genome.fa.s20.2.7.7.80.10.50.1000.149.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Length:  58101237

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  149  of  199  ( 23844 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44001064--44001424	197	1.8	197	85	1	508	27	22	29	21	1.99
44007258--44007316	20	3.0	20	78	9	75	10	28	22	38	1.86
44029501--44029742	50	4.7	50	78	6	184	27	22	26	23	1.99
44029945--44029993	20	2.5	20	81	15	66	57	6	24	12	1.58
44030102--44030129	14	2.0	14	100	0	56	14	21	0	64	1.29
44034658--44035154	47	10.6	47	92	2	718	27	30	9	32	1.88
44036609--44036728	56	2.1	56	98	0	231	22	23	9	45	1.81
44041501--44041541	21	2.0	21	85	4	57	48	4	2	43	1.37
44051524--44051644	36	3.4	36	83	5	120	15	12	28	43	1.83
44051564--44051646	36	2.3	36	91	0	130	14	9	32	43	1.78
44056780--44056837	22	2.7	21	78	10	64	43	10	0	46	1.38
44057043--44057097	6	9.0	6	89	2	83	18	20	0	61	1.34
44057708--44057746	6	6.3	6	96	3	69	15	15	2	66	1.36
44066643--44066754	56	2.0	56	92	0	188	29	28	8	33	1.86
44069677--44069725	20	2.5	20	89	0	71	24	12	4	59	1.50
44069771--44069817	24	2.0	24	91	0	76	38	17	17	27	1.91
44071451--44071484	14	2.5	13	86	9	50	41	20	11	26	1.87
44072986--44073163	27	6.6	27	77	6	137	30	28	15	25	1.96
44072986--44073163	54	3.3	54	78	7	164	30	28	15	25	1.96
44080992--44081169	27	6.6	27	77	6	137	30	28	15	25	1.96
44080992--44081169	54	3.3	54	78	7	164	30	28	15	25	1.96
44083087--44083124	18	2.1	18	95	0	67	57	2	5	34	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44083082--44083128	18	2.4	20	79	17	62	61	2	6	29	1.32
44083366--44083435	26	2.7	27	75	16	67	22	44	18	14	1.86
44097705--44097759	25	2.2	25	84	9	69	52	1	0	45	1.11
44102309--44102368	20	3.2	19	84	11	63	15	21	43	20	1.88
44102335--44102370	17	2.1	18	94	5	65	13	16	41	27	1.87
44102601--44102701	27	3.7	27	75	7	80	45	21	11	20	1.83
44102656--44102880	27	8.3	27	85	3	276	42	20	17	19	1.90
44102656--44102879	54	4.1	54	89	1	324	42	20	17	19	1.89
44102666--44102879	81	2.6	81	90	0	320	41	21	17	19	1.90
44102666--44102905	81	3.0	83	84	8	280	41	20	17	20	1.91
44103113--44103167	26	2.1	26	82	0	65	25	20	20	34	1.96
44103285--44103367	33	2.5	33	92	0	130	25	31	20	22	1.98
44104382--44104440	30	2.0	30	87	9	86	61	10	16	11	1.57
44107996--44108036	20	2.0	20	100	0	82	24	31	9	34	1.88
44109207--44109240	16	2.1	16	94	0	59	47	8	11	32	1.71
44112563--44112614	25	2.1	25	100	0	104	23	21	15	40	1.91
44113747--44113795	25	2.0	25	100	0	98	40	28	14	16	1.87
44119953--44120085	41	3.2	41	89	0	203	20	21	7	51	1.72
44124089--44124146	25	2.3	25	77	11	64	53	1	0	44	1.10
44128733--44128852	56	2.1	56	96	0	222	45	9	22	22	1.80
44129979--44130124	40	3.6	42	80	10	164	24	22	26	26	2.00
44129979--44130157	80	2.2	80	81	6	195	26	21	25	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44129979--44130157	40	4.5	40	77	8	143	26	21	25	26	2.00
44136597--44136716	56	2.1	56	98	0	231	45	9	23	22	1.81
44137843--44138021	80	2.2	80	80	8	188	25	21	26	26	1.99
44137843--44137988	40	3.6	41	83	9	185	23	21	27	26	1.99
44141887--44141924	16	2.4	16	90	0	58	31	0	34	34	1.58
44141903--44142012	45	2.6	43	77	9	120	34	5	28	31	1.80
44142134--44142188	25	2.2	25	84	9	69	52	1	0	45	1.11
44146515--44147200	50	13.5	50	83	3	841	21	30	20	26	1.98
44146515--44147089	200	2.9	200	96	0	1044	21	30	21	26	1.98
44146978--44147200	112	2.0	112	94	0	392	21	32	19	26	1.97
44151895--44152005	39	2.8	40	80	9	111	36	8	9	45	1.67
44158091--44158185	29	3.3	28	77	14	113	30	17	23	28	1.97
44158091--44158211	57	2.1	57	90	0	188	31	17	21	29	1.96
44166995--44167191	48	4.1	48	79	0	223	22	27	20	28	1.99
44178558--44178582	12	2.1	12	100	0	50	24	40	28	8	1.83
44179077--44179134	29	2.2	25	84	12	71	6	15	0	77	0.97
44185125--44185247	51	2.4	50	77	11	124	32	3	8	55	1.47
44185449--44185685	82	2.9	82	85	5	302	32	12	8	46	1.72
44185791--44185821	12	2.5	13	94	5	55	19	6	25	48	1.72
44185797--44185851	28	1.9	29	85	3	76	29	10	20	40	1.86
44190670--44190786	51	2.4	48	83	9	146	32	2	9	55	1.45
44195331--44195374	18	2.4	19	84	7	63	38	0	11	50	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44198234--44198277	22	2.0	23	86	4	63	43	9	2	45	1.48
44198736--44198786	26	2.0	24	85	7	66	68	1	0	29	1.00
44199556--44199590	17	2.0	18	94	5	63	74	0	0	25	0.82
44199726--44199784	10	5.6	10	76	9	55	64	1	1	32	1.13
44199767--44199859	25	3.7	25	68	18	66	62	1	4	32	1.22
44199836--44199871	10	3.7	10	88	3	56	63	0	0	36	0.94
44204648--44204784	66	2.1	66	88	0	202	28	20	17	33	1.95
44207661--44207712	20	2.8	18	76	21	54	50	3	3	42	1.39
44211203--44211380	89	2.0	89	94	0	311	23	32	18	25	1.97
44225004--44225053	5	10.0	5	87	8	75	42	18	0	40	1.50
44230868--44230916	20	2.7	18	79	20	57	51	2	4	42	1.32
44238403--44238506	39	2.7	39	84	3	129	38	7	7	46	1.61
44239497--44239558	29	2.1	29	85	5	81	27	20	9	41	1.84
44245319--44245379	26	2.3	26	77	0	68	27	18	13	40	1.87
44255098--44255145	24	2.0	24	100	0	96	33	29	16	20	1.95
44259247--44259380	45	3.1	43	84	9	166	23	17	26	32	1.97
44268667--44268755	46	1.9	46	86	8	128	32	20	20	26	1.97
44273613--44273689	36	2.1	36	83	9	95	59	5	3	31	1.37
44274641--44274684	22	2.0	22	100	0	88	45	13	13	27	1.81
44286969--44287149	86	2.1	86	98	1	355	40	4	7	47	1.52
44287223--44287432	51	3.9	51	83	15	278	46	18	7	27	1.75
44287247--44287384	63	2.2	63	94	2	244	49	17	5	28	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44287223--44287432	114	1.8	114	94	2	377	46	18	7	27	1.75
44287379--44287488	33	3.3	33	81	13	129	42	18	8	30	1.79
44290543--44290629	28	3.1	28	69	17	74	43	1	2	52	1.21
44290834--44290868	18	2.0	17	88	5	52	45	0	0	54	0.99
44290686--44290943	136	1.9	138	89	1	403	46	3	3	46	1.39
44290816--44291135	155	2.1	155	94	1	561	45	7	2	43	1.46
44290696--44290973	136	2.0	137	82	4	339	46	5	3	44	1.43
44290989--44291039	18	3.0	18	81	18	65	45	0	0	54	0.99
44290989--44291041	16	3.2	16	82	15	56	43	0	0	56	0.99
44291002--44291043	16	2.6	16	88	7	59	47	0	0	52	1.00
44291019--44291052	16	2.1	16	88	0	50	44	0	2	52	1.16
44291168--44291277	39	2.7	40	81	8	114	36	29	3	30	1.75
44291258--44291293	16	2.2	16	95	0	63	38	33	0	27	1.57
44292298--44292335	18	2.1	18	95	0	67	57	0	7	34	1.28
44296057--44296085	5	5.8	5	100	0	58	82	0	17	0	0.66
44304947--44304978	15	2.1	15	94	0	55	15	6	9	68	1.36
44306081--44306107	14	1.9	14	100	0	54	51	0	11	37	1.37
44306632--44306748	62	1.9	61	84	5	157	42	4	4	48	1.42
44308907--44308960	22	2.5	21	81	6	63	31	5	0	62	1.18
44311535--44311565	2	15.5	2	100	0	62	51	0	48	0	1.00
44317319--44317349	12	2.6	12	94	0	53	32	0	0	67	0.91
44317319--44317360	15	3.2	13	83	12	50	38	0	0	61	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44327969--44328123	45	3.4	44	86	3	211	40	19	19	20	1.91
44327984--44328150	45	4.0	40	75	19	144	39	20	19	20	1.93
44329641--44329677	18	2.1	18	90	10	58	72	2	18	5	1.15
44331447--44331518	33	2.1	35	87	10	114	37	6	13	41	1.72
44342650--44342765	41	2.8	42	86	5	155	30	25	18	25	1.98
44343675--44343718	15	3.1	14	80	12	54	43	6	0	50	1.29
44357897--44358014	40	3.0	40	75	9	116	34	18	33	13	1.90
44357898--44358016	20	5.9	19	71	5	67	36	17	32	13	1.89
44369534--44369575	21	1.9	21	85	9	57	35	0	9	54	1.33
44372224--44372340	43	2.7	43	81	4	137	21	29	12	36	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199