genome.fa.s20.2.7.7.80.10.50.1000.127.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Length:  58101237

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  127  of  199  ( 23844 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36680286--36680371	20	4.6	18	84	11	95	76	1	15	6	1.05
36680774--36680825	19	2.7	20	76	5	54	36	0	1	61	1.07
36680861--36680987	61	2.1	61	88	2	184	38	15	14	31	1.87
36682556--36682699	62	2.3	62	74	11	143	43	11	4	40	1.61
36683524--36683668	56	2.6	55	82	9	175	46	13	15	25	1.81
36684024--36684058	17	1.9	19	88	11	56	25	2	5	65	1.28
36689048--36689092	24	1.9	24	90	4	74	35	0	2	62	1.08
36689189--36689216	9	3.1	9	100	0	56	57	10	0	32	1.33
36689159--36689300	68	2.1	66	92	2	230	45	9	4	39	1.59
36689289--36689330	16	2.6	16	92	0	66	42	7	2	47	1.43
36689304--36689365	23	2.7	23	82	2	72	48	1	1	48	1.21
36692674--36692699	7	3.7	7	100	0	52	61	38	0	0	0.96
36694918--36695564	47	13.6	47	94	2	935	28	29	8	33	1.87
36694918--36695564	96	6.8	96	92	3	974	28	29	8	33	1.87
36696829--36697007	85	2.1	85	97	0	340	26	27	8	36	1.85
36701073--36701117	20	2.3	20	77	14	58	71	0	20	8	1.12
36705347--36705408	24	2.6	24	86	0	88	35	30	6	27	1.82
36707174--36707235	26	2.4	26	91	0	97	43	14	9	32	1.78
36707174--36707249	26	2.9	26	86	0	89	40	11	15	31	1.84
36713311--36713340	16	1.9	16	93	6	53	30	0	20	50	1.49
36716192--36716221	15	2.0	15	93	0	51	30	10	26	33	1.89
36724530--36724621	45	2.0	45	85	8	125	47	7	5	39	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36736017--36736084	34	2.0	34	100	0	136	26	35	8	29	1.87
36756279--36756354	37	2.1	37	89	0	116	26	32	18	22	1.97
36756475--36756913	47	9.2	47	88	3	644	29	30	7	31	1.86
36756475--36756915	96	4.6	95	92	2	670	29	30	7	31	1.86
36758545--36758622	39	2.0	39	94	0	138	37	29	10	23	1.88
36760208--36760286	25	3.2	25	90	0	131	31	17	20	30	1.96
36763181--36763403	40	5.7	40	82	7	224	25	21	28	25	1.99
36763234--36763401	79	2.1	78	84	3	212	25	21	28	25	1.99
36763257--36763436	79	2.3	80	81	2	204	26	21	28	24	1.99
36771074--36771296	40	5.6	39	79	10	193	25	21	27	26	1.99
36771154--36771331	79	2.2	80	80	3	191	24	21	28	25	1.99
36775182--36775370	50	3.7	50	78	7	164	27	20	28	23	1.99
36775623--36775671	20	2.5	20	78	15	57	55	6	26	12	1.60
36784420--36784495	29	2.6	28	81	2	89	22	36	22	18	1.95
36786393--36786434	21	1.9	23	90	9	70	30	11	14	42	1.81
36786879--36786973	47	2.0	47	95	0	172	37	10	15	35	1.82
36796367--36796434	20	3.2	22	77	10	70	13	32	22	32	1.92
36806063--36806202	70	2.0	70	97	0	262	27	15	16	40	1.88
36810654--36810700	20	2.3	20	85	10	60	29	19	12	38	1.89
36811397--36811421	13	1.9	13	100	0	50	40	0	12	48	1.40
36812958--36813017	23	2.6	22	73	17	59	38	5	1	55	1.32
36813024--36813067	21	2.1	21	82	0	52	29	6	0	63	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36815332--36815407	30	2.9	24	77	20	89	57	5	3	32	1.39
36815335--36815392	30	1.9	30	92	3	98	56	6	3	32	1.42
36816393--36816436	18	2.4	19	85	11	56	34	0	9	56	1.31
36816936--36816988	20	2.6	20	88	8	72	60	5	1	32	1.31
36826844--36826872	9	3.0	10	90	10	51	58	0	20	20	1.39
36827129--36827192	26	2.5	26	89	0	92	35	7	20	35	1.82
36831398--36831432	18	1.9	18	88	0	52	25	25	0	48	1.51
36845121--36845158	19	2.0	19	85	10	51	68	0	2	28	1.03
36845293--36845333	13	3.1	14	82	10	50	53	2	0	43	1.13
36846683--36846730	10	4.9	10	76	2	53	66	2	6	25	1.26
36848707--36848757	5	9.6	5	80	16	50	78	0	1	19	0.85
36848706--36848757	21	2.4	21	83	3	59	76	1	1	19	0.97
36848728--36848759	6	5.7	6	96	3	50	81	0	0	18	0.70
36848707--36848756	26	1.9	26	88	8	75	78	0	2	20	0.86
36848707--36848759	12	4.9	11	78	17	58	77	0	1	20	0.87
36852200--36852235	15	2.5	14	86	8	54	44	8	0	47	1.33
36854480--36854547	9	7.6	9	94	0	109	23	10	26	39	1.87
36854472--36854547	27	2.8	27	93	0	125	25	10	25	39	1.87
36865973--36866005	13	2.5	13	95	0	57	42	0	0	57	0.98
36865971--36866028	26	2.2	25	79	8	62	50	0	1	48	1.11
36866282--36866318	19	1.9	18	89	10	56	45	0	0	54	1.00
36867489--36867521	16	2.1	16	94	0	57	39	6	27	27	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36867790--36867831	20	2.1	20	100	0	84	50	0	0	50	1.00
36870073--36870105	16	2.1	16	94	0	57	45	0	15	39	1.46
36870795--36870855	20	3.3	20	69	21	69	60	0	31	8	1.26
36876346--36876379	16	2.1	16	89	10	52	29	2	0	67	1.05
36888086--36888123	20	2.0	20	85	15	53	57	0	7	34	1.28
36888086--36888123	19	1.9	19	85	15	51	57	0	7	34	1.28
36889335--36889457	20	6.3	19	67	16	81	13	29	18	38	1.90
36899002--36899072	26	2.7	27	82	4	83	45	4	16	33	1.67
36903306--36903484	95	1.9	95	83	4	236	21	21	18	37	1.94
36906721--36906768	16	3.2	16	76	23	52	39	0	8	52	1.32
36911841--36911878	16	2.3	16	90	4	58	42	2	0	55	1.14
36913762--36913795	17	1.9	18	94	5	61	23	0	0	76	0.79
36913860--36913916	23	2.5	22	77	8	69	47	1	8	42	1.45
36915991--36916031	20	2.0	20	100	0	82	43	36	14	4	1.67
36916630--36916724	47	2.0	47	89	4	147	31	18	7	42	1.78
36920831--36920859	13	2.1	14	93	6	51	62	10	6	20	1.50
36921319--36921400	28	3.0	27	89	1	110	41	8	21	28	1.82
36921349--36921408	28	2.1	28	87	0	84	41	10	23	25	1.85
36922284--36922419	68	2.0	68	100	0	272	33	7	19	39	1.79
36931683--36931859	26	6.8	26	81	3	185	27	23	10	38	1.87
36931699--36931858	54	3.0	54	81	5	166	28	21	9	41	1.84
36937152--36937204	17	3.1	16	76	10	52	26	7	16	49	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36970084--36970261	88	2.0	88	95	0	320	22	18	28	30	1.97
36972516--36972581	3	22.0	3	96	0	123	1	33	0	65	1.02
36974297--36974355	30	2.0	30	83	6	75	52	11	3	32	1.54
36992530--36992710	25	7.6	25	69	10	128	44	21	17	17	1.87
36992555--36992735	22	7.8	22	70	12	112	45	20	16	16	1.85
36992504--36992732	94	2.4	94	85	5	318	44	21	17	15	1.86
36992535--36992732	47	4.2	47	86	2	281	44	21	17	16	1.87
36995117--36995170	27	2.0	27	100	0	108	33	7	22	37	1.82
36997741--36997802	29	2.2	29	85	8	83	56	0	24	19	1.42
36998583--36998651	21	3.4	21	76	15	90	34	5	13	46	1.67
36998562--36998659	40	2.5	40	98	1	189	35	8	12	43	1.72
37001706--37001751	15	3.1	15	84	12	67	84	8	4	2	0.83
37014346--37014699	94	3.8	95	80	4	344	34	15	21	28	1.94
37014330--37014699	187	2.0	188	81	3	433	34	16	20	28	1.95
37018483--37018544	31	2.0	31	93	0	106	37	27	9	25	1.87
37018739--37018931	41	4.7	41	82	3	210	21	26	21	30	1.98
37026273--37026343	27	2.4	29	79	18	83	30	29	12	26	1.93
37026294--37026352	27	2.2	27	90	0	100	33	28	10	27	1.89
37026539--37026738	41	4.9	41	85	3	242	20	28	21	29	1.98
37033346--37033424	37	2.1	37	88	4	115	25	30	18	25	1.98
37033543--37034114	47	12.1	47	94	1	910	29	30	8	31	1.88
37035745--37035805	28	2.2	28	85	5	81	45	0	3	50	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37035847--37035880	17	2.0	17	88	11	52	44	2	0	52	1.16
37035846--37036258	120	3.4	120	94	1	713	41	2	5	51	1.37
37035980--37036165	59	3.1	59	69	17	184	40	1	5	52	1.34
37036082--37036123	16	2.6	17	81	7	52	40	0	0	59	0.97
37036220--37036261	15	2.7	16	82	14	52	45	0	2	52	1.13
37036211--37036252	15	2.9	15	82	10	52	47	0	0	52	1.00
37036392--37036493	45	2.5	40	76	18	109	31	29	4	34	1.79
37036406--37036495	45	2.0	44	89	6	137	33	28	5	32	1.80
37036475--37036523	16	3.1	16	90	0	80	22	34	6	36	1.79
37036643--37036695	27	2.0	27	85	10	74	30	26	15	28	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199