genome.fa.s20.2.7.7.80.10.50.1000.122.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Length:  58101237

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  122  of  199  ( 23844 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34870551--34870882	112	3.0	109	88	5	463	59	13	1	25	1.43
34870777--34871025	101	2.5	98	85	5	333	60	14	0	25	1.37
34870451--34871075	208	3.0	207	72	15	526	59	14	0	24	1.41
34871471--34871520	24	2.1	24	82	10	59	68	4	0	28	1.08
34875322--34875387	22	3.0	22	93	6	109	24	0	31	43	1.54
34875920--34875959	18	2.3	17	83	8	53	45	7	30	17	1.76
34879573--34879817	122	2.0	122	95	0	445	31	10	19	38	1.86
34904500--34904662	68	2.4	68	82	4	177	22	19	19	39	1.93
34910364--34910540	27	6.5	27	83	3	203	27	15	27	29	1.96
34910365--34910520	82	1.9	81	88	3	233	26	15	28	29	1.96
34910361--34910540	82	2.2	81	83	3	227	27	15	27	30	1.96
34912448--34912478	16	1.9	16	93	0	53	9	6	6	77	1.12
34914161--34914223	20	3.0	20	76	17	65	46	1	3	49	1.27
34914754--34914905	38	4.0	38	83	0	187	27	23	19	28	1.98
34914723--34914905	76	2.4	75	82	2	217	27	23	19	29	1.98
34915968--34916024	16	3.2	17	76	13	62	43	0	0	56	0.99
34915962--34916036	22	3.3	22	71	14	62	46	0	0	53	1.00
34915986--34916033	25	1.9	25	82	0	60	47	0	0	52	1.00
34922512--34922546	15	2.3	15	90	0	52	80	0	0	20	0.72
34923282--34923327	21	2.2	21	84	0	56	67	8	10	13	1.42
34931374--34931402	12	2.3	13	94	5	51	20	6	6	65	1.40
34936050--34936808	379	2.0	379	94	0	1329	33	11	17	37	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34937390--34937432	17	2.5	17	80	0	50	44	6	4	44	1.52
34939350--34939376	12	2.2	12	100	0	54	51	7	0	40	1.30
34939855--34940030	27	6.5	27	82	3	192	26	14	27	30	1.95
34939856--34940011	82	1.9	81	88	3	233	26	15	28	29	1.96
34939855--34940009	55	2.9	54	83	3	195	27	15	27	29	1.96
34961054--34961407	33	10.4	33	65	26	152	17	20	29	32	1.96
34961050--34961407	103	3.5	103	94	0	619	18	20	29	31	1.96
34962954--34963309	42	8.4	42	83	7	366	30	19	23	27	1.98
34963748--34963783	12	3.0	12	87	0	54	2	36	16	44	1.63
34975223--34975266	11	3.7	11	77	16	52	11	13	11	63	1.52
34975222--34975267	25	1.9	23	91	8	74	15	13	10	60	1.58
34981858--34982051	40	4.8	40	84	2	228	33	18	30	18	1.94
34981922--34982023	20	5.1	20	69	9	73	27	18	34	19	1.95
34982399--34982437	19	2.2	18	86	9	53	35	7	5	51	1.53
34984799--34985758	477	2.0	475	95	0	1740	38	15	19	26	1.92
34988933--34988990	30	1.9	30	92	0	98	20	6	27	44	1.77
35002699--35002752	25	2.2	25	89	0	81	35	20	20	24	1.96
35002734--35002788	25	2.2	24	83	3	65	32	21	21	23	1.98
35010283--35010345	25	2.5	25	82	5	74	36	22	17	23	1.95
35010326--35010383	25	2.3	25	78	0	71	36	18	25	18	1.95
35016480--35016558	29	2.7	29	71	9	79	31	11	16	40	1.84
35046378--35046407	16	1.9	16	93	6	53	50	20	0	30	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35052598--35052627	16	1.9	16	93	6	53	50	20	0	30	1.49
35053770--35053840	25	2.8	25	82	8	81	28	21	25	25	1.99
35061469--35061521	5	10.8	5	91	4	90	0	39	0	60	0.97
35061472--35061529	8	7.2	8	73	26	52	1	39	0	58	1.08
35061989--35062018	15	2.1	15	93	6	53	53	6	0	40	1.27
35064697--35064746	24	2.0	24	88	3	73	74	6	8	12	1.22
35065761--35065809	9	5.7	9	90	7	75	36	6	0	57	1.24
35066192--35066229	20	1.9	20	89	10	60	28	13	0	57	1.36
35066263--35066575	106	2.9	109	85	4	399	29	15	17	37	1.91
35066767--35066811	22	2.0	22	83	8	56	46	11	4	37	1.60
35067125--35067162	20	1.9	20	88	0	58	34	7	10	47	1.67
35083354--35083378	3	8.3	3	100	0	50	32	0	68	0	0.90
35088137--35088244	56	1.9	55	94	1	189	37	9	12	39	1.76
35093212--35093285	25	2.9	26	84	7	91	29	18	27	24	1.98
35093326--35093465	25	5.6	25	72	22	116	33	20	26	20	1.96
35093227--35093455	74	3.1	74	80	8	234	33	19	25	21	1.97
35093301--35093491	74	2.6	75	82	9	232	35	19	25	19	1.96
35093312--35093480	25	6.8	25	71	22	108	34	20	26	18	1.96
35093238--35093488	25	10.2	25	71	10	88	34	18	26	19	1.95
35093612--35093636	8	3.1	8	100	0	50	28	0	12	60	1.32
35096028--35096134	55	1.9	55	94	3	189	37	9	13	40	1.76
35109892--35109917	1	26.0	1	100	0	52	0	0	0	100	0.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35111382--35111489	56	1.9	55	94	1	189	37	9	12	39	1.76
35116463--35116536	25	2.9	26	84	7	91	29	18	27	24	1.98
35116577--35116716	25	5.6	25	72	22	116	33	20	26	20	1.96
35116478--35116706	74	3.1	74	80	8	234	33	19	25	21	1.97
35116552--35116742	74	2.6	75	82	9	232	35	19	25	19	1.96
35116563--35116731	25	6.8	25	71	22	108	34	20	26	18	1.96
35116489--35116739	25	10.2	25	71	10	88	34	18	26	19	1.95
35116863--35116887	8	3.1	8	100	0	50	28	0	12	60	1.32
35119297--35119403	55	1.9	55	94	3	189	37	9	13	40	1.76
35125790--35125848	2	29.5	2	100	0	118	50	0	49	0	1.00
35129977--35130158	50	3.7	50	83	1	206	26	22	29	21	1.99
35130425--35130473	20	2.5	20	81	15	66	57	6	24	12	1.58
35134287--35134391	20	5.2	20	73	11	72	34	20	28	16	1.94
35141917--35141964	20	2.4	20	92	0	87	31	22	27	18	1.97
35141973--35142086	60	1.9	60	81	0	138	48	18	23	9	1.77
35141973--35142086	20	5.7	20	81	2	122	48	18	23	9	1.77
35141978--35142079	40	2.6	40	87	1	143	48	16	25	9	1.77
35143672--35143895	40	5.7	40	86	6	262	25	27	20	25	1.99
35143672--35143895	118	1.9	120	83	9	298	25	27	20	25	1.99
35144460--35144503	22	2.0	21	83	12	54	40	15	4	38	1.68
35146189--35146236	23	2.0	24	84	4	62	29	2	12	56	1.48
35147642--35147671	12	2.5	12	94	0	51	30	40	23	6	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35152448--35152506	27	2.2	26	84	3	73	37	22	22	18	1.94
35153999--35154050	20	2.6	20	84	0	77	42	21	25	11	1.86
35158211--35158243	17	2.0	17	88	5	50	63	12	6	18	1.48
35161236--35161389	20	7.8	20	78	3	159	42	13	27	16	1.86
35161241--35161389	39	3.8	39	81	7	176	41	13	28	16	1.86
35161236--35161401	59	2.8	58	83	2	197	42	13	26	16	1.86
35162758--35162791	6	5.7	6	96	0	50	52	23	0	23	1.47
35173641--35174081	27	16.4	27	87	4	597	44	19	19	17	1.87
35174456--35174526	33	2.1	34	81	2	81	23	23	22	29	1.99
35178325--35178383	27	2.2	27	84	6	75	28	30	10	30	1.90
35190445--35190469	5	5.0	5	100	0	50	60	20	0	20	1.37
35196810--35196872	24	2.6	24	87	5	83	17	26	20	34	1.95
35196835--35196905	25	2.9	24	85	6	88	21	25	18	35	1.95
35196810--35196912	25	4.2	25	83	5	84	21	27	19	32	1.97
35201522--35201587	29	2.3	26	80	16	78	31	4	4	59	1.38
35201902--35201935	3	11.7	3	87	6	52	73	0	26	0	0.83
35201900--35201943	12	3.8	12	85	8	65	77	0	22	0	0.77
35201905--35201943	9	4.6	9	84	9	55	76	0	23	0	0.78
35202708--35202741	3	11.3	3	100	0	68	32	32	0	35	1.58
35202888--35202956	30	2.3	30	80	7	77	21	10	21	46	1.81
35205974--35206015	3	14.0	3	100	0	84	66	0	0	33	0.92
35206014--35206044	3	10.3	3	100	0	62	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35234541--35234633	43	2.2	43	84	3	116	31	31	17	20	1.95
35241307--35241409	43	2.4	42	83	1	125	32	25	13	29	1.94
35243081--35243371	40	7.3	39	79	5	307	27	27	20	24	1.99
35243081--35243361	80	3.5	80	92	0	449	27	27	20	24	1.99
35251234--35251525	40	7.3	39	81	5	343	27	28	20	23	1.99
35251234--35251525	80	3.7	80	93	0	469	27	28	20	23	1.99
35253837--35254021	79	2.3	82	82	9	222	24	28	22	24	2.00
35253818--35254021	40	5.1	40	80	10	222	24	27	22	25	2.00
35256380--35256627	30	8.3	29	80	7	169	35	14	27	22	1.93
35256406--35256658	60	4.2	60	76	10	216	34	13	26	24	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199