genome.fa.s20.2.7.7.80.10.50.1000.33.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Length:  58101237

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  33  of  199  ( 23844 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10412573--10412597	7	3.6	7	100	0	50	44	32	0	24	1.54
10412580--10412618	21	1.9	20	89	5	60	43	35	0	20	1.52
10412678--10413235	115	4.9	114	72	10	399	27	22	19	30	1.98
10412684--10413101	229	1.8	228	81	6	513	27	21	19	31	1.98
10417528--10417557	4	7.5	4	100	0	60	26	0	23	50	1.50
10425266--10425290	13	1.9	13	100	0	50	40	20	8	32	1.81
10426766--10426823	25	2.4	24	79	2	62	58	6	1	32	1.35
10427899--10427932	16	2.1	16	88	0	50	38	0	5	55	1.24
10427943--10427970	14	2.0	14	100	0	56	50	0	0	50	1.00
10429467--10429509	11	3.8	11	80	17	52	30	2	2	65	1.18
10429470--10429513	23	1.9	23	90	0	70	31	2	4	61	1.28
10432304--10432351	23	2.1	25	85	14	68	18	2	12	66	1.33
10433421--10433461	18	2.4	17	84	15	57	26	0	7	65	1.18
10441578--10441631	4	13.5	4	100	0	108	50	24	0	25	1.50
10441801--10441838	20	1.9	20	94	0	67	52	15	10	21	1.72
10447094--10447130	9	4.1	9	92	0	65	29	10	13	45	1.77
10447705--10447731	13	2.1	13	100	0	54	40	22	7	29	1.81
10448327--10448385	17	3.3	19	67	23	56	44	3	6	45	1.47
10448323--10448399	34	2.3	34	100	0	154	46	2	9	41	1.49
10450285--10451040	80	9.3	80	75	15	564	30	0	12	56	1.42
10450365--10450901	101	5.3	101	92	3	889	29	0	13	56	1.43
10450559--10450612	27	2.0	27	96	0	99	29	1	14	53	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10450260--10451200	19	46.3	19	67	24	300	29	0	14	55	1.44
10450378--10450974	208	3.0	207	87	7	895	29	0	13	56	1.42
10450261--10450633	181	2.1	178	86	6	525	30	0	12	56	1.42
10451031--10451056	8	3.2	8	100	0	52	26	0	11	61	1.30
10451051--10451199	23	6.8	23	83	11	206	28	0	19	52	1.46
10451051--10451199	42	3.4	46	86	9	206	28	0	19	52	1.46
10451051--10451199	65	2.3	65	100	0	298	28	0	19	52	1.46
10451193--10451314	60	2.0	60	89	6	185	31	0	12	55	1.37
10451431--10451467	16	2.4	16	90	4	58	32	2	5	59	1.34
10459690--10459737	22	2.2	22	85	10	64	68	8	12	10	1.39
10460693--10460722	3	10.0	3	92	0	51	33	3	0	63	1.11
10460710--10460758	26	1.9	25	83	4	62	22	2	2	73	1.04
10465094--10465126	17	1.9	17	93	0	57	12	27	21	39	1.88
10471698--10471727	3	10.0	3	100	0	60	66	0	0	33	0.92
10472629--10472760	59	2.2	59	82	2	149	27	15	10	46	1.78
10475714--10475753	14	2.9	14	84	0	53	40	7	10	42	1.67
10475730--10476793	529	2.0	531	99	0	2105	38	10	14	36	1.80
10477304--10477371	31	2.2	31	86	5	93	45	7	8	38	1.63
10481468--10481576	53	2.1	53	86	3	150	7	24	10	57	1.57
10481485--10481591	53	2.0	54	98	1	207	5	20	14	58	1.56
10484067--10484218	77	2.0	77	98	0	295	42	8	8	40	1.66
10484257--10484283	11	2.5	11	100	0	54	29	18	25	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10485970--10486032	33	2.0	31	81	6	72	26	14	17	41	1.88
10503774--10503841	26	2.6	26	90	0	82	45	0	17	36	1.49
10503794--10503841	15	3.5	15	67	21	50	47	0	14	37	1.44
10504027--10504071	24	1.9	24	90	4	74	57	4	6	31	1.44
10507414--10507439	7	3.7	7	100	0	52	57	0	0	42	0.98
10510066--10510263	105	1.9	105	97	0	378	30	18	19	31	1.96
10510724--10510829	37	2.8	38	77	16	105	50	0	13	35	1.41
10511120--10511176	22	2.6	23	78	18	75	64	3	7	24	1.34
10511881--10511905	13	1.9	13	100	0	50	68	0	8	24	1.16
10512665--10513405	132	5.6	132	84	3	1019	29	26	16	27	1.97
10512652--10513375	88	8.3	88	85	2	836	28	26	16	28	1.97
10525417--10525515	38	2.6	38	78	13	107	50	0	13	36	1.41
10525800--10525857	20	2.7	22	79	17	68	65	3	5	25	1.29
10525801--10525868	21	3.1	21	78	18	68	63	2	7	26	1.35
10526567--10526591	13	1.9	13	100	0	50	68	0	8	24	1.16
10529525--10529554	15	1.9	16	93	6	53	73	13	0	13	1.10
10534554--10534617	32	2.0	32	100	0	128	37	15	6	40	1.73
10535965--10535999	14	2.4	14	95	4	61	42	11	17	28	1.83
10545838--10545866	3	9.7	3	100	0	58	31	0	0	68	0.89
10545867--10546052	73	2.5	73	99	0	363	27	6	24	40	1.80
10550268--10550293	3	8.7	3	100	0	52	30	0	0	69	0.89
10550294--10550479	73	2.5	73	99	0	363	27	6	24	40	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10555007--10555054	19	2.7	17	75	9	51	22	8	0	68	1.16
10555130--10555188	3	19.7	3	75	13	50	28	5	3	62	1.32
10555669--10556016	123	2.8	123	95	0	635	29	16	21	32	1.95
10559132--10559156	10	2.5	10	100	0	50	48	0	8	44	1.32
10559140--10559267	55	2.3	55	94	4	222	46	4	10	38	1.60
10559261--10559442	29	6.3	29	93	0	301	31	0	23	44	1.54
10559519--10559629	25	4.6	25	68	20	83	45	14	2	36	1.59
10559448--10559631	71	2.6	71	92	1	298	44	15	3	36	1.64
10561816--10561879	29	2.2	30	91	8	105	65	0	0	34	0.93
10561903--10561986	29	3.1	29	62	22	74	41	0	28	29	1.56
10561880--10561994	51	2.3	51	96	0	212	41	0	30	27	1.56
10562364--10562397	17	2.0	17	88	0	50	38	0	8	52	1.33
10567167--10567292	44	2.9	44	78	4	121	32	19	19	28	1.96
10568882--10568926	21	2.1	22	84	12	58	13	2	6	77	1.05
10571489--10571537	22	2.3	21	76	10	55	48	4	14	32	1.62
10576187--10576222	13	2.6	14	86	8	56	69	25	0	5	1.10
10580708--10580733	12	2.2	12	100	0	52	50	7	0	42	1.31
10580711--10580738	14	2.0	14	100	0	56	50	7	0	42	1.30
10598784--10598821	20	1.9	20	84	10	51	42	7	5	44	1.56
10604209--10604261	22	2.4	22	93	0	88	30	52	3	13	1.57
10604535--10604588	26	2.1	25	86	10	74	9	5	3	81	0.97
10604534--10604576	19	2.2	19	83	4	50	9	4	4	81	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10604530--10604588	13	4.5	13	72	16	50	8	6	3	81	0.97
10604530--10604584	20	2.7	19	75	10	56	9	5	3	81	0.95
10605499--10605580	3	26.3	3	82	7	101	30	6	2	60	1.33
10605536--10605611	18	4.2	17	85	8	62	28	6	2	61	1.34
10605582--10605633	20	2.7	19	82	11	54	23	13	3	59	1.50
10605906--10605977	25	3.0	24	73	15	67	31	5	1	61	1.28
10605930--10605960	15	2.1	15	100	0	62	32	6	0	61	1.21
10605934--10605973	21	1.9	21	84	0	53	37	5	0	57	1.21
10606046--10606083	15	2.5	15	86	0	58	34	5	0	60	1.19
10616779--10616830	24	2.2	24	85	0	68	38	3	7	50	1.50
10619363--10619396	17	1.9	18	88	5	52	58	20	2	17	1.51
10619770--10619851	26	3.2	26	75	14	66	62	4	3	29	1.33
10623168--10623201	12	2.8	12	81	0	50	44	20	23	11	1.84
10625484--10625544	5	12.8	5	80	16	76	81	0	18	0	0.68
10625483--10625546	19	3.3	19	81	18	87	81	0	18	0	0.70
10625489--10625545	29	2.0	27	78	18	55	82	0	17	0	0.67
10625484--10625543	24	2.6	23	82	15	70	81	0	18	0	0.69
10625808--10626129	105	3.0	106	83	5	402	26	17	8	48	1.75
10626597--10626654	24	2.4	24	91	0	89	31	12	24	32	1.91
10627007--10627265	89	2.9	89	81	2	243	32	22	20	23	1.98
10627406--10627615	87	2.4	87	83	4	208	28	21	23	25	1.99
10627471--10627610	44	3.2	44	69	2	129	25	22	25	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10627453--10627642	87	2.2	86	88	3	281	30	22	24	23	1.99
10627481--10627704	87	2.6	87	83	3	218	28	21	25	24	1.99
10627933--10628045	45	2.5	45	81	1	129	26	17	27	28	1.98
10630293--10630359	30	2.2	30	84	5	82	40	8	5	44	1.60
10631317--10631390	29	2.5	31	88	4	107	21	13	16	48	1.80
10634600--10634665	26	2.5	26	72	13	64	33	9	21	36	1.85
10638442--10638476	16	2.2	16	94	0	61	54	5	2	37	1.39
10639375--10639444	21	3.4	21	86	4	97	5	48	14	31	1.67
10643663--10643702	21	2.0	20	90	5	62	22	2	0	75	0.93
10643759--10644052	105	2.8	106	87	5	411	26	12	12	48	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199