genome.fa.s20.2.7.7.80.10.50.1000.83.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Length:  58101237

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  83  of  199  ( 23844 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23384732--23384848	62	1.9	61	86	5	166	51	3	5	40	1.41
23386701--23386741	21	2.0	21	85	9	57	48	0	4	46	1.23
23390154--23390207	16	3.8	14	79	11	56	22	1	0	75	0.89
23390162--23390207	14	3.5	13	85	8	58	21	2	0	76	0.90
23390154--23390240	36	2.5	35	81	9	97	24	2	1	72	1.03
23390155--23390237	28	2.9	27	79	12	78	24	2	1	72	1.04
23409415--23409499	17	5.1	17	81	1	91	32	5	16	44	1.72
23410542--23410575	15	2.3	15	89	0	50	73	2	2	20	1.09
23428541--23428875	97	3.4	99	76	7	311	31	21	15	31	1.94
23433514--23433598	22	3.7	22	74	13	82	11	17	0	70	1.16
23433514--23433601	47	2.0	45	84	8	117	13	17	0	69	1.19
23433632--23433656	7	3.6	7	100	0	50	12	16	0	72	1.13
23436151--23436188	18	2.1	18	90	0	58	13	39	13	34	1.83
23442351--23442402	24	2.2	24	85	0	68	53	9	3	32	1.51
23444175--23444221	24	2.0	24	82	0	58	59	29	4	6	1.41
23446408--23446598	94	2.0	94	96	0	355	33	6	19	40	1.77
23462604--23462632	14	2.0	15	93	6	51	51	20	0	27	1.47
23462723--23462781	3	19.7	3	100	0	118	0	33	0	66	0.92
23465529--23465554	7	3.7	7	100	0	52	46	0	0	53	1.00
23466056--23466090	18	1.9	18	88	0	52	22	2	5	68	1.24
23470163--23470203	21	2.0	21	95	0	73	34	7	9	48	1.64
23471218--23471265	21	2.4	21	80	16	57	0	22	2	75	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23479852--23480027	91	1.9	91	81	5	214	28	21	18	31	1.96
23481060--23481196	37	3.7	36	82	13	163	24	22	15	37	1.93
23483564--23483653	39	2.2	41	88	3	130	38	2	6	52	1.40
23488536--23488574	19	2.0	21	85	10	55	69	5	10	15	1.34
23488747--23488804	21	2.5	22	81	13	73	43	15	6	34	1.74
23488764--23488807	21	2.1	21	95	0	79	40	13	6	38	1.71
23489281--23489336	20	2.8	20	86	5	69	46	1	5	46	1.36
23489506--23489580	20	3.8	19	77	19	82	49	14	2	33	1.58
23489571--23489618	25	1.9	25	86	0	69	50	10	10	29	1.70
23491905--23491938	15	2.3	15	90	5	52	67	0	0	32	0.91
23492852--23492889	3	12.7	3	83	10	51	65	0	34	0	0.93
23492905--23492961	20	2.8	20	75	17	55	70	0	28	1	0.98
23492906--23492971	24	2.7	24	71	2	60	71	0	25	3	1.01
23493268--23493362	38	2.5	38	84	10	122	32	3	9	54	1.48
23496335--23497392	159	6.6	159	93	1	1775	28	9	8	53	1.64
23496335--23497392	317	3.3	317	93	1	1764	28	9	8	53	1.64
23497748--23497810	27	2.3	27	86	0	81	6	34	33	25	1.81
23498199--23498261	29	2.2	29	83	11	76	39	4	6	49	1.49
23499720--23499756	3	12.3	3	100	0	74	0	32	0	67	0.91
23503600--23503624	13	1.9	13	100	0	50	48	0	0	52	1.00
23503716--23503791	10	7.8	10	70	21	54	48	0	1	50	1.09
23503716--23503806	26	3.3	26	72	19	76	49	1	1	48	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23503709--23503785	37	2.1	37	82	4	93	50	0	1	48	1.09
23505107--23505175	16	4.3	16	92	0	120	37	7	33	21	1.81
23505157--23505249	44	2.1	46	91	4	154	30	4	30	35	1.77
23505157--23505262	39	2.5	44	83	11	132	31	3	31	33	1.76
23505409--23505461	18	3.0	17	91	5	79	56	1	1	39	1.21
23505500--23505700	26	7.1	26	73	19	163	53	1	1	42	1.21
23505507--23505569	18	4.3	15	69	25	53	58	0	1	39	1.07
23505443--23505809	146	2.5	146	96	1	675	52	2	2	42	1.29
23505599--23505643	22	2.1	21	83	4	54	55	6	0	37	1.26
23505627--23505666	16	2.5	17	76	15	50	52	0	0	47	1.00
23505653--23505715	18	4.3	15	69	25	53	58	0	1	39	1.07
23505681--23505719	18	2.2	18	90	0	60	56	0	2	41	1.13
23505745--23505788	21	2.1	21	83	8	54	56	6	0	36	1.26
23509117--23509141	2	12.5	2	100	0	50	52	0	0	48	1.00
23509682--23509734	27	2.1	27	82	10	67	43	0	0	56	0.99
23512327--23512353	13	2.1	13	100	0	54	37	18	14	29	1.91
23517887--23517919	8	4.2	8	92	7	50	81	0	6	12	0.85
23517890--23517921	15	2.1	15	94	0	55	84	0	3	12	0.74
23522647--23522713	24	2.8	24	73	10	64	37	0	1	61	1.05
23522714--23522773	19	3.0	20	83	9	70	43	1	1	53	1.20
23532911--23533026	43	2.7	43	74	5	119	25	18	26	28	1.98
23546171--23546215	21	2.1	22	87	4	65	53	0	4	42	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23546183--23546216	16	2.1	16	89	10	52	52	0	0	47	1.00
23549040--23549072	15	2.1	16	88	5	50	54	3	12	30	1.52
23549245--23549312	27	2.6	25	77	9	64	41	1	4	52	1.30
23558234--23558292	31	1.9	31	86	6	84	32	13	11	42	1.81
23559820--23559902	21	4.0	21	83	0	85	13	22	19	44	1.85
23563891--23563962	34	2.1	34	84	0	90	51	2	9	36	1.49
23565650--23566439	44	18.2	44	76	8	611	23	23	22	30	1.99
23565778--23566439	131	5.1	131	89	2	847	24	24	21	29	1.99
23565777--23566327	175	3.2	175	88	3	715	24	24	22	29	1.99
23565650--23566418	175	4.4	176	81	7	663	23	23	22	30	1.99
23576719--23576790	34	2.1	34	84	0	90	51	2	9	36	1.49
23583603--23583648	22	2.1	22	88	8	67	19	0	0	80	0.71
23583608--23583643	16	2.2	17	90	5	56	19	0	0	80	0.71
23583613--23583669	22	2.6	22	81	10	64	21	3	0	75	0.95
23583690--23583723	17	1.9	18	88	5	52	20	5	0	73	1.04
23583821--23583872	25	2.0	25	85	7	68	30	3	0	65	1.10
23586485--23586523	19	2.1	19	85	9	53	51	12	2	33	1.54
23586858--23587051	60	3.2	59	86	2	192	36	20	20	22	1.95
23586954--23586998	20	2.2	20	84	0	54	40	20	22	17	1.92
23586971--23587051	20	4.1	20	72	12	76	39	20	19	19	1.93
23586907--23587077	60	2.8	60	89	1	236	36	20	21	21	1.95
23592283--23592357	37	2.0	39	84	5	100	40	1	2	56	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23596742--23596782	21	2.0	21	90	0	64	29	21	29	19	1.98
23600168--23600209	17	2.3	18	80	12	50	33	0	9	57	1.31
23607492--23607543	28	2.0	25	82	17	63	11	7	7	73	1.26
23620790--23620990	100	2.0	100	83	0	249	30	19	21	27	1.98
23623149--23623279	70	1.9	70	90	3	210	30	20	19	29	1.97
23624403--23624462	9	6.1	10	79	11	54	56	1	5	36	1.31
23626011--23626094	25	3.2	25	73	12	78	26	8	15	50	1.72
23627320--23627467	55	2.6	57	86	9	198	46	1	2	50	1.21
23627359--23627450	20	4.9	19	70	20	77	44	0	2	53	1.12
23633408--23633480	31	2.4	32	88	6	107	58	0	4	36	1.17
23636837--23636870	16	2.1	17	88	5	52	44	0	0	55	0.99
23638223--23638327	32	3.2	32	78	6	86	46	11	6	35	1.66
23640817--23640938	42	2.9	42	86	3	147	17	24	15	42	1.88
23642954--23643166	92	2.3	92	85	2	286	32	15	22	30	1.94
23643244--23643376	38	3.5	38	74	6	135	36	17	17	28	1.92
23645875--23645899	13	1.9	13	100	0	50	32	0	0	68	0.90
23646171--23646201	14	2.3	13	94	5	53	3	12	0	83	0.75
23651263--23651287	7	3.6	7	100	0	50	16	0	28	56	1.41
23653873--23653924	18	3.1	16	76	13	59	73	0	25	1	0.94
23654697--23654745	20	2.5	20	86	0	62	32	8	12	46	1.71
23659547--23659577	14	2.2	14	94	0	53	48	12	0	38	1.42
23660517--23660584	22	3.1	22	82	0	91	39	17	26	16	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23661711--23661783	5	14.6	5	71	16	53	56	2	1	39	1.22
23661710--23661748	13	3.0	13	88	0	60	64	0	0	35	0.94
23661708--23661747	21	1.9	21	94	0	71	62	0	0	37	0.95
23663683--23663707	8	3.1	8	100	0	50	0	0	12	88	0.53
23664680--23664713	6	5.7	6	85	0	50	79	5	0	14	0.91
23665681--23665705	13	1.9	13	100	0	50	32	8	8	52	1.60
23671954--23671987	16	2.1	16	94	0	59	14	11	32	41	1.82
23673409--23673434	5	5.2	5	100	0	52	57	0	0	42	0.98
23673543--23673661	45	2.6	45	90	0	175	43	16	16	22	1.87
23673543--23673684	45	3.2	45	86	2	169	44	16	16	22	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199