genome.fa.s20.2.7.7.80.10.50.1000.158.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Length:  58101237

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  158  of  199  ( 23844 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46467771--46467799	9	3.2	9	100	0	58	55	0	0	44	0.99
46467748--46467799	18	2.7	20	82	14	56	51	1	1	44	1.23
46481187--46481217	12	2.6	12	94	0	53	25	38	25	9	1.86
46487679--46487717	18	2.1	18	85	4	51	64	2	5	28	1.28
46490814--46490991	27	6.6	27	81	3	169	29	27	15	26	1.96
46496337--46496428	47	2.0	47	93	0	157	34	8	15	41	1.78
46496782--46496862	20	4.1	20	76	12	76	12	25	19	41	1.87
46499161--46499237	27	2.8	29	67	13	72	45	3	3	46	1.39
46499263--46499324	25	2.5	24	77	12	63	50	1	1	46	1.20
46508069--46508124	25	2.2	25	93	0	94	12	7	25	55	1.62
46511967--46512025	21	2.7	21	86	5	82	64	3	28	3	1.26
46527399--46527430	9	3.6	9	100	0	64	43	0	0	56	0.99
46527389--46527432	18	2.5	17	82	10	61	40	0	2	56	1.11
46534323--46534366	21	2.0	23	86	8	65	47	9	6	36	1.62
46535182--46535211	13	2.2	14	94	5	53	43	0	13	43	1.43
46536773--46536806	17	1.9	17	88	5	50	55	0	0	44	0.99
46539021--46539066	23	2.0	23	95	0	83	47	10	0	41	1.38
46539023--46539072	23	2.2	23	88	0	73	52	12	0	36	1.39
46539677--46539765	39	2.2	40	84	5	110	39	4	4	51	1.42
46545548--46545574	4	6.8	4	100	0	54	22	0	0	77	0.76
46545764--46545865	28	3.6	28	72	7	82	30	4	14	50	1.64
46546686--46546763	11	6.8	12	71	17	67	25	26	1	46	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46546725--46546822	51	1.9	51	83	4	126	28	24	2	44	1.65
46548597--46548636	18	2.2	18	86	0	53	17	30	5	47	1.69
46549132--46549737	22	28.0	22	81	6	677	44	28	0	25	1.57
46549132--46549737	65	9.3	67	81	6	623	44	28	0	25	1.57
46549132--46549737	43	14.0	43	84	5	679	44	28	0	25	1.57
46552904--46553470	125	4.5	125	82	3	658	30	22	16	30	1.95
46552904--46553443	252	2.2	249	84	4	694	30	22	16	30	1.96
46566453--46566509	20	2.8	20	89	0	78	26	28	0	45	1.54
46570115--46570175	17	3.7	16	72	14	61	45	1	3	49	1.28
46573142--46573200	27	2.2	26	79	8	66	66	1	1	30	1.12
46576934--46577183	123	2.0	123	98	0	482	40	19	20	19	1.92
46579512--46579540	13	2.1	14	93	6	51	10	6	0	82	0.83
46580107--46580171	11	6.0	10	78	16	67	23	30	0	46	1.53
46580107--46580170	23	2.9	21	88	11	101	21	31	0	46	1.52
46580110--46580179	11	6.4	11	79	11	63	21	32	1	44	1.61
46585582--46585767	44	4.2	44	88	0	282	26	24	22	26	2.00
46585582--46585767	88	2.1	88	94	0	327	26	24	22	26	2.00
46585863--46586001	45	3.1	45	69	8	131	25	26	19	28	1.99
46585893--46586730	87	9.6	87	81	3	891	23	26	24	25	2.00
46585893--46586730	175	4.8	174	81	3	970	23	26	24	25	2.00
46586162--46586729	43	13.0	44	68	7	253	22	26	25	25	2.00
46585805--46586730	262	3.5	262	87	1	1275	23	25	24	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46588956--46589013	25	2.3	25	91	8	91	6	8	6	77	1.12
46597529--46597567	19	2.1	19	95	0	69	0	46	10	43	1.37
46600847--46601051	88	2.3	91	87	5	283	45	3	3	47	1.38
46600969--46601094	47	2.6	49	71	11	114	43	2	2	51	1.27
46601201--46601242	15	2.7	16	82	14	52	45	0	2	52	1.13
46601192--46601233	15	2.9	15	82	10	52	47	0	0	52	1.00
46601390--46601480	45	2.0	45	85	2	121	35	28	5	30	1.80
46601461--46601510	16	3.1	16	91	0	82	34	36	0	30	1.58
46601769--46602180	126	3.3	126	91	0	646	29	21	16	31	1.96
46602221--46602521	96	3.1	94	83	4	381	40	18	3	37	1.67
46602545--46602581	15	2.4	16	90	4	58	43	29	0	27	1.55
46602547--46602628	14	5.7	15	82	8	57	45	34	0	20	1.52
46602564--46602634	7	10.4	7	83	3	83	45	36	0	18	1.50
46603433--46603544	40	2.8	39	83	4	145	40	25	16	17	1.91
46603612--46603805	41	4.8	41	87	4	268	25	21	24	29	1.99
46603915--46603965	26	2.0	26	84	0	66	58	5	11	23	1.55
46604149--46604182	14	2.4	14	95	0	59	26	0	23	50	1.50
46604234--46604266	14	2.3	15	94	5	59	30	0	33	36	1.58
46604504--46604750	129	1.9	130	79	4	275	32	1	18	47	1.57
46610010--46610043	14	2.4	14	95	0	59	26	0	23	50	1.50
46610090--46610141	7	7.3	7	78	4	50	28	1	26	42	1.66
46610151--46610408	139	1.9	139	85	4	360	29	0	28	41	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46613007--46613198	43	4.6	40	80	13	156	26	16	26	30	1.96
46613007--46613198	86	2.3	85	79	9	205	26	16	26	30	1.96
46613353--46613415	30	2.1	30	93	0	108	25	3	14	57	1.52
46623151--46623237	37	2.4	37	80	5	95	14	12	40	32	1.84
46623148--46623239	38	2.5	37	82	3	105	15	11	40	32	1.84
46629236--46629275	18	2.2	18	86	8	55	50	10	17	22	1.76
46636535--46636651	38	2.6	46	72	27	124	34	29	11	23	1.91
46636562--46636638	38	2.0	38	100	0	154	38	32	10	18	1.84
46637550--46637596	23	2.1	22	88	11	69	25	17	4	53	1.62
46637857--46637909	26	2.0	26	85	7	72	28	30	20	20	1.98
46640496--46640528	10	3.5	10	84	16	52	27	0	24	48	1.51
46643487--46643524	19	2.0	19	89	0	58	36	7	23	31	1.84
46644022--46644094	35	2.1	35	89	0	110	38	30	12	19	1.88
46651295--46651414	41	2.9	41	77	0	132	22	19	28	30	1.98
46651766--46651812	14	3.3	15	88	8	71	25	0	34	40	1.56
46651778--46651848	21	3.3	22	78	7	65	22	1	38	38	1.63
46651846--46651879	14	2.4	14	90	9	52	23	2	44	29	1.68
46651819--46651904	15	5.8	16	75	15	62	23	2	40	33	1.67
46652287--46652340	19	2.9	18	78	8	63	72	3	3	20	1.16
46652650--46653108	124	3.7	124	88	0	632	32	18	22	26	1.97
46653289--46653335	16	2.9	16	93	0	76	8	48	14	27	1.73
46653428--46653495	22	3.1	21	75	12	75	26	23	10	39	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46654226--46654252	14	1.9	14	100	0	54	29	14	11	44	1.80
46654691--46654771	38	2.2	37	88	2	117	30	1	0	67	0.98
46654716--46654776	25	2.3	26	86	5	79	34	0	0	65	0.93
46656390--46656430	3	13.7	3	94	0	73	63	2	0	34	1.08
46657045--46657083	16	2.3	18	86	8	55	64	7	23	5	1.40
46658062--46658111	17	2.7	19	81	12	68	42	2	0	56	1.11
46658070--46658116	17	2.8	17	90	0	67	38	2	0	59	1.09
46658062--46658127	19	3.6	19	80	12	75	39	3	0	57	1.14
46658186--46658518	9	38.4	9	72	15	222	45	19	0	34	1.57
46658190--46658516	25	13.0	25	75	12	125	45	19	0	34	1.57
46658186--46658474	16	17.8	16	68	22	115	44	20	1	33	1.58
46658215--46658399	34	5.2	34	70	22	139	42	21	1	34	1.60
46658303--46658359	29	2.0	29	89	0	87	42	17	1	38	1.60
46662284--46662347	12	5.5	12	87	3	69	32	4	1	60	1.26
46662296--46662347	3	17.0	3	88	4	77	34	3	0	61	1.14
46663131--46663331	108	1.9	106	87	4	296	29	16	17	36	1.92
46667533--46667565	9	3.8	9	88	4	50	87	3	0	9	0.63
46668306--46668338	9	3.7	9	100	0	66	90	9	0	0	0.44
46668306--46668355	17	2.9	17	87	3	64	88	6	2	4	0.70
46668305--46668355	26	2.0	26	88	0	75	86	7	1	3	0.77
46668369--46668403	3	12.3	3	88	11	56	68	0	31	0	0.90
46668491--46668602	43	2.6	45	80	7	115	31	12	27	28	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46669845--46671345	100	15.1	99	82	5	1552	32	22	20	23	1.98
46669846--46671345	498	3.0	498	88	2	2068	32	22	20	23	1.98
46670655--46671183	147	3.5	147	73	7	413	32	23	20	23	1.98
46669959--46671324	50	27.4	49	68	8	437	32	22	20	23	1.98
46673244--46673286	12	3.6	12	90	0	59	30	4	2	62	1.28
46673256--46673304	3	16.0	3	87	4	71	34	4	0	61	1.15
46674088--46674288	108	1.9	106	89	4	314	29	16	17	36	1.92
46677317--46677377	21	3.2	21	61	29	55	27	19	8	44	1.79
46677318--46677386	35	2.0	35	100	0	138	28	20	7	43	1.78
46677948--46678002	27	2.2	23	84	12	65	14	9	0	76	1.02

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199