940725--26940768	19	2.3	19	96	0	79	25	13	6	54	1.63
26948130--26948154	11	2.3	11	100	0	50	24	0	0	76	0.80
26948219--26948295	29	2.6	29	82	12	86	25	10	14	49	1.75
26948978--26949013	19	1.9	18	88	5	54	77	0	19	2	0.88
26962962--26963035	31	2.6	30	79	14	84	54	1	2	41	1.23
26965910--26965951	20	2.2	19	91	4	66	59	0	7	33	1.25
26967166--26967224	29	2.0	29	86	0	82	35	33	8	22	1.84
26970752--26971175	125	3.4	125	84	5	586	30	16	22	30	1.96
26974371--26974421	25	2.0	25	92	0	84	41	13	0	45	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26974343--26974472	69	1.9	70	93	1	226	51	11	0	36	1.38
26974395--26974482	44	2.0	45	93	2	151	54	10	0	35	1.34
26976767--26976864	51	1.9	51	84	12	130	47	3	22	26	1.65
26976826--26976890	11	5.8	12	83	10	66	44	3	27	24	1.68
26977097--26977193	42	2.3	42	92	0	158	20	30	25	22	1.98
26978947--26979008	25	2.4	26	84	13	83	38	11	1	48	1.49
26979078--26979129	27	1.9	27	88	7	79	28	21	30	19	1.97
26979148--26979194	18	2.6	19	83	6	53	53	0	10	36	1.36
26979163--26979203	19	2.1	19	86	4	55	53	0	9	36	1.34
26979368--26979428	19	3.2	19	73	17	72	39	8	1	50	1.42

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199