genome.fa.s20.2.7.7.80.10.50.1000.143.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Length:  58101237

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  143  of  199  ( 23844 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41727729--41727770	15	3.0	14	86	10	59	23	11	0	64	1.27
41727729--41727765	15	2.5	15	95	0	65	18	8	0	72	1.08
41727811--41727840	11	2.7	11	100	0	60	13	0	6	80	0.91
41728530--41728567	19	2.0	19	100	0	76	21	21	21	36	1.95
41737592--41737736	47	3.2	46	68	16	120	44	2	4	48	1.38
41737573--41737780	91	2.3	91	87	2	292	45	4	3	47	1.39
41737919--41737970	15	3.6	15	80	12	56	44	0	1	53	1.11
41737796--41738087	118	2.5	119	90	5	461	42	2	5	50	1.36
41738004--41738045	16	2.5	16	81	18	50	50	2	4	42	1.36
41737866--41738050	59	3.1	57	66	20	146	42	2	7	48	1.42
41738044--41738085	15	2.7	16	82	14	52	45	0	2	52	1.13
41738022--41738076	15	3.7	15	77	18	53	47	0	1	50	1.11
41738023--41738291	147	1.9	143	93	4	468	47	2	3	46	1.34
41738178--41738212	18	2.0	17	88	5	52	45	0	0	54	0.99
41738371--41738465	45	2.1	44	88	5	138	33	26	6	33	1.82
41738446--41738495	16	3.1	16	88	0	73	34	34	0	32	1.58
41742258--41742294	10	3.7	10	92	0	56	13	5	0	81	0.86
41742253--41742302	22	2.3	22	86	10	75	18	6	4	72	1.22
41755316--41755427	40	2.9	38	89	6	156	28	25	19	25	1.99
41756959--41757135	55	3.2	55	89	0	246	31	29	12	26	1.93
41756959--41757110	27	5.6	27	92	3	232	30	28	13	27	1.94
41758781--41758898	40	3.0	39	75	9	114	23	27	22	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41760025--41760144	56	2.1	56	98	0	231	22	23	9	45	1.81
41766619--41766843	40	5.6	39	80	6	202	25	28	20	24	1.99
41766619--41766843	80	2.8	82	79	7	223	25	28	20	24	1.99
41767973--41768092	56	2.1	56	98	0	231	22	23	9	45	1.81
41776341--41776371	16	1.9	16	93	0	53	29	16	6	48	1.70
41779639--41779693	15	3.8	14	76	7	56	72	3	21	1	1.09
41780862--41780955	46	2.0	46	93	4	163	35	22	18	24	1.96
41796357--41796411	25	2.2	25	83	9	67	69	1	23	5	1.19
41796344--41796398	12	4.4	12	78	17	51	72	1	21	3	1.09
41799070--41800419	679	2.0	673	89	3	2070	28	19	17	35	1.94
41804175--41804217	22	2.0	22	85	0	59	25	30	16	27	1.97
41814255--41814298	18	2.4	18	88	11	63	72	0	20	6	1.07
41816035--41816109	33	2.2	34	95	2	134	37	5	13	44	1.66
41826145--41826183	18	2.2	18	90	9	62	71	2	20	5	1.17
41827876--41827947	33	2.1	34	92	2	119	38	6	13	40	1.72
41832521--41832559	18	2.2	18	90	9	62	71	2	20	5	1.17
41835575--41835784	40	5.3	40	87	0	269	25	30	20	23	1.99
41835573--41835836	120	2.2	118	79	4	278	25	29	21	24	1.99
41843525--41843734	40	5.3	40	86	0	260	25	30	20	24	1.99
41845352--41845423	33	2.1	34	92	2	119	38	6	13	40	1.72
41848017--41848062	24	1.9	24	86	8	67	19	10	10	58	1.61
41849613--41849659	16	2.6	19	90	9	73	74	0	21	4	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41859178--41859211	11	2.9	12	86	4	52	67	2	8	20	1.31
41860225--41860299	12	6.2	12	70	11	64	69	4	16	10	1.32
41860286--41860340	25	2.2	26	81	12	62	63	0	23	12	1.29
41866865--41866965	52	1.9	52	95	0	184	26	18	21	32	1.97
41873455--41873555	52	1.9	52	91	0	166	26	17	22	32	1.97
41873759--41873917	79	2.0	79	98	0	309	54	23	3	18	1.59
41875714--41875758	12	3.7	12	85	5	63	75	8	4	11	1.17
41875714--41875761	13	3.8	13	86	2	62	72	10	4	12	1.24
41875797--41875848	13	4.0	13	90	9	88	63	0	13	23	1.29
41875797--41875849	26	2.0	27	96	3	99	64	0	13	22	1.28
41879993--41880041	23	2.2	22	82	7	62	30	4	24	40	1.74
41888817--41889350	47	11.1	47	92	3	807	32	9	28	29	1.88
41888817--41889350	239	2.2	239	96	1	969	32	9	28	29	1.88
41889522--41889600	37	2.1	37	88	0	113	25	17	31	25	1.97
41891101--41891158	15	3.6	16	86	9	82	22	12	3	62	1.45
41891194--41891239	11	4.0	11	89	10	74	17	8	2	71	1.21
41891195--41891251	13	4.7	12	87	8	71	19	7	3	70	1.26
41892239--41892284	23	2.1	23	84	8	60	52	13	4	30	1.59
41894909--41894941	11	3.1	11	82	8	50	24	33	12	30	1.91
41895730--41895756	11	2.5	11	100	0	54	77	7	0	14	0.97
41895729--41895761	11	2.8	12	86	13	50	78	9	0	12	0.95
41902444--41902483	20	2.0	20	100	0	80	30	35	20	15	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41904990--41905139	55	2.8	54	80	4	149	26	15	29	28	1.96
41904962--41905139	27	6.6	27	77	6	146	25	15	28	30	1.96
41904963--41905118	82	1.9	81	81	6	190	25	16	28	30	1.96
41925974--41926276	40	7.6	40	89	2	387	27	28	20	24	1.99
41928503--41929198	47	14.6	47	91	2	1086	33	8	29	29	1.86
41928503--41929198	96	7.3	95	93	1	1101	33	8	29	29	1.86
41928503--41929198	143	4.9	143	93	2	1112	33	8	29	29	1.86
41937421--41937461	20	2.0	20	90	0	64	34	14	24	26	1.94
41938030--41938097	20	3.4	20	83	0	91	25	32	19	23	1.97
41945880--41945913	11	3.2	11	83	8	52	23	32	14	29	1.94
41946718--41946754	11	3.2	12	81	11	51	78	5	2	13	1.03
41948949--41948978	15	1.9	16	93	6	53	63	0	20	16	1.31
41952383--41952416	11	3.2	11	83	8	52	23	32	14	29	1.94
41960847--41960899	23	2.4	22	75	9	54	9	20	1	67	1.28
41960951--41960989	18	2.2	18	90	9	62	5	20	2	71	1.17
41966773--41966805	11	3.0	11	83	16	50	39	15	18	27	1.90
41974405--41974443	19	2.1	19	90	0	60	30	10	12	46	1.75
41978220--41978286	20	3.3	20	89	4	100	28	17	29	23	1.97
41980800--41980863	20	3.2	20	86	4	76	34	15	26	23	1.95
41983656--41983739	40	2.1	41	88	2	125	44	14	11	29	1.81
41990674--41990717	12	3.6	12	90	3	61	72	4	4	18	1.19
41990674--41990718	13	3.5	13	87	6	65	73	4	4	17	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41999365--41999409	21	2.1	21	84	8	56	51	11	4	33	1.58
42010815--42010964	28	5.6	27	91	4	223	30	29	13	26	1.94
42010815--42010989	55	3.2	54	87	4	235	31	29	13	25	1.93
42018800--42018924	27	4.6	27	91	3	187	30	28	13	27	1.94
42018800--42018924	55	2.3	55	91	0	196	30	28	13	27	1.94
42024417--42024740	162	2.0	162	90	1	506	19	21	20	38	1.94
42025235--42025319	6	13.8	6	74	4	71	71	2	20	5	1.18
42025235--42025319	24	3.5	24	81	3	98	71	2	20	5	1.18
42025319--42025353	18	1.9	18	88	11	54	57	0	17	25	1.40
42030986--42031057	30	2.4	30	80	0	81	27	34	6	30	1.83
42035440--42035478	18	2.1	18	90	9	60	71	2	20	5	1.17
42035435--42035489	21	2.7	20	81	18	60	69	5	21	3	1.25
42035454--42035505	27	1.9	27	84	0	68	65	1	25	7	1.30
42035528--42035573	18	2.5	19	75	10	51	60	0	26	13	1.32
42037232--42037295	33	1.9	33	90	0	101	39	9	10	40	1.73
42050663--42050756	46	2.0	46	89	4	145	34	21	21	23	1.97
42053450--42053489	18	2.2	18	86	4	53	12	27	0	60	1.33
42054964--42055057	46	2.0	46	89	4	145	32	22	19	25	1.97
42064109--42064411	40	7.6	40	89	2	396	27	28	20	24	1.99
42072086--42072388	40	7.6	40	89	2	396	27	28	20	24	1.99
42090358--42090435	39	2.0	39	89	0	120	29	34	6	29	1.82
42091668--42091721	27	2.0	28	85	3	74	51	12	7	27	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42092923--42092949	14	1.9	14	100	0	54	33	22	14	29	1.94
42095204--42095248	12	3.8	12	82	2	56	15	22	0	62	1.33
42095232--42095271	18	2.3	18	91	4	64	7	17	5	70	1.30
42095232--42095284	18	2.9	18	83	8	54	13	16	5	64	1.47
42114299--42114382	28	3.2	25	75	18	73	75	1	17	5	1.07
42114300--42114381	23	3.6	22	74	16	71	75	1	17	6	1.06
42114299--42114381	30	2.8	30	81	15	93	75	1	16	6	1.06
42114303--42114382	14	5.9	14	73	16	62	73	1	18	6	1.11
42118148--42118210	23	2.7	23	80	9	74	38	26	4	30	1.77
42121919--42121954	17	2.1	18	89	5	56	8	22	5	63	1.43

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199