genome.fa.s20.2.7.7.80.10.50.1000.118.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Length:  58101237

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  118  of  199  ( 23844 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33688965--33689181	84	2.5	86	81	7	235	39	1	13	45	1.53
33689049--33689081	16	2.1	16	100	0	66	30	0	24	45	1.53
33689067--33689426	34	10.9	34	71	21	212	40	0	11	47	1.45
33689141--33689182	22	1.9	22	95	0	75	40	0	11	47	1.40
33689107--33689388	56	5.0	56	86	10	423	40	0	11	47	1.45
33689195--33689227	16	2.1	16	100	0	66	30	0	24	45	1.53
33689047--33689482	146	3.0	138	87	8	527	39	0	11	47	1.46
33689105--33689463	112	3.1	112	82	14	441	39	0	11	48	1.44
33689253--33689298	22	2.1	22	95	0	83	41	0	10	47	1.38
33689309--33689359	22	2.4	22	90	3	86	41	0	9	49	1.36
33689365--33689448	22	4.1	22	75	17	99	41	0	9	48	1.35
33689213--33689483	94	2.9	94	87	8	355	40	1	10	48	1.45
33689365--33689482	56	2.0	56	90	6	182	40	0	9	49	1.41
33691020--33691056	11	3.4	11	96	0	65	54	5	2	37	1.38
33692365--33692401	10	3.7	10	92	0	65	43	13	0	43	1.44
33693057--33693093	10	3.7	10	92	0	65	43	13	0	43	1.44
33693840--33693872	17	1.9	17	93	0	57	33	30	24	12	1.91
33693856--33693968	42	2.7	42	94	0	199	32	23	23	21	1.98
33694288--33694338	21	2.5	20	78	9	57	1	43	19	35	1.63
33699845--33699949	25	4.2	25	76	11	106	32	2	19	45	1.65
33699856--33700106	9	28.8	9	69	13	150	31	3	20	45	1.67
33700251--33700386	53	2.6	53	83	4	193	45	5	11	38	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33700354--33700405	13	4.0	13	92	0	77	42	1	9	46	1.47
33700475--33700882	100	4.1	100	96	0	748	49	3	7	39	1.48
33701284--33701348	7	9.3	7	80	6	78	75	10	10	3	1.15
33701284--33701348	21	3.1	21	88	4	96	75	10	10	3	1.15
33701297--33701363	14	4.8	14	85	5	82	77	8	8	4	1.11
33701284--33701364	28	2.9	27	81	5	90	75	9	9	4	1.18
33701352--33701395	18	2.4	19	84	3	54	56	13	15	13	1.67
33702149--33702173	10	2.5	10	100	0	50	32	8	12	48	1.69
33702672--33703084	199	2.1	198	87	1	603	34	19	16	29	1.94
33703472--33703564	47	2.0	47	84	0	123	47	3	7	41	1.48
33703551--33703597	18	2.6	18	86	6	69	14	4	2	78	0.99
33703634--33703660	14	1.9	14	100	0	54	44	7	0	48	1.31
33703731--33703918	95	2.0	96	83	7	240	42	28	1	28	1.63
33703887--33703981	7	13.6	7	78	4	84	29	46	2	22	1.63
33703887--33703977	14	6.5	14	77	8	96	28	47	2	21	1.63
33703888--33703981	21	4.5	21	77	5	100	29	45	2	22	1.64
33704080--33704118	12	3.1	12	89	10	60	33	51	0	15	1.44
33704091--33704130	21	1.9	21	94	0	71	35	47	0	17	1.48
33704080--33704119	14	3.1	13	92	7	64	32	52	0	15	1.43
33704512--33704729	114	1.9	113	79	8	246	30	22	15	31	1.95
33704665--33704902	75	3.2	74	84	7	277	32	22	16	28	1.95
33704928--33705067	74	1.9	75	85	4	194	29	22	17	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33704549--33705090	263	2.1	262	95	2	989	31	21	15	30	1.95
33704739--33705202	188	2.5	188	86	3	632	31	21	16	30	1.95
33704984--33705580	227	2.6	227	89	3	882	28	21	16	33	1.95
33704988--33705585	114	5.3	113	74	9	540	28	21	16	33	1.95
33707566--33707804	41	5.8	41	72	8	182	39	22	21	15	1.91
33707544--33707805	82	3.2	82	86	4	368	40	22	22	14	1.91
33708390--33708427	19	2.0	19	100	0	76	31	21	21	26	1.98
33713351--33713387	15	2.5	15	90	0	56	29	56	5	8	1.51
33721154--33721829	342	2.0	342	97	0	1282	37	14	11	36	1.82
33722496--33722545	21	2.2	21	82	10	55	44	18	14	24	1.86
33723943--33724106	83	2.0	83	95	2	294	44	2	17	35	1.62
33723745--33724173	179	2.3	186	84	6	568	41	1	17	39	1.60
33723731--33724190	96	4.9	95	82	10	522	41	1	17	40	1.59
33724200--33724462	126	2.1	124	90	2	402	34	16	20	28	1.94
33737433--33737469	15	2.5	15	86	0	56	37	0	0	62	0.96
33740755--33740841	40	2.2	40	95	0	156	42	28	5	22	1.77
33750955--33750979	13	1.9	13	100	0	50	52	0	0	48	1.00
33759370--33759394	13	1.9	13	100	0	50	32	16	0	52	1.44
33760050--33760241	94	2.0	95	88	3	289	32	13	14	39	1.85
33760735--33760767	17	1.9	17	88	11	50	60	9	12	18	1.57
33762718--33762778	32	1.9	32	86	0	86	36	8	14	40	1.76
33767280--33767343	22	3.0	21	76	15	67	29	20	15	34	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33771206--33771241	15	2.4	15	95	0	63	25	13	8	52	1.68
33774566--33774837	9	29.0	9	68	17	94	34	2	2	59	1.26
33774703--33774763	11	6.2	10	77	12	56	31	1	1	65	1.12
33774619--33774775	38	4.2	37	74	17	103	37	2	2	57	1.26
33774790--33774839	17	2.9	17	88	11	68	30	0	2	68	1.01
33774790--33774848	26	2.2	27	87	6	84	30	1	1	66	1.12
33775320--33775854	201	2.7	201	86	3	720	40	12	10	36	1.77
33775918--33775956	20	2.0	20	90	5	62	33	25	23	17	1.96
33782607--33782643	3	12.3	3	100	0	74	67	0	0	32	0.91
33783300--33783383	22	3.9	22	74	12	77	16	8	19	55	1.65
33783282--33783383	42	2.4	43	80	11	122	17	9	17	54	1.69
33783282--33783394	20	5.4	20	77	9	111	18	11	16	53	1.73
33783476--33783532	21	2.8	20	75	5	60	22	10	12	54	1.68
33783526--33783571	22	2.1	22	83	0	56	17	10	13	58	1.62
33783472--33783588	20	5.7	20	71	13	76	20	11	13	53	1.71
33784824--33784850	7	3.9	7	100	0	54	44	0	29	25	1.54
33789587--33789670	19	4.4	18	82	8	80	38	8	17	35	1.80
33789589--33789663	19	3.8	19	91	6	123	37	9	16	37	1.80
33789590--33789652	21	3.1	21	95	4	112	38	9	14	38	1.78
33789602--33789686	21	4.0	22	79	14	81	37	7	16	38	1.76
33789652--33789696	23	2.0	23	86	4	65	33	4	15	46	1.66
33789861--33789899	19	2.0	21	85	10	55	15	10	5	69	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33790287--33790328	4	11.0	4	82	10	52	23	0	2	73	0.94
33790287--33790327	11	3.6	11	83	3	55	21	0	2	75	0.92
33790519--33790721	100	2.0	100	97	1	383	33	8	6	50	1.60
33790969--33791010	19	2.2	20	82	4	50	30	7	11	50	1.66
33793272--33793303	15	2.1	15	94	0	55	68	9	6	15	1.36
33796170--33796352	40	4.6	40	82	7	124	24	20	27	27	1.99
33796223--33796352	40	3.3	40	86	3	138	23	20	28	27	1.99
33804030--33804213	40	4.6	40	82	7	124	25	20	27	26	1.99
33804030--33804213	81	2.3	81	79	7	189	25	20	27	26	1.99
33804083--33804213	39	3.3	39	84	4	163	24	20	28	26	1.99
33809592--33809632	21	1.9	22	85	5	57	34	0	0	65	0.93
33810795--33810839	24	1.9	24	90	4	74	31	2	4	62	1.27
33810796--33810846	24	2.2	24	82	3	59	35	1	3	58	1.28
33816484--33816524	22	1.9	22	85	5	57	53	2	2	41	1.27
33816509--33816632	9	13.4	9	70	16	58	63	4	3	29	1.28
33816532--33816595	21	3.2	21	73	24	66	67	3	1	28	1.15
33816509--33816632	17	6.7	19	66	19	57	63	4	3	29	1.28
33816700--33816731	16	2.0	16	93	0	55	71	0	0	28	0.86
33818415--33818592	27	6.6	27	84	3	205	29	28	15	26	1.96
33818436--33818591	82	1.9	81	88	3	233	29	28	15	26	1.96
33839700--33839729	14	2.1	15	93	6	53	20	10	13	56	1.65
33841470--33841640	93	1.8	93	91	2	281	28	27	21	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33841467--33841637	46	3.7	46	76	12	179	29	26	21	22	1.99
33841464--33841656	46	4.2	46	70	20	127	28	27	20	23	1.99
33843872--33843917	25	1.9	24	82	8	58	30	13	15	41	1.85
33845045--33845089	14	3.3	14	84	6	65	48	13	0	37	1.42
33845072--33845172	41	2.4	41	95	3	175	39	14	11	33	1.83
33857492--33857546	15	3.8	14	80	7	65	74	1	21	1	1.01
33888298--33888393	49	2.0	49	93	4	167	22	27	10	39	1.87
33888735--33888792	30	1.9	30	82	0	71	15	25	22	36	1.94
33892897--33892957	25	2.4	25	94	2	104	39	18	8	34	1.80
33898361--33898414	5	10.8	5	86	7	65	24	33	0	42	1.55

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199