genome.fa.s20.2.7.7.80.10.50.1000.94.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Length:  58101237

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  94  of  199  ( 23844 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26387712--26387796	41	2.1	41	97	0	161	30	22	14	32	1.93
26388910--26388948	20	2.0	19	85	5	51	56	17	5	20	1.60
26390220--26390290	27	2.6	27	84	6	90	39	9	2	47	1.51
26390352--26390418	27	2.5	27	92	0	107	29	29	25	14	1.95
26390461--26390618	4	37.0	4	75	18	101	70	0	29	0	0.92
26390450--26390618	18	9.8	17	71	20	79	69	0	30	0	0.93
26390450--26390546	30	3.2	30	80	15	110	68	0	31	0	0.90
26390466--26390656	48	3.9	49	78	10	155	70	0	28	0	0.91
26390460--26390662	38	5.6	36	76	17	156	70	0	29	0	0.91
26390464--26390619	66	2.3	65	79	15	160	70	0	28	0	0.92
26390492--26390626	5	26.2	5	71	16	82	72	0	26	0	0.90
26390493--26390648	43	3.5	45	75	15	146	70	0	28	0	0.92
26391481--26392234	160	4.7	158	71	14	532	49	7	12	30	1.69
26391446--26392234	319	2.5	320	93	2	1336	49	8	12	30	1.69
26397478--26397516	19	2.2	18	90	9	62	48	17	0	33	1.48
26397596--26397634	20	2.0	21	85	10	55	66	10	0	23	1.22
26397860--26397929	28	2.6	25	82	12	95	48	0	7	44	1.30
26403214--26403261	24	2.0	24	100	0	96	58	8	4	29	1.46
26404178--26404220	13	3.5	13	81	18	65	34	0	16	48	1.46
26404176--26404222	23	2.0	23	100	0	94	36	0	17	46	1.48
26409800--26410058	42	6.2	41	80	7	263	31	23	20	24	1.98
26409800--26410058	84	3.1	83	83	6	299	31	23	20	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26410501--26410567	21	3.2	21	95	0	116	4	41	17	35	1.70
26410501--26410587	42	2.1	42	82	4	104	3	42	17	36	1.66
26414593--26414677	7	12.0	7	75	7	64	45	40	0	14	1.44
26414922--26414956	17	2.1	17	89	5	54	60	8	0	31	1.27
26415003--26415178	95	1.9	95	86	1	255	24	24	18	32	1.97
26415086--26415745	114	5.8	113	86	1	788	26	22	18	32	1.97
26415798--26415890	40	2.3	40	85	3	116	13	19	26	39	1.89
26416150--26416181	5	6.4	5	100	0	64	81	0	0	18	0.70
26416686--26416746	31	2.0	31	100	0	122	39	16	16	27	1.90
26425272--26425411	70	2.0	70	95	0	253	21	15	12	50	1.76
26439019--26439043	11	2.3	11	100	0	50	16	24	0	60	1.36
26441510--26441539	12	2.5	12	88	0	51	20	56	23	0	1.42
26441819--26441846	9	3.1	9	100	0	56	57	10	0	32	1.33
26441789--26441998	68	3.1	68	96	1	379	46	8	4	40	1.54
26441889--26441914	9	2.9	9	100	0	52	57	7	0	34	1.27
26441987--26442028	16	2.6	16	92	0	66	42	7	2	47	1.43
26442002--26442063	23	2.7	23	82	2	72	48	1	1	48	1.21
26447560--26447594	14	2.5	14	90	0	52	25	8	20	45	1.79
26453430--26453474	10	4.4	10	83	5	54	42	13	0	44	1.43
26453430--26453474	21	2.2	20	84	4	54	42	13	0	44	1.43
26463350--26463400	26	2.0	26	96	0	93	35	17	17	29	1.93
26466639--26466698	18	3.0	21	79	11	65	66	1	8	23	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26468385--26468422	16	2.4	16	100	0	76	44	15	10	28	1.80
26468393--26468429	16	2.3	16	90	0	56	45	13	10	29	1.77
26472121--26472503	47	8.1	47	94	0	640	32	9	30	28	1.88
26472054--26472503	94	4.8	94	93	2	707	32	8	29	28	1.87
26472054--26472503	141	3.2	141	92	3	707	32	8	29	28	1.87
26472622--26472766	37	3.9	37	93	0	236	22	20	31	24	1.98
26474030--26474354	120	2.7	119	89	1	479	26	20	26	26	1.99
26474030--26474341	40	7.8	40	88	0	435	26	20	26	26	1.99
26478350--26478685	47	7.1	47	97	0	609	33	8	28	29	1.86
26478283--26478685	94	4.3	94	94	2	667	33	7	28	30	1.86
26478535--26478610	22	3.3	22	64	10	62	32	10	27	28	1.90
26478283--26478685	141	2.9	141	93	4	667	33	7	28	30	1.86
26478804--26478948	37	3.9	37	90	0	218	22	20	31	26	1.98
26482975--26483042	22	3.1	22	84	0	82	30	26	0	42	1.56
26483014--26483072	30	2.0	30	89	0	91	30	33	0	35	1.58
26483044--26483085	22	1.9	22	90	0	66	33	30	0	35	1.58
26483127--26483184	29	2.0	30	89	3	91	37	0	1	60	1.07
26483130--26483192	29	2.1	30	85	2	83	38	0	1	60	1.07
26484936--26484970	18	1.9	18	88	0	52	28	34	8	28	1.87
26485453--26485527	23	3.2	24	83	5	91	45	28	0	26	1.54
26485492--26486012	33	16.7	32	83	9	597	48	23	0	27	1.51
26485485--26486012	94	5.7	94	86	7	706	48	24	0	27	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26485749--26485832	28	3.1	24	88	9	78	47	27	0	25	1.52
26485510--26486033	122	4.3	122	90	6	782	48	23	0	27	1.51
26485871--26485954	28	3.1	24	85	9	69	47	26	0	26	1.52
26489222--26489454	125	1.9	125	88	3	353	33	23	14	28	1.94
26489199--26489464	125	2.1	125	84	3	349	31	23	14	30	1.94
26493434--26493463	7	4.3	7	100	0	60	60	0	13	26	1.34
26493505--26493590	44	2.0	44	83	4	111	48	1	10	39	1.45
26493881--26493924	21	2.0	23	86	8	65	54	2	9	34	1.44
26493886--26493931	21	2.2	21	77	11	51	60	0	6	32	1.22
26495079--26495344	133	2.0	133	99	0	523	11	9	34	44	1.73
26495360--26495388	7	4.1	7	100	0	58	0	0	41	58	0.98
26509230--26509305	22	3.4	23	83	10	104	25	30	1	43	1.63
26509229--26509305	33	2.3	35	82	8	97	24	31	1	42	1.63
26509229--26509305	11	6.8	12	76	18	85	24	31	1	42	1.63
26509265--26509364	51	2.0	51	88	4	148	26	27	3	44	1.69
26509656--26509913	124	2.1	126	91	2	412	28	24	17	29	1.97
26512478--26512601	64	1.9	64	86	3	178	43	5	10	40	1.63
26515825--26515875	23	2.2	23	89	6	77	29	9	19	41	1.84
26516916--26517017	9	11.4	9	90	2	161	35	23	8	32	1.86
26517017--26517125	37	3.0	37	87	1	166	48	13	3	33	1.60
26517369--26517427	7	8.3	7	81	3	73	52	13	16	16	1.75
26517416--26517473	29	2.0	29	100	0	116	27	10	24	37	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26517459--26517485	13	2.1	13	100	0	54	7	14	33	44	1.73
26517688--26517724	20	1.9	19	89	10	58	21	16	16	45	1.84
26523286--26523469	99	1.9	98	94	1	323	39	11	14	34	1.82
26538452--26538516	17	3.7	17	76	13	69	69	4	4	21	1.25
26550716--26550771	11	4.9	11	73	16	51	1	25	0	73	0.93
26550722--26550780	29	2.1	28	81	12	68	5	22	1	71	1.15
26560450--26560488	20	2.0	20	100	0	78	23	5	20	51	1.67
26560544--26560605	27	2.2	28	78	13	67	4	24	0	70	1.06
26580394--26580571	27	6.6	27	83	3	196	26	15	28	29	1.96
26580391--26580571	82	2.2	81	84	2	238	27	16	27	29	1.97
26586043--26586130	39	2.2	40	80	8	99	20	23	26	29	1.99
26592945--26593005	25	2.7	23	87	10	81	39	0	1	59	1.08
26594162--26594196	18	1.9	18	88	0	52	5	2	5	85	0.81
26595318--26595369	19	2.7	19	100	0	104	30	11	21	36	1.89
26600652--26600676	10	2.5	10	100	0	50	92	0	8	0	0.40
26602394--26603605	44	27.5	45	70	8	414	26	22	26	25	2.00
26602272--26603348	88	12.2	88	90	0	1582	25	23	27	23	2.00
26603351--26603734	44	8.8	44	82	7	433	29	14	25	30	1.95
26603352--26603762	133	3.1	133	92	1	666	30	14	26	29	1.95
26603349--26603734	177	2.2	174	86	4	535	30	14	25	30	1.95
26604107--26604178	19	3.7	19	90	7	117	34	11	16	37	1.84
26614311--26614395	6	14.2	6	100	0	170	50	16	0	32	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26615251--26615304	25	2.2	25	83	6	65	16	9	7	66	1.42
26615251--26615312	26	2.4	26	81	5	72	16	9	6	67	1.39
26618177--26618202	12	2.2	12	100	0	52	23	7	15	53	1.67
26620464--26620867	47	8.6	47	92	1	646	29	29	8	32	1.87
26620464--26620867	143	2.9	141	92	1	673	29	29	8	32	1.87
26632199--26632251	3	18.0	3	86	11	74	30	0	1	67	1.01
26632361--26632427	3	23.0	3	79	11	77	29	4	1	64	1.22
26632361--26632407	17	2.8	17	96	3	87	31	0	0	68	0.90
26637801--26637854	25	2.2	25	83	6	65	18	25	24	31	1.97
26641792--26641843	18	3.0	17	78	10	52	82	3	11	1	0.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199