genome.fa.s20.2.7.7.80.10.50.1000.35.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Length:  58101237

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  35  of  199  ( 23844 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10831232--10831257	12	2.2	12	100	0	52	30	61	0	7	1.24
10832085--10832153	26	2.6	26	90	2	102	59	0	24	15	1.37
10833043--10833080	3	12.7	3	94	0	67	34	2	0	63	1.09
10833382--10833441	29	2.1	30	82	14	74	33	5	6	55	1.48
10834941--10835015	23	3.3	21	79	18	80	28	1	29	41	1.64
10834979--10835075	23	4.2	23	74	1	86	34	5	22	38	1.77
10834924--10835077	46	3.4	45	77	5	132	31	3	24	39	1.74
10834994--10835102	46	2.4	45	82	3	119	34	7	22	35	1.82
10835576--10835633	29	2.0	29	100	0	116	48	10	13	27	1.75
10840787--10840820	7	4.9	7	100	0	68	14	14	14	55	1.69
10842193--10842218	3	8.7	3	100	0	52	69	0	0	30	0.89
10843118--10843149	15	2.2	15	94	5	57	50	0	0	50	1.00
10844799--10844888	44	2.0	44	100	0	180	35	8	13	42	1.75
10844864--10844934	28	2.4	30	95	4	128	35	12	11	40	1.79
10855390--10855415	2	13.0	2	100	0	52	50	0	0	50	1.00
10855771--10855806	3	12.0	3	100	0	72	66	0	0	33	0.92
10855930--10855980	3	17.3	3	75	4	50	60	3	1	33	1.26
10875265--10875300	19	1.9	18	88	5	54	55	0	0	44	0.99
10875782--10875806	2	12.5	2	100	0	50	52	0	0	48	1.00
10877960--10878020	21	2.9	21	78	9	61	55	1	1	40	1.19
10881070--10881232	86	1.9	85	85	6	222	46	7	5	40	1.55
10882448--10882516	31	2.2	31	94	0	120	44	7	18	28	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10882457--10882524	31	2.2	31	91	0	109	45	10	16	27	1.79
10882750--10882792	15	2.8	15	80	16	52	46	2	2	48	1.27
10890040--10890101	31	2.0	31	84	9	81	54	9	9	25	1.63
10890061--10890126	31	2.1	30	81	10	71	54	10	10	24	1.66
10892931--10893030	51	2.0	50	94	3	175	39	19	11	31	1.86
10895067--10895092	9	2.9	9	100	0	52	80	7	11	0	0.89
10895064--10895113	15	3.3	15	78	10	57	76	4	18	2	1.04
10895063--10895114	9	5.4	9	80	13	50	73	3	21	1	1.10
10902689--10902741	26	2.0	26	89	7	81	45	0	0	54	0.99
10902866--10902907	17	2.5	17	92	7	68	23	4	4	66	1.30
10904052--10904108	18	3.1	18	84	5	60	63	3	1	31	1.22
10904052--10904093	20	2.0	20	86	4	57	57	4	0	38	1.20
10904077--10904113	18	2.0	18	89	5	56	72	2	2	21	1.09
10910849--10910916	31	2.2	31	89	0	100	42	4	14	38	1.66
10913136--10913185	13	3.2	16	70	18	52	48	0	0	52	1.00
10913196--10913225	14	2.1	14	93	0	51	30	0	3	66	1.07
10921478--10921532	28	2.0	28	92	0	92	27	25	20	27	1.99
10933374--10933419	24	1.9	24	81	0	56	47	0	2	50	1.13
10941416--10941469	23	2.4	21	82	17	72	51	1	0	46	1.11
10958156--10958256	54	1.9	52	82	11	125	43	1	1	52	1.23
10966233--10966288	24	2.4	22	83	16	76	53	1	0	44	1.11
10966241--10966319	29	2.6	30	73	13	74	58	2	0	39	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10968481--10968545	30	2.2	30	97	0	121	38	3	30	27	1.72
10981247--10981652	188	2.1	190	83	9	495	44	18	11	24	1.84
10985729--10985774	24	2.0	21	84	12	56	65	15	4	15	1.43
10992380--10992448	31	2.2	31	84	5	86	43	8	13	34	1.74
10999214--10999568	172	2.0	176	96	2	655	35	16	17	30	1.92
11000046--11000124	39	2.0	39	97	0	149	35	22	7	34	1.83
11007125--11007157	11	2.8	12	86	9	50	69	0	0	30	0.88
11007990--11008034	21	2.3	18	85	14	63	33	0	4	62	1.15
11008616--11008671	7	8.3	7	75	13	55	53	0	1	44	1.11
11008616--11008671	13	4.1	14	73	13	55	53	0	1	44	1.11
11008606--11008694	31	2.7	32	83	15	103	50	0	1	48	1.08
11011088--11011139	25	2.1	24	82	10	61	69	1	1	26	1.10
11012391--11012426	15	2.2	18	85	14	51	61	27	11	0	1.30
11013469--11013534	29	2.3	29	78	5	71	39	6	4	50	1.48
11015460--11015506	19	2.5	19	86	6	60	27	19	8	44	1.79
11019229--11020130	45	20.1	45	84	1	1031	31	14	21	32	1.93
11019225--11020122	90	10.0	90	88	1	1237	31	14	21	32	1.93
11020080--11020245	88	1.9	89	80	6	194	27	16	26	29	1.97
11022913--11022971	31	1.9	31	85	0	82	49	8	3	38	1.50
11031104--11031139	16	2.3	17	81	18	51	58	0	0	41	0.98
11033851--11033892	18	2.3	18	87	0	57	54	2	4	38	1.34
11033935--11033982	13	3.6	13	83	11	53	56	6	4	33	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11034004--11034052	25	2.0	25	83	0	62	55	2	6	36	1.37
11034130--11034154	3	8.3	3	100	0	50	68	0	0	32	0.90
11038097--11038155	12	5.2	12	80	12	70	71	1	0	27	0.96
11038107--11038149	21	2.0	21	90	4	68	67	2	0	30	1.03
11038107--11038161	21	2.6	21	80	11	60	67	3	0	29	1.08
11038606--11038649	23	1.9	23	95	0	79	27	4	25	43	1.74
11039233--11039280	3	16.7	3	91	8	82	31	0	0	68	0.90
11039598--11039729	29	4.6	30	74	11	89	34	20	6	38	1.77
11039598--11039670	27	2.7	27	82	6	76	38	20	1	39	1.61
11039908--11039944	16	2.3	16	100	0	74	70	0	24	5	1.08
11040099--11040149	20	2.5	19	84	15	66	80	5	13	0	0.89
11040244--11040312	4	18.2	4	78	16	76	75	0	24	0	0.81
11040245--11040310	7	9.4	7	76	17	57	77	0	22	0	0.77
11040246--11040312	11	6.0	11	84	3	80	76	0	23	0	0.79
11041023--11041345	17	17.8	18	70	14	177	32	14	8	43	1.77
11041028--11041346	36	8.8	36	70	14	113	33	14	8	43	1.76
11041395--11041429	16	2.2	16	94	0	61	37	2	11	48	1.54
11041409--11041456	21	2.3	21	80	16	64	47	6	10	35	1.63
11041418--11041469	20	2.7	19	85	11	70	48	7	11	32	1.68
11041496--11041587	36	2.6	35	81	6	105	39	6	9	44	1.63
11046230--11046255	5	5.2	5	100	0	52	42	19	19	19	1.90
11047175--11047214	21	2.0	20	85	5	53	47	0	30	22	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11053129--11053242	32	3.6	32	67	23	105	42	20	18	18	1.89
11054018--11054071	27	2.0	27	100	0	108	40	14	3	40	1.64
11055599--11055630	9	3.6	9	91	0	55	87	12	0	0	0.54
11055599--11055662	14	4.8	13	77	7	56	84	6	9	0	0.78
11055600--11055667	27	2.6	25	80	11	73	83	5	10	0	0.79
11055599--11055668	19	3.7	19	75	9	63	84	5	10	0	0.78
11056517--11057091	78	7.3	78	84	5	662	27	15	20	36	1.93
11056517--11057103	233	2.5	230	84	5	716	27	16	20	36	1.93
11056517--11057091	155	3.7	153	83	8	626	27	15	20	36	1.93
11057429--11057455	8	3.4	8	100	0	54	88	11	0	0	0.50
11057936--11057991	23	2.5	22	86	13	80	80	5	12	1	0.96
11057936--11057991	20	2.5	22	88	11	80	80	5	12	1	0.96
11058084--11058130	4	12.2	4	82	17	64	78	0	21	0	0.75
11058084--11058145	27	2.3	27	86	10	83	77	0	22	0	0.77
11058084--11058143	11	5.7	11	77	15	65	78	0	21	0	0.75
11058084--11058141	18	3.1	18	87	7	80	77	0	22	0	0.77
11058557--11058597	16	2.6	16	80	0	55	14	2	4	78	1.03
11058892--11059213	17	17.8	18	69	17	161	31	13	10	43	1.79
11058893--11058944	20	2.7	19	83	13	63	34	15	11	38	1.83
11058994--11059228	110	2.2	110	78	12	243	31	14	11	43	1.80
11059102--11059227	37	3.5	36	77	14	127	34	12	11	42	1.79
11059267--11059344	17	4.3	17	76	17	52	35	8	11	43	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11059248--11059334	18	4.7	18	75	17	72	41	8	9	41	1.66
11059359--11059451	36	2.7	33	85	12	125	39	7	9	43	1.66
11060436--11060491	22	2.5	23	82	2	69	51	1	1	44	1.22
11060467--11060506	16	2.5	16	91	0	62	47	2	7	42	1.45
11060509--11060628	59	2.1	59	90	1	197	41	5	8	45	1.56
11060694--11060737	24	1.9	24	90	9	74	61	0	0	38	0.96
11061130--11061224	40	2.3	42	78	7	115	30	9	14	45	1.77
11065490--11065539	3	17.3	3	79	8	59	66	4	0	30	1.10
11065490--11065536	18	2.7	18	87	6	71	65	4	0	29	1.11
11069365--11069430	31	2.2	31	86	2	89	37	21	15	25	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199