genome.fa.s20.2.7.7.80.10.50.1000.173.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Length:  58101237

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  173  of  199  ( 23844 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50641755--50641789	16	2.2	16	100	0	70	62	11	5	20	1.48
50643339--50643375	17	2.1	18	90	5	58	10	40	29	18	1.85
50644033--50644066	6	5.7	6	86	13	52	82	0	2	14	0.79
50651926--50651963	2	19.0	2	100	0	76	50	0	50	0	1.00
50653606--50653647	21	2.0	21	85	4	57	26	0	7	66	1.17
50653829--50653890	18	3.6	18	77	12	67	37	0	4	58	1.20
50659756--50659789	17	2.0	17	88	0	50	35	0	29	35	1.58
50667061--50667264	98	2.1	98	92	0	338	46	11	5	36	1.64
50668241--50668278	19	2.0	19	85	10	51	52	0	2	44	1.14
50670553--50670589	16	2.4	16	90	4	58	8	0	18	72	1.08
50671155--50671188	13	2.5	14	90	4	52	44	0	5	50	1.26
50676354--50676478	62	2.0	62	95	0	223	34	22	15	28	1.94
50680845--50680887	16	2.8	16	86	6	63	41	0	58	0	0.98
50680839--50680886	23	2.0	24	84	11	64	45	0	54	0	0.99
50682269--50682806	215	2.5	214	94	1	936	35	22	16	25	1.94
50682778--50682947	66	2.5	68	83	6	193	32	23	15	28	1.95
50696171--50696227	23	2.5	23	86	8	73	14	7	40	38	1.73
50697440--50697467	13	2.2	13	100	0	56	0	14	7	78	0.95
50716049--50716087	20	1.9	21	94	5	71	61	15	17	5	1.51
50716943--50716986	20	2.2	20	83	0	61	43	6	9	40	1.63
50716973--50717496	17	29.9	17	68	17	177	43	11	12	33	1.78
50716973--50717495	35	14.9	34	72	13	235	43	11	12	33	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50716972--50717495	71	7.5	70	72	15	240	43	11	12	33	1.77
50717299--50717441	38	3.8	36	76	9	99	39	10	12	37	1.78
50717245--50717413	93	1.8	93	83	6	227	39	9	13	37	1.77
50717648--50717698	17	3.0	16	77	11	57	72	3	0	23	1.01
50717817--50717875	11	5.3	11	83	4	73	0	18	0	81	0.69
50717824--50717873	20	2.6	19	84	12	66	0	18	0	82	0.68
50717824--50717870	14	3.4	14	77	8	51	0	19	0	80	0.70
50718025--50718061	14	2.5	15	87	12	51	0	2	13	83	0.74
50718140--50718201	21	2.9	22	83	7	65	0	27	0	72	0.85
50718153--50718199	24	2.0	24	87	8	69	0	31	0	68	0.90
50718141--50718202	3	21.0	3	78	15	51	0	29	0	70	0.87
50718140--50718202	14	4.8	13	78	14	58	0	28	0	71	0.86
50718575--50718691	30	3.9	29	77	11	94	44	3	22	29	1.69
50718590--50718691	30	3.4	30	84	2	134	44	3	22	29	1.71
50718962--50719127	54	3.1	54	88	6	255	37	17	16	28	1.92
50719227--50719474	85	2.8	87	82	10	308	36	18	18	26	1.94
50719227--50719481	91	2.9	89	83	9	326	36	18	18	26	1.93
50719387--50719420	16	2.1	16	88	0	50	61	5	11	20	1.50
50719437--50719845	123	3.3	123	97	0	773	35	22	14	27	1.93
50719685--50720036	192	1.8	193	97	0	670	34	21	14	29	1.93
50733358--50733400	16	2.8	16	86	6	63	41	0	58	0	0.98
50733352--50733399	23	2.0	24	84	11	64	45	0	54	0	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50739467--50739495	6	4.8	6	100	0	58	65	17	0	17	1.27
50739585--50739611	9	3.0	9	100	0	54	22	11	22	44	1.84
50742253--50742322	9	7.4	9	71	15	52	65	2	0	31	1.07
50742250--50742385	10	14.4	9	69	17	64	61	3	0	34	1.19
50742253--50742354	18	5.4	19	69	13	77	61	3	0	34	1.14
50742518--50742570	26	2.0	28	85	7	74	67	3	0	28	1.07
50742618--50742660	22	2.0	22	85	0	59	58	4	0	37	1.19
50746486--50746511	5	5.2	5	100	0	52	19	0	38	42	1.51
50748742--50748795	9	6.0	9	77	0	54	57	3	1	37	1.27
50749726--50749973	100	2.5	97	86	3	327	22	24	24	28	2.00
50749831--50749982	50	3.1	50	70	7	141	23	25	25	26	2.00
50749789--50749958	50	3.5	47	67	10	126	21	22	25	30	1.99
50749726--50750008	97	2.9	96	85	5	347	23	23	24	28	1.99
50749847--50750010	50	3.3	50	71	11	144	21	23	24	29	1.99
50750103--50750226	50	2.5	50	89	0	185	27	27	20	25	1.99
50750261--50750744	88	5.5	89	89	3	685	25	25	20	28	1.99
50752052--50752091	13	2.9	13	88	7	53	12	15	0	72	1.12
50752597--50752634	11	3.5	11	82	10	51	2	0	10	86	0.66
50752597--50752641	10	4.4	10	86	5	63	2	2	8	86	0.73
50753427--50753457	15	2.1	15	100	0	62	61	6	0	32	1.21
50755843--50756045	101	2.0	101	96	0	370	26	27	15	31	1.96
50762520--50762814	46	6.2	46	80	9	313	28	23	18	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50762520--50762770	97	2.6	96	92	1	403	27	24	19	28	1.99
50762520--50762814	97	3.1	93	87	5	396	28	23	18	28	1.98
50774056--50774097	22	1.9	22	90	9	68	59	7	9	23	1.53
50774882--50774939	19	2.7	22	74	17	59	17	3	15	63	1.44
50774895--50774937	20	2.1	21	87	8	63	18	4	20	55	1.60
50777062--50777109	20	2.3	20	82	3	60	27	14	22	35	1.93
50780956--50781152	43	4.6	43	86	6	249	28	25	16	29	1.97
50780956--50781152	84	2.3	86	85	3	256	28	25	16	29	1.97
50781507--50781845	68	5.0	68	91	0	489	42	15	12	29	1.84
50793757--50793805	23	2.1	23	85	7	64	67	2	2	28	1.13
50794768--50794805	19	2.0	20	84	5	51	71	5	18	5	1.25
50797294--50797331	19	2.0	20	84	5	51	39	0	2	57	1.12
50797365--50797407	19	2.3	19	81	14	54	62	2	0	34	1.08
50797549--50797599	25	2.0	25	88	7	77	58	3	7	29	1.44
50801795--50801832	20	1.9	19	89	5	58	63	7	21	7	1.47
50803642--50803700	23	2.6	23	88	0	82	13	16	16	52	1.75
50805973--50806109	72	1.9	72	83	5	179	31	13	12	43	1.81
50806045--50806623	84	6.7	88	82	4	524	32	13	10	43	1.79
50806045--50806540	178	2.8	175	81	6	540	33	13	11	42	1.79
50818761--50818819	18	3.4	18	78	15	63	61	0	28	10	1.29
50822659--50822935	27	10.3	27	83	6	303	44	19	18	18	1.88
50823111--50823187	26	3.0	26	86	0	109	14	19	24	41	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50823293--50823358	28	2.4	28	84	2	89	24	21	22	31	1.98
50823290--50823385	33	3.1	33	72	17	87	22	21	25	30	1.99
50828240--50828437	48	4.1	48	90	1	281	30	10	10	48	1.71
50830517--50830541	12	2.1	12	100	0	50	48	8	0	44	1.32
50830799--50830855	28	2.0	28	86	6	80	68	10	0	21	1.19
50830816--50830855	15	2.9	13	86	13	62	72	7	0	20	1.08
50831105--50831176	31	2.3	31	79	18	87	36	31	0	31	1.58
50831173--50831219	14	3.3	14	79	11	51	2	36	0	61	1.08
50838005--50838075	31	2.2	33	83	11	87	38	1	4	56	1.28
50840088--50840161	27	2.7	28	91	6	116	43	9	0	47	1.36
50840235--50840301	27	2.5	27	92	0	107	26	29	28	14	1.96
50840343--50840456	4	27.2	4	73	19	67	68	0	30	0	0.96
50840355--50840407	5	11.0	5	74	22	51	66	0	33	0	0.92
50840343--50840455	24	4.3	26	67	24	76	69	0	30	0	0.95
50840361--50840490	39	3.5	38	83	12	132	67	0	31	0	0.96
50840379--50840473	12	8.3	12	66	19	51	65	0	33	1	1.00
50840348--50840489	44	3.4	44	76	18	144	68	0	30	0	0.95
50840522--50840559	19	2.0	19	85	10	51	31	0	7	60	1.25
50846830--50846882	26	2.0	26	85	7	72	47	7	1	43	1.42
50846802--50846914	62	1.9	61	85	7	151	50	11	0	37	1.45
50847058--50847110	3	17.7	3	100	0	106	67	32	0	0	0.91
50847109--50847146	3	12.3	3	88	5	58	63	2	2	31	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50847192--50847230	20	2.0	21	85	10	55	66	10	0	23	1.22
50847482--50847552	28	2.6	29	93	6	121	46	0	12	40	1.42
50849276--50849334	12	4.8	12	69	22	50	50	0	1	47	1.11
50856513--50857017	262	1.9	262	97	0	947	33	18	12	35	1.88
50858256--50858342	28	3.1	28	83	3	113	39	17	10	33	1.83
50868409--50868687	94	2.9	92	77	8	283	39	3	17	40	1.67
50868721--50869147	126	3.4	126	90	0	660	33	19	21	25	1.97
50869096--50869177	43	1.9	43	90	5	130	29	29	19	21	1.98
50872575--50872619	21	2.1	21	83	0	54	8	26	35	28	1.87
50874677--50874724	24	2.0	25	87	4	71	58	2	0	39	1.10

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199