genome.fa.s20.2.7.7.80.10.50.1000.45.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Length:  58101237

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  45  of  199  ( 23844 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13416710--13417235	262	2.0	264	92	0	876	27	16	26	29	1.97
13417695--13417751	23	2.5	22	86	8	71	38	40	7	14	1.73
13419962--13420162	106	1.9	106	95	0	366	29	20	19	30	1.97
13436059--13436104	12	3.6	12	78	16	56	34	0	0	65	0.93
13448318--13448985	132	5.1	131	96	1	1185	27	16	26	29	1.97
13448318--13448985	263	2.5	263	95	1	1196	27	16	26	29	1.97
13449437--13449493	23	2.5	22	86	8	71	38	40	7	14	1.73
13451162--13451205	18	2.3	20	81	18	58	31	15	0	52	1.44
13451701--13451901	106	1.9	106	93	0	348	29	19	19	30	1.97
13468242--13468399	82	1.9	82	82	7	196	42	10	12	34	1.77
13473287--13473330	24	1.9	24	90	9	74	36	0	2	61	1.09
13473430--13473457	9	3.1	9	100	0	56	57	10	0	32	1.33
13473400--13473608	67	3.1	68	94	2	361	46	9	3	40	1.54
13473497--13473524	9	3.1	9	100	0	56	57	10	0	32	1.33
13473597--13473638	16	2.6	16	92	0	66	42	7	2	47	1.43
13473612--13473673	23	2.7	23	82	2	72	48	1	1	48	1.21
13474697--13474742	22	2.1	22	83	0	56	10	15	0	73	1.08
13474689--13474758	28	2.5	28	75	15	72	8	18	0	72	1.09
13481336--13481467	42	3.1	42	86	0	147	15	22	15	46	1.83
13481335--13481439	21	5.0	21	72	0	75	17	22	14	45	1.84
13481359--13481487	42	3.0	43	83	5	156	13	24	15	46	1.82
13481456--13481515	21	2.9	21	76	0	66	21	25	11	41	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13488619--13488690	21	3.5	20	67	7	54	12	22	15	50	1.77
13488552--13488725	42	4.1	42	78	7	156	17	18	16	47	1.83
13490917--13490979	27	2.3	27	86	0	81	14	25	22	38	1.92
13491077--13491163	45	1.9	45	85	0	120	25	21	12	40	1.89
13493320--13493349	14	2.1	14	93	0	51	53	0	0	46	1.00
13500202--13500243	21	2.0	21	85	0	57	35	0	26	38	1.57
13502960--13502994	18	1.9	18	94	0	61	54	2	5	37	1.39
13503207--13503288	36	2.2	37	81	12	98	53	2	8	35	1.45
13503419--13503483	3	21.3	3	80	3	76	60	1	7	30	1.34
13510053--13510117	4	15.5	4	77	17	62	21	4	0	73	1.00
13511087--13511132	19	2.5	20	82	10	53	76	4	2	17	1.06
13511683--13511717	15	2.4	15	90	4	54	48	0	8	42	1.33
13512717--13512778	22	2.7	22	87	5	79	46	1	1	50	1.20
13512752--13512804	16	3.3	16	91	0	88	45	3	5	45	1.45
13512854--13513022	83	2.0	85	95	3	306	39	4	7	48	1.51
13513069--13513094	10	2.6	10	100	0	52	50	11	0	38	1.39
13515370--13515626	43	6.0	43	79	2	185	26	26	19	27	1.99
13515425--13515630	86	2.4	86	87	0	277	25	27	18	28	1.98
13515697--13515742	21	2.2	21	88	0	65	6	45	13	34	1.69
13517743--13517935	9	22.8	9	74	12	176	31	1	21	45	1.59
13517748--13517778	16	1.9	16	93	0	53	29	3	16	51	1.59
13517734--13517935	25	8.0	25	83	3	178	32	0	21	45	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13517703--13517931	34	6.7	35	71	14	126	32	1	20	45	1.60
13517743--13517935	34	5.5	34	71	17	151	31	1	21	45	1.59
13518050--13518439	64	6.1	64	72	12	298	35	4	14	46	1.64
13518246--13518521	9	30.6	9	66	15	106	33	3	17	45	1.66
13518194--13518375	82	2.2	83	92	1	294	35	4	16	43	1.70
13518196--13518530	146	2.3	146	88	2	485	34	4	16	44	1.68
13518364--13518521	82	1.9	82	90	2	255	34	3	17	44	1.65
13518246--13518526	18	17.1	18	65	24	133	33	3	16	45	1.66
13520233--13520539	147	2.1	149	79	8	317	33	24	16	25	1.96
13522784--13523039	113	2.4	106	89	7	385	43	14	5	36	1.68
13525053--13525098	14	3.2	14	77	17	58	15	8	54	21	1.68
13525221--13525264	22	2.0	22	86	8	63	54	4	0	40	1.21
13526576--13526677	30	3.4	30	94	0	177	16	29	34	19	1.94
13532961--13533039	26	3.0	26	75	17	65	62	2	1	34	1.17
13540739--13540826	39	2.2	39	87	2	122	10	2	21	65	1.33
13542740--13542867	61	2.1	60	86	4	177	33	16	17	32	1.93
13543558--13543592	3	11.7	3	100	0	70	34	0	0	65	0.93
13546296--13546333	20	2.0	20	89	5	60	52	7	0	39	1.31
13546309--13546358	26	1.9	26	87	0	73	46	4	0	50	1.20
13546323--13546364	20	2.2	19	87	8	59	54	0	0	45	0.99
13546332--13546374	20	2.2	20	91	0	68	55	2	0	41	1.12
13546902--13546950	25	2.0	25	83	0	62	26	22	14	36	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13552341--13552379	18	2.0	20	85	9	55	56	5	0	38	1.22
13552352--13552412	31	2.0	31	86	0	86	55	0	0	44	0.99
13556695--13556745	24	2.2	24	77	22	56	33	0	5	60	1.21
13558067--13558130	13	4.9	13	75	7	58	37	4	18	39	1.72
13558273--13558338	30	2.1	30	83	8	78	50	3	4	42	1.38
13559902--13559934	15	2.2	15	89	10	50	42	0	0	57	0.98
13565397--13565448	18	3.1	17	81	10	70	50	13	9	26	1.72
13566305--13566381	41	1.9	40	89	7	120	23	16	31	28	1.96
13568503--13568765	134	2.0	131	94	2	463	34	19	18	28	1.95
13575572--13575635	23	2.8	23	73	13	60	37	10	4	46	1.60
13576392--13576485	46	2.0	46	100	0	188	35	8	8	47	1.64
13579205--13579250	20	2.3	21	81	11	60	65	2	2	30	1.16
13579737--13579788	18	2.9	17	75	13	52	40	0	1	57	1.10
13580338--13580376	19	2.1	19	85	0	51	33	20	2	43	1.65
13581283--13581313	9	3.4	9	90	0	53	38	22	12	25	1.90
13592231--13592276	24	1.9	24	90	0	74	39	4	15	41	1.67
13592289--13592398	55	2.0	55	89	0	166	35	10	10	42	1.75
13592570--13592645	30	2.5	30	79	12	84	26	9	6	57	1.54
13596178--13596242	30	2.2	30	94	0	112	24	3	13	58	1.50
13600102--13600146	23	2.0	23	86	4	65	24	8	2	64	1.34
13600887--13601030	73	2.0	73	92	0	243	34	17	19	28	1.94
13601767--13601809	19	2.2	21	88	12	65	60	4	2	32	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13604191--13604222	16	1.9	17	93	6	57	37	21	0	40	1.54
13604383--13604553	43	4.0	42	77	13	170	33	28	16	21	1.95
13604383--13604541	84	1.9	84	84	7	216	32	28	17	22	1.96
13606402--13606493	43	2.1	43	100	0	184	17	15	6	60	1.55
13610009--13610048	21	1.9	21	89	0	62	32	2	2	62	1.22
13610482--13610723	51	4.8	50	74	7	195	30	25	16	27	1.96
13610474--13610719	101	2.5	98	81	7	298	30	25	16	28	1.96
13612909--13612947	21	2.0	20	90	10	62	69	7	7	15	1.35
13614519--13615299	99	7.9	99	93	0	1303	25	23	20	30	1.99
13614519--13615299	298	2.6	298	93	0	1332	25	23	20	30	1.99
13614519--13615301	397	2.0	398	92	0	1318	25	23	20	30	1.99
13626974--13627048	36	2.1	36	85	5	98	50	0	8	41	1.32
13627206--13627244	21	2.0	20	90	10	62	69	7	7	15	1.35
13629517--13629549	17	1.9	17	93	0	57	24	42	21	12	1.86
13642976--13643020	17	2.6	18	82	3	56	33	4	8	53	1.52
13653061--13653099	15	2.6	16	92	8	64	51	5	28	15	1.64
13653985--13654016	16	2.1	15	94	5	55	84	0	15	0	0.63
13654008--13654569	116	5.0	113	86	8	813	39	12	16	31	1.87
13654484--13654658	88	2.0	88	94	2	307	40	14	12	32	1.83
13654652--13655071	108	3.8	107	78	12	422	38	14	13	34	1.85
13654921--13654945	13	1.9	13	100	0	50	80	4	0	16	0.87
13656364--13656457	24	3.8	25	75	9	77	61	7	4	26	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13656577--13656641	25	2.6	25	97	2	121	63	3	6	27	1.33
13658100--13658206	44	2.4	43	83	4	124	25	20	23	30	1.98
13658130--13658220	44	2.1	44	85	0	119	25	24	21	28	1.99
13658208--13658541	174	1.9	174	90	1	535	27	25	17	28	1.98
13658573--13659820	45	27.8	45	80	5	1333	31	24	15	28	1.96
13660362--13660448	45	1.9	45	83	0	111	51	10	10	27	1.68
13660729--13660793	25	2.7	24	81	9	71	3	15	1	80	0.92
13660737--13660794	18	3.3	17	83	11	64	3	17	1	77	0.99
13661226--13661291	15	4.5	14	78	14	53	3	10	4	81	0.94
13661250--13661289	21	1.9	21	89	0	62	2	12	2	82	0.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199