genome.fa.s20.2.7.7.80.10.50.1000.194.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Length:  58101237

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  194  of  199  ( 23844 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56287697--56287744	21	2.3	21	92	0	78	54	18	8	18	1.68
56289209--56289250	20	2.1	20	86	0	57	47	0	7	45	1.30
56299464--56299516	19	2.8	20	75	16	58	60	3	0	35	1.15
56299436--56299487	27	1.9	27	84	7	70	59	1	3	34	1.27
56299432--56299496	27	2.4	27	73	16	64	63	1	3	32	1.19
56299534--56299592	19	3.2	19	72	13	59	50	5	5	38	1.46
56299540--56299592	19	2.9	18	80	5	70	47	5	5	41	1.51
56299983--56300007	5	5.0	5	100	0	50	60	0	0	40	0.97
56302315--56302456	70	2.0	70	100	0	284	41	16	19	21	1.90
56303569--56303618	23	2.2	22	86	10	73	38	18	18	26	1.93
56303578--56303622	23	2.0	23	100	0	90	40	15	17	26	1.90
56303576--56303627	23	2.4	21	84	12	77	42	15	15	26	1.87
56306961--56307035	30	2.5	30	82	2	78	34	10	8	46	1.68
56310028--56310076	24	2.0	24	84	7	64	30	16	20	32	1.94
56311564--56311595	11	3.0	11	95	4	57	37	0	0	62	0.95
56313886--56313927	19	2.2	20	82	4	50	30	7	11	50	1.66
56319151--56319233	33	2.5	33	76	7	87	26	18	18	37	1.93
56323198--56323236	7	5.7	7	90	6	62	25	0	0	74	0.82
56323262--56323304	20	2.0	22	86	8	63	27	0	4	67	1.10
56325140--56325164	8	3.1	8	100	0	50	24	0	0	76	0.80
56338154--56338186	15	2.2	15	89	10	50	66	6	0	27	1.15
56349901--56349940	21	1.9	21	85	10	55	45	2	0	52	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56350127--56350175	24	2.0	24	84	8	62	32	6	2	59	1.34
56354152--56354299	24	6.3	24	71	13	83	37	7	2	52	1.44
56367032--56367061	12	2.5	12	100	0	60	16	6	53	23	1.66
56368437--56368477	11	3.9	11	84	12	59	80	0	19	0	0.71
56369924--56370057	21	6.4	21	74	10	96	49	18	20	11	1.79
56369935--56370056	42	2.9	42	83	1	145	50	18	19	12	1.78
56373574--56373628	19	2.8	20	89	10	87	10	21	10	56	1.64
56374806--56374866	21	2.9	22	76	14	65	42	3	1	52	1.27
56374969--56374999	6	5.2	6	96	0	53	32	3	0	64	1.09
56375293--56375334	13	3.2	13	80	12	50	28	4	0	66	1.12
56376651--56376720	36	1.9	36	97	0	131	30	8	21	40	1.83
56380405--56380448	20	2.2	20	84	8	54	25	4	6	63	1.38
56394098--56394223	47	2.7	47	78	2	119	28	13	20	37	1.91
56401533--56401563	15	2.0	16	93	6	55	58	0	0	41	0.98
56407399--56407446	18	2.7	17	84	9	60	60	0	0	39	0.97
56407407--56407446	17	2.3	18	86	4	55	60	0	0	40	0.97
56439637--56439696	30	2.0	31	93	3	104	71	0	1	26	0.95
56440938--56440970	17	2.0	17	88	5	50	69	0	0	30	0.88
56443460--56443688	50	4.5	50	82	6	221	31	20	24	24	1.98
56443898--56443929	12	2.7	12	95	0	55	56	6	18	18	1.62
56447529--56447587	31	1.9	31	85	0	82	37	11	6	44	1.68
56448233--56448269	17	2.1	18	90	5	58	67	0	0	32	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56452689--56452713	13	1.9	13	100	0	50	44	0	0	56	0.99
56470810--56470868	26	2.3	27	79	8	68	32	11	15	40	1.83
56476397--56476468	26	2.8	26	74	18	78	34	0	2	62	1.10
56477427--56477451	7	3.6	7	100	0	50	24	0	0	76	0.80
56479048--56479094	25	1.9	25	86	4	69	51	4	4	40	1.41
56498838--56499015	61	2.9	59	71	16	150	43	1	3	51	1.28
56498930--56498988	26	2.3	25	85	8	82	40	0	1	57	1.09
56498943--56498998	15	4.0	15	73	17	57	44	0	0	55	0.99
56498969--56499037	22	3.3	22	69	22	67	43	2	0	53	1.15
56498915--56499054	17	8.6	17	67	23	61	45	1	0	52	1.14
56499282--56499349	16	4.2	16	92	0	118	35	36	0	27	1.58
56504235--56504382	73	2.0	73	98	0	287	31	10	12	45	1.76
56504772--56504836	3	21.7	3	100	0	130	67	0	32	0	0.91
56508196--56508228	14	2.5	14	90	9	52	81	0	18	0	0.68
56508839--56508897	29	2.1	29	81	9	68	22	13	1	62	1.39
56509085--56509121	18	2.1	18	90	10	58	32	0	5	62	1.18
56512630--56512805	45	4.0	45	87	1	248	26	16	25	32	1.96
56528153--56528184	16	2.0	17	88	11	50	0	18	0	81	0.70
56530223--56530263	18	2.3	18	91	0	64	14	41	0	43	1.45
56543628--56543669	18	2.3	18	84	8	50	21	4	0	73	1.01
56545693--56545734	21	2.0	21	90	0	66	23	21	40	14	1.90
56546878--56546912	18	1.9	18	88	11	54	54	34	2	8	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56549975--56550033	25	2.5	24	88	5	84	35	1	1	61	1.16
56550594--56550653	29	2.1	29	83	0	75	26	31	6	35	1.82
56554776--56554828	24	2.2	24	96	0	97	20	7	5	66	1.38
56556952--56556979	14	2.0	14	100	0	56	50	0	0	50	1.00
56559010--56559052	19	2.4	17	81	11	50	23	6	0	69	1.12
56563678--56563821	68	2.1	68	82	5	166	50	2	4	42	1.36
56569530--56569563	17	1.9	18	94	5	61	29	5	0	64	1.17
56572260--56572314	24	2.3	24	83	0	65	34	23	25	16	1.95
56572865--56572893	10	2.7	11	89	10	51	34	20	0	44	1.52
56577464--56577584	52	2.3	52	91	4	192	27	13	30	28	1.94
56577927--56577954	14	2.0	14	100	0	56	35	7	42	14	1.73
56588910--56588958	19	2.5	19	93	3	80	16	18	4	61	1.50
56602545--56602604	31	1.9	31	86	6	86	36	13	8	41	1.74
56602545--56602613	31	2.2	32	82	10	81	36	14	8	40	1.77
56607222--56607811	200	3.0	196	86	4	793	28	10	12	47	1.74
56612962--56612989	14	2.0	14	100	0	56	21	21	0	57	1.41
56616672--56616711	19	2.1	19	90	9	64	57	0	0	42	0.98
56628377--56628414	7	5.3	7	96	3	67	71	0	0	28	0.87
56628379--56628429	21	2.5	20	78	9	57	70	0	1	27	0.98
56629142--56629185	20	2.2	20	84	15	56	27	4	13	54	1.58
56631701--56631851	41	3.8	41	92	5	263	23	26	23	27	2.00
56636722--56636770	24	2.0	24	96	0	89	24	16	18	40	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56650142--56650770	312	2.0	312	90	0	988	18	25	15	40	1.90
56661231--56661275	6	7.5	6	89	0	72	20	33	15	31	1.93
56661231--56661275	18	2.5	18	100	0	90	20	33	15	31	1.93
56672812--56673437	313	2.0	313	100	0	1252	27	13	18	39	1.89
56686544--56686568	2	12.5	2	100	0	50	52	0	48	0	1.00
56691746--56691795	26	1.9	26	84	8	66	32	6	4	58	1.41
56695936--56696372	120	3.6	120	97	0	820	41	1	4	51	1.34
56696273--56696484	18	11.7	18	66	22	97	39	0	3	56	1.22
56696152--56696484	100	3.3	98	75	16	290	40	1	3	54	1.26
56696337--56696500	81	2.0	81	98	0	319	40	1	3	53	1.29
56696720--56696772	16	3.3	16	86	0	70	26	28	3	41	1.73
56697177--56697209	17	1.9	17	100	0	66	42	9	0	48	1.35
56697254--56697302	25	1.9	25	83	4	62	14	18	32	34	1.91
56699520--56699721	97	2.1	97	83	4	250	28	7	9	53	1.61
56699687--56699746	28	2.0	30	84	9	79	40	1	0	58	1.08
56700062--56700235	95	1.8	95	84	0	240	52	13	7	26	1.66
56702925--56702983	31	1.9	31	82	6	75	49	5	13	32	1.64
56706247--56706278	12	2.6	13	85	14	50	62	6	0	31	1.20
56711934--56711967	17	2.0	17	88	0	50	64	0	2	32	1.08
56713367--56713412	19	2.4	19	88	0	65	26	21	8	43	1.81
56715568--56715628	13	4.7	13	79	0	68	34	22	6	36	1.81
56719702--56719750	10	4.7	10	81	16	55	73	4	22	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56719729--56719775	22	2.1	22	84	11	60	63	0	36	0	0.94
56719696--56719766	26	2.7	28	76	12	78	69	2	28	0	1.03
56719737--56719836	43	2.2	46	79	15	120	59	2	39	0	1.09
56721085--56721135	3	17.0	3	100	0	102	66	0	0	33	0.92
56721457--56721532	36	2.1	36	80	11	84	51	1	9	38	1.42
56721856--56721896	20	2.2	19	86	8	57	63	17	14	4	1.47
56722045--56722102	22	2.7	21	76	10	53	41	17	3	37	1.66
56722289--56722749	158	2.9	159	92	2	741	54	7	10	27	1.61
56725034--56725060	8	3.4	8	100	0	54	51	25	0	22	1.48
56727982--56728123	76	1.9	76	88	2	214	52	11	5	30	1.61

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199