genome.fa.s20.2.7.7.80.10.50.1000.160.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Length:  58101237

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  160  of  199  ( 23844 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46853551--46853593	23	1.9	22	81	13	52	30	4	6	58	1.45
46855817--46855854	9	4.1	10	90	10	55	36	0	0	63	0.95
46855821--46855855	3	11.3	3	93	6	61	34	0	0	65	0.93
46856357--46856751	110	3.6	110	91	2	591	30	15	18	35	1.92
46858768--46858792	10	2.5	10	100	0	50	20	16	8	56	1.65
46863575--46863616	21	2.0	22	85	4	59	57	4	0	38	1.20
46868951--46868984	7	5.0	7	89	7	52	47	0	0	52	1.00
46870088--46870186	10	10.0	10	70	22	59	47	0	2	50	1.12
46870090--46870147	19	2.9	19	82	12	64	46	0	0	53	1.00
46870222--46870248	14	1.9	14	100	0	54	48	0	0	51	1.00
46872677--46872775	10	10.0	10	70	22	59	47	0	2	50	1.12
46872679--46872736	19	2.9	19	82	12	64	46	0	0	53	1.00
46872811--46872837	14	1.9	14	100	0	54	48	0	0	51	1.00
46886286--46886321	9	3.9	9	92	3	54	77	5	0	16	0.94
46892106--46892139	3	11.3	3	100	0	68	0	32	0	67	0.91
46893510--46893536	12	2.2	12	100	0	54	14	14	0	70	1.17
46897187--46897241	25	2.1	25	87	12	76	67	3	0	29	1.08
46898946--46899130	44	4.2	44	65	18	123	26	24	20	28	1.99
46898855--46899526	132	5.1	132	92	0	1065	25	23	20	30	1.99
46899226--46899432	44	4.7	44	66	12	111	24	24	19	31	1.98
46911566--46911620	25	2.1	25	87	12	76	67	3	0	29	1.08
46917364--46917509	42	3.5	42	81	6	161	34	24	17	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46917490--46917564	26	2.9	26	91	0	123	26	36	20	17	1.94
46917541--46917729	41	4.6	41	89	0	279	26	23	18	31	1.97
46918059--46918119	30	2.1	29	81	9	70	34	22	4	37	1.76
46933239--46933285	19	2.5	20	86	6	62	42	10	21	25	1.85
46935241--46935323	26	3.2	26	76	8	73	65	8	6	20	1.42
46936335--46936374	20	2.0	21	85	5	55	10	22	17	50	1.76
46938878--46938941	21	2.9	21	73	15	58	43	3	6	46	1.44
46941094--46941194	29	3.5	29	89	1	150	26	14	28	29	1.95
46949027--46949127	29	3.5	29	87	1	141	27	14	27	29	1.96
46960122--46960171	24	2.1	24	81	7	57	20	24	10	46	1.81
46960190--46960252	33	1.9	33	83	6	83	23	15	7	52	1.69
46974477--46974683	44	4.5	44	71	13	164	30	17	19	31	1.96
46974619--46974836	44	4.7	44	69	13	150	29	20	22	27	1.99
46974475--46974841	143	2.6	142	85	1	466	31	18	20	28	1.97
46976445--46976484	15	2.7	15	85	11	55	30	10	0	60	1.30
46976445--46976485	16	2.6	16	88	7	57	29	12	0	58	1.34
46976600--46976646	22	2.1	22	88	4	67	17	2	4	76	1.04
46977969--46978005	16	2.3	16	86	13	58	40	0	0	59	0.97
46980874--46980922	23	2.1	23	92	7	82	51	16	4	28	1.63
46983126--46983155	11	2.7	11	94	0	51	50	6	20	23	1.71
46993448--46993694	50	4.8	50	81	6	239	22	27	21	28	1.99
46999856--46999988	50	2.7	49	80	4	151	22	29	21	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47003800--47004010	84	2.5	84	96	0	377	35	24	17	22	1.95
47003759--47004010	42	6.0	42	80	8	269	35	25	17	22	1.95
47004010--47004157	50	3.0	49	81	6	181	28	26	19	25	1.99
47006736--47006802	33	2.0	33	97	0	125	46	25	8	19	1.79
47014543--47014612	25	2.8	25	77	12	72	44	17	11	27	1.82
47018197--47018251	24	2.3	24	81	6	58	69	1	0	29	0.99
47020698--47020750	10	5.2	10	78	17	56	50	0	3	45	1.19
47020649--47020759	31	3.4	31	80	7	123	53	0	3	43	1.18
47020712--47020770	23	2.5	24	75	13	59	55	0	5	38	1.22
47031948--47031979	16	1.9	17	93	6	57	81	0	3	15	0.82
47037244--47037304	25	2.4	25	83	0	68	39	16	21	22	1.92
47038363--47038420	5	11.8	5	98	1	109	41	0	0	58	0.98
47039408--47039522	22	5.1	22	72	8	88	16	23	19	40	1.90
47039397--47039522	47	2.7	47	87	6	179	16	23	19	41	1.90
47041502--47041555	16	3.0	19	73	15	60	46	18	0	35	1.50
47043265--47043303	18	2.2	18	90	0	60	61	7	7	23	1.49
47043396--47043442	17	2.8	17	90	3	69	42	6	0	51	1.27
47043405--47043449	17	2.6	17	89	3	54	42	8	0	48	1.34
47047412--47047535	30	4.1	30	93	1	203	25	24	6	43	1.78
47047422--47047529	15	7.2	15	67	12	78	25	22	7	44	1.79
47052104--47052197	30	3.1	30	90	1	143	25	24	6	43	1.78
47052114--47052191	15	5.2	15	67	11	61	25	21	7	44	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47052912--47052967	27	2.1	27	89	0	85	7	51	23	17	1.70
47056718--47056742	12	2.1	12	100	0	50	48	0	0	52	1.00
47058885--47058947	31	2.0	31	100	0	126	30	12	19	38	1.89
47060282--47060331	10	4.8	10	86	13	66	68	0	0	32	0.90
47060298--47060333	12	2.8	13	87	8	56	63	0	0	36	0.94
47060282--47060331	22	2.4	22	87	12	70	68	0	0	32	0.90
47060455--47060489	7	5.0	7	100	0	70	71	0	0	28	0.86
47062030--47062091	3	20.3	3	75	15	56	29	6	3	61	1.37
47062129--47062164	16	2.2	17	95	5	65	50	0	0	50	1.00
47062197--47062256	26	2.3	26	85	5	77	31	3	1	63	1.20
47064306--47064344	8	4.6	8	93	6	60	76	0	12	10	1.01
47064315--47064351	16	2.3	16	85	0	56	78	0	10	10	0.97
47065545--47065638	45	2.1	45	82	4	109	31	23	19	25	1.98
47065815--47066515	44	16.0	44	71	9	375	31	19	20	28	1.97
47065987--47066497	88	5.9	88	80	4	579	30	20	20	27	1.98
47065985--47066506	263	2.0	263	92	0	875	31	20	20	27	1.98
47065769--47066517	392	1.9	392	84	4	1001	31	19	20	28	1.97
47068988--47069449	47	9.7	47	91	2	712	32	8	29	29	1.86
47068988--47069449	96	4.9	96	94	1	738	32	8	29	29	1.86
47068988--47069449	143	3.2	141	90	3	712	32	8	29	29	1.86
47071434--47071915	166	3.0	160	87	5	646	25	22	26	25	2.00
47071434--47071915	40	11.9	40	88	4	612	25	22	26	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47072795--47072822	4	7.0	4	100	0	56	25	0	0	75	0.81
47075165--47075203	18	2.2	18	85	0	51	61	2	23	12	1.43
47076598--47076625	4	7.0	4	100	0	56	25	0	0	75	0.81
47080206--47080667	47	9.7	47	90	2	694	32	8	29	29	1.86
47080206--47080667	96	4.9	96	92	1	720	32	8	29	29	1.86
47082225--47082779	44	12.8	44	69	9	289	30	20	20	27	1.98
47082267--47082559	129	2.3	129	92	0	487	30	20	20	28	1.98
47082396--47082729	175	1.9	175	93	1	580	30	20	20	28	1.97
47082442--47082726	85	3.3	84	73	10	286	30	20	20	29	1.97
47082570--47082858	129	2.2	129	91	0	452	30	20	21	28	1.98
47082263--47082882	304	2.0	304	92	0	1024	30	20	20	28	1.98
47084413--47084473	22	3.0	20	77	13	63	34	1	3	60	1.23
47084426--47084483	26	2.3	25	80	11	64	31	3	1	63	1.21
47091242--47091271	12	2.5	12	94	0	51	86	3	10	0	0.67
47111898--47111940	5	8.4	5	97	2	77	79	0	0	20	0.74
47112703--47112737	18	2.0	17	94	5	61	45	2	0	51	1.16
47112705--47112746	21	2.0	21	86	9	59	47	2	0	50	1.14
47118103--47118145	17	2.5	18	74	11	54	18	11	0	69	1.17
47118373--47118403	7	4.4	7	100	0	62	0	41	12	45	1.42
47121793--47121831	20	2.0	20	85	10	53	33	0	20	46	1.51
47122046--47122094	3	16.7	3	78	16	50	65	2	0	32	1.04
47123536--47123869	127	2.6	127	89	2	510	24	21	22	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47123629--47123819	44	4.5	44	70	12	137	27	21	21	29	1.99
47123985--47124836	87	9.8	87	90	0	1272	25	23	22	29	1.99
47129624--47129675	19	2.7	20	82	5	63	46	11	17	25	1.81
47131894--47131957	3	21.7	3	83	12	80	65	1	0	32	1.02
47136920--47136948	14	2.1	14	100	0	58	37	20	34	6	1.80
47138579--47138642	33	1.9	33	96	0	119	31	1	23	43	1.63
47138584--47138641	18	3.4	18	66	22	52	31	1	22	44	1.63
47141796--47142131	72	4.7	72	88	3	466	54	15	6	24	1.64
47144799--47144852	22	2.5	22	81	0	63	50	5	24	20	1.69
47148024--47148120	23	4.2	22	84	7	97	49	29	11	9	1.70

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199