genome.fa.s20.2.7.7.80.10.50.1000.177.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Length:  58101237

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  177  of  199  ( 23844 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51576842--51576892	6	8.2	6	79	16	50	74	0	3	21	0.98
51583030--51583156	37	3.3	38	84	6	166	40	9	11	37	1.74
51583078--51583339	17	14.5	17	66	20	88	40	10	12	35	1.78
51583019--51583156	40	3.5	38	85	5	170	41	10	12	36	1.76
51583077--51583183	56	1.9	56	86	3	153	41	10	11	37	1.75
51583083--51583197	56	2.1	57	83	4	146	46	9	11	33	1.72
51583240--51583339	18	5.7	18	76	14	68	41	11	15	33	1.82
51584095--51584149	6	9.5	6	77	15	53	0	21	0	78	0.76
51584248--51584304	22	2.6	22	78	10	64	1	12	10	75	1.12
51584800--51584909	30	3.7	30	78	4	116	37	5	21	35	1.77
51592344--51592424	17	4.6	17	72	20	69	55	2	3	38	1.31
51592631--51592688	30	1.9	30	85	0	80	46	0	32	20	1.51
51593378--51593414	9	4.1	9	92	0	65	45	13	10	29	1.77
51598948--51599683	372	2.0	372	95	0	1330	32	17	23	25	1.97
51600093--51600121	12	2.4	12	100	0	58	24	6	24	44	1.77
51602399--51602549	79	1.9	79	84	0	203	44	16	9	29	1.80
51608291--51608340	21	2.4	21	89	0	82	20	34	24	22	1.97
51609832--51609882	13	3.9	13	84	0	75	29	7	27	35	1.85
51621282--51621342	30	2.0	30	93	0	104	21	21	18	39	1.93
51622570--51622624	21	2.6	21	88	0	83	21	7	40	30	1.81
51622887--51622938	22	2.3	22	77	9	52	50	5	1	42	1.37
51632049--51632099	21	2.4	22	74	9	52	39	1	3	54	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51632499--51632567	26	2.7	26	88	2	104	40	2	0	56	1.14
51633763--51633800	4	9.5	4	100	0	76	0	23	0	76	0.79
51642292--51642412	25	5.3	21	66	29	54	49	4	2	43	1.35
51642837--51642906	29	2.3	29	85	4	86	22	12	15	48	1.79
51643191--51643227	19	1.9	20	88	5	58	0	27	2	70	1.01
51644349--51644377	15	1.9	15	100	0	58	48	13	6	31	1.69
51647862--51647898	19	1.9	19	89	10	58	32	10	0	56	1.34
51649483--51649520	20	1.9	20	84	10	51	60	0	5	34	1.19
51649896--51649930	14	2.5	14	86	13	54	40	2	5	51	1.40
51650661--51650725	4	16.2	4	93	0	94	21	0	27	50	1.49
51651269--51651362	44	2.2	43	83	9	113	42	0	3	54	1.16
51652681--51652970	97	3.0	96	86	5	365	41	2	16	40	1.60
51652686--51653020	97	3.4	95	82	6	359	40	2	17	40	1.61
51653019--51653310	126	2.3	126	86	1	415	33	16	20	29	1.95
51654454--51654496	18	2.4	18	88	0	59	44	9	27	18	1.80
51655102--51655126	7	3.6	7	100	0	50	60	12	0	28	1.32
51655681--51655721	19	2.2	19	86	8	57	65	7	19	7	1.41
51656200--51656260	21	3.0	20	80	7	77	14	22	26	36	1.93
51658311--51658341	13	2.4	13	94	0	53	67	0	0	32	0.91
51658379--51658408	11	2.7	11	100	0	60	50	0	20	30	1.49
51658375--51658417	11	3.9	11	90	0	59	46	0	23	30	1.52
51659447--51659494	5	9.8	5	78	13	55	64	0	2	33	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51659447--51659493	10	4.8	10	82	12	62	65	0	2	31	1.04
51659447--51659493	18	2.4	20	89	10	71	65	0	2	31	1.04
51659996--51660047	24	2.2	24	92	0	86	34	1	7	55	1.39
51669631--51669680	10	4.8	10	79	18	57	76	8	0	16	1.02
51669631--51669680	19	2.4	19	83	12	55	76	8	0	16	1.02
51669780--51670587	151	5.3	151	85	6	1074	29	9	8	52	1.63
51669795--51670596	307	2.6	303	90	4	1238	30	9	8	51	1.63
51670834--51670873	19	2.1	19	85	0	53	15	0	7	77	0.98
51682504--51682648	40	3.6	39	79	8	141	31	24	22	21	1.98
51682676--51682757	40	2.0	40	92	0	137	29	21	23	25	1.99
51682780--51682824	21	2.1	21	83	4	54	31	0	26	42	1.56
51682860--51682886	7	3.9	7	100	0	54	40	0	44	14	1.46
51682986--51683012	14	1.9	14	100	0	54	25	0	29	44	1.54
51683039--51683087	14	3.4	14	82	2	62	20	0	30	48	1.50
51683034--51683087	7	7.6	7	77	4	54	22	0	27	50	1.50
51683082--51683117	14	2.5	15	95	4	65	19	0	44	36	1.51
51683075--51683114	21	1.9	21	84	0	53	15	0	45	40	1.46
51683681--51683803	40	3.1	40	80	6	133	31	21	23	23	1.98
51683714--51683792	41	1.9	42	89	2	124	34	18	22	24	1.97
51684313--51684359	11	4.2	11	91	2	76	21	34	0	44	1.52
51684313--51684388	22	3.4	23	80	14	88	25	30	0	44	1.54
51684312--51684386	33	2.2	33	81	9	89	24	30	0	45	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51684312--51684388	11	6.9	11	71	21	54	24	29	0	45	1.54
51684442--51684481	10	3.9	10	80	6	53	37	0	0	62	0.95
51685578--51685610	7	4.7	7	100	0	66	27	0	15	57	1.38
51686259--51686297	18	2.2	18	95	0	69	23	30	7	38	1.83
51689949--51690326	125	3.0	125	94	0	648	30	24	16	28	1.97
51693347--51693404	9	6.4	9	91	0	89	41	22	10	25	1.85
51694128--51694194	23	2.9	23	88	4	91	35	8	23	31	1.86
51694933--51695045	43	2.6	42	83	5	136	25	16	26	30	1.97
51697182--51697215	18	1.9	17	88	5	50	44	0	0	55	0.99
51697975--51698040	34	1.9	34	100	0	132	53	6	19	21	1.67
51698244--51698385	58	2.4	59	86	9	200	40	17	19	22	1.92
51698498--51698543	23	2.0	23	100	0	92	30	13	26	30	1.93
51703012--51703055	17	2.5	17	85	7	52	50	13	2	34	1.55
51718050--51718091	19	2.2	20	82	4	50	50	0	2	47	1.14
51718548--51718673	36	3.5	35	68	15	96	15	22	15	46	1.84
51718549--51718732	73	2.5	73	86	3	246	16	21	17	44	1.87
51718616--51718742	37	3.5	36	68	11	96	17	22	17	43	1.88
51719661--51719685	6	4.2	6	100	0	50	80	0	0	20	0.72
51730395--51730430	18	2.0	18	88	0	54	16	5	0	77	0.94
51733397--51733439	21	1.9	24	86	13	65	41	6	4	46	1.51
51740570--51740629	28	2.2	27	79	8	68	40	10	6	43	1.64
51741134--51741178	23	1.9	24	86	4	65	17	37	22	22	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51742708--51742823	3	38.7	3	78	0	106	32	5	6	55	1.49
51743309--51743452	71	2.0	71	93	0	243	29	18	17	35	1.93
51744318--51744356	18	2.1	18	90	4	60	46	10	5	38	1.60
51746691--51746742	25	2.1	25	85	7	70	0	23	3	73	1.00
51750006--51750131	61	2.1	58	81	12	157	42	6	2	49	1.41
51751908--51751950	20	2.2	20	83	8	52	27	32	16	23	1.96
51754016--51754048	13	2.6	13	90	4	50	24	3	0	72	0.98
51756168--51756192	13	1.9	13	100	0	50	40	8	20	32	1.81
51756816--51756888	33	2.2	32	83	9	85	53	1	5	39	1.33
51757224--51757302	9	8.1	9	70	19	52	65	1	2	30	1.13
51757245--51757302	18	3.1	19	83	11	59	68	1	3	25	1.14
51758600--51758647	3	16.0	3	100	0	96	33	33	0	33	1.58
51762881--51762928	18	2.6	18	77	9	53	45	16	18	18	1.85
51762906--51763055	45	3.3	45	91	1	239	41	21	18	18	1.91
51764833--51764892	24	2.5	23	84	15	77	50	0	0	50	1.00
51768182--51768271	46	2.0	46	87	8	132	40	24	3	32	1.72
51768259--51768300	16	2.6	16	88	0	57	28	30	4	35	1.78
51771748--51772076	166	2.0	166	92	0	541	42	17	8	31	1.79
51775145--51775224	32	2.4	32	82	14	92	56	1	6	36	1.33
51775145--51775225	30	2.6	30	79	16	85	55	1	6	37	1.33
51775634--51775692	19	2.9	21	77	12	68	66	1	1	30	1.12
51775653--51775702	19	2.6	19	78	9	57	70	2	2	26	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51777394--51777451	28	2.1	27	81	9	64	29	3	3	63	1.27
51793470--51793575	42	2.5	42	87	0	158	50	14	12	23	1.76
51793476--51793544	22	3.2	22	79	8	88	49	10	14	26	1.75
51793488--51793554	20	3.2	21	81	8	82	49	13	13	23	1.77
51799338--51799379	10	4.2	10	82	8	50	80	0	19	0	0.70
51803275--51803522	85	2.9	86	90	3	376	35	23	19	21	1.96
51803275--51803522	43	5.8	43	90	1	383	35	23	19	21	1.96
51803929--51803974	21	2.2	21	92	7	76	0	47	19	32	1.50
51809455--51809539	9	9.9	9	80	8	79	29	2	23	44	1.66
51809444--51809531	43	2.0	43	84	0	113	30	3	22	43	1.70

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199