genome.fa.s20.2.7.7.80.10.50.1000.186.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Length:  58101237

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  186  of  199  ( 23844 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54045784--54045838	27	2.1	26	83	10	67	29	0	1	69	0.99
54045788--54045845	27	2.2	27	81	9	66	37	0	1	60	1.07
54047305--54047339	18	1.9	18	94	0	61	65	5	2	25	1.28
54047377--54047493	27	4.4	27	82	2	110	18	38	25	17	1.92
54047568--54047619	19	2.7	20	82	8	72	75	0	21	3	0.97
54047562--54047620	14	4.2	14	72	20	52	72	0	20	6	1.06
54051836--54051867	16	1.9	17	93	6	57	37	21	0	40	1.54
54052028--54052191	43	3.9	41	79	12	163	31	28	17	21	1.96
54052028--54052184	83	1.9	84	83	9	205	30	28	18	22	1.97
54058731--54058762	16	1.9	17	93	6	57	37	21	0	40	1.54
54058923--54059086	43	3.9	41	79	12	163	32	28	17	21	1.96
54058923--54059079	83	1.9	84	83	9	205	31	28	18	21	1.97
54060672--54060700	14	2.1	14	100	0	58	51	6	0	41	1.28
54061917--54061951	14	2.5	14	85	0	52	37	5	20	37	1.76
54063996--54064033	19	2.0	19	90	10	60	0	31	0	68	0.90
54070668--54070758	46	2.0	44	83	8	112	31	3	24	40	1.71
54072023--54072066	16	2.8	16	96	0	79	25	22	25	27	2.00
54084511--54084664	59	2.6	60	90	2	229	42	3	5	49	1.41
54092280--54092366	45	1.9	44	82	13	106	39	4	22	33	1.75
54092549--54092607	26	2.3	26	82	5	75	38	13	16	30	1.88
54097878--54097905	4	7.0	4	100	0	56	25	0	25	50	1.50
54100240--54100287	23	2.1	22	88	3	69	35	10	2	52	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54102012--54102245	84	2.8	84	80	10	269	36	18	12	32	1.88
54102332--54102475	9	15.4	9	67	17	55	63	2	1	32	1.17
54102365--54102404	20	2.0	20	85	9	55	55	0	0	45	0.99
54102408--54102444	8	4.5	8	90	6	56	72	5	0	21	1.04
54106752--54106803	21	2.4	22	84	12	63	71	15	5	7	1.29
54106756--54106803	24	2.0	24	88	4	71	70	16	6	6	1.28
54107434--54107477	11	3.9	11	84	3	61	45	2	31	20	1.64
54109662--54109686	3	8.3	3	100	0	50	68	0	0	32	0.90
54117937--54117994	23	2.6	23	81	8	66	29	0	6	63	1.20
54117941--54117985	20	2.2	20	84	7	56	24	0	8	66	1.20
54118214--54118285	31	2.4	29	81	9	83	47	9	11	31	1.72
54119194--54119230	5	7.4	5	100	0	74	40	40	0	18	1.51
54123244--54123268	13	1.9	13	100	0	50	40	16	28	16	1.89
54123782--54123845	22	2.9	23	69	17	55	54	0	3	42	1.16
54123965--54124023	19	3.1	18	75	20	50	40	1	3	54	1.27
54126167--54126233	4	16.8	4	96	0	125	23	1	23	50	1.57
54151057--54151096	19	2.1	19	85	0	53	47	0	0	52	1.00
54176165--54176199	8	4.4	8	96	0	52	5	17	0	77	0.96
54176169--54176200	4	8.0	4	92	0	55	3	21	0	75	0.95
54187857--54187915	29	2.0	29	90	0	91	44	27	15	13	1.84
54190213--54190359	37	3.9	37	73	8	129	33	14	16	35	1.90
54190221--54190370	75	2.0	74	79	6	160	34	14	16	35	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54191135--54191182	25	1.9	25	87	8	71	25	29	31	14	1.95
54191804--54191830	5	5.4	5	100	0	54	40	18	0	40	1.51
54197640--54197721	44	1.9	41	80	14	94	37	4	8	48	1.55
54198086--54198201	49	2.4	49	76	5	119	24	15	31	28	1.95
54198725--54198847	49	2.5	49	81	5	142	30	30	14	24	1.95
54199063--54199166	52	2.0	52	100	0	208	30	3	26	38	1.74
54201692--54201938	50	4.8	50	78	4	219	28	21	27	22	1.99
54204400--54204442	18	2.3	18	80	4	50	16	13	2	67	1.33
54205224--54205276	17	3.1	18	81	5	56	49	0	1	49	1.12
54205248--54205398	62	2.4	62	96	0	275	50	5	3	40	1.41
54205377--54205425	20	2.7	18	77	22	57	51	4	2	42	1.32
54205409--54205480	38	1.9	37	83	13	94	54	5	1	38	1.33
54205898--54205937	9	4.3	9	90	3	62	40	0	2	57	1.12
54235234--54235301	4	17.5	4	92	6	104	50	27	0	22	1.49
54237604--54237639	4	9.0	4	100	0	72	25	0	25	50	1.50
54241334--54241412	39	2.0	39	97	0	149	31	21	20	26	1.98
54243249--54243294	24	1.9	24	82	8	58	56	4	6	32	1.45
54243715--54243776	23	2.7	24	82	7	67	25	3	11	59	1.46
54244189--54244228	21	2.0	19	85	9	53	65	2	0	32	1.06
54245746--54245788	21	2.0	21	95	0	77	27	0	37	34	1.57
54245769--54245801	16	2.1	16	94	0	57	33	0	36	30	1.58
54245780--54245874	45	2.1	44	88	1	136	34	5	27	32	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54246035--54246069	18	2.0	17	88	5	52	54	0	0	45	0.99
54253310--54253385	4	19.0	4	91	0	71	0	61	0	38	0.96
54253311--54253385	12	6.4	12	86	6	82	0	62	0	37	0.95
54253313--54253383	8	8.9	8	90	0	79	0	63	0	36	0.95
54256345--54256443	50	2.0	50	100	0	198	34	8	12	45	1.71
54256748--54256772	12	2.1	12	100	0	50	28	16	8	48	1.74
54257014--54257095	40	2.0	40	100	0	164	24	24	9	41	1.85
54261439--54261464	10	2.6	10	100	0	52	11	0	53	34	1.37
54268086--54268124	18	2.2	18	100	0	78	41	10	10	38	1.73
54268316--54268357	19	2.3	19	80	15	52	40	2	0	57	1.12
54269684--54269748	26	2.3	27	75	19	62	36	12	15	35	1.85
54270016--54270071	17	3.5	17	72	22	57	33	1	0	64	1.04
54270005--54270070	31	2.1	32	88	2	98	36	1	1	60	1.15
54270151--54270197	25	1.9	24	82	4	58	40	8	2	48	1.45
54270822--54271013	98	2.0	98	100	0	384	32	14	9	43	1.78
54277605--54277639	2	17.5	2	100	0	70	0	48	0	51	1.00
54284645--54284726	31	3.0	25	70	24	67	43	15	0	40	1.47
54284665--54284741	34	2.4	31	84	6	91	51	11	0	36	1.38
54284972--54285013	14	3.0	14	76	13	50	40	9	11	38	1.75
54284982--54285048	34	1.9	35	87	3	100	35	8	10	44	1.70
54285855--54285896	2	21.0	2	100	0	84	0	50	0	50	1.00
54296941--54296980	21	1.9	21	84	0	53	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54314834--54314869	5	7.2	5	100	0	72	19	61	19	0	1.35
54315903--54315958	25	2.2	25	81	12	62	42	5	3	48	1.43
54321506--54321563	27	2.2	26	87	3	80	36	20	6	36	1.80
54324213--54324241	15	1.9	15	100	0	58	27	27	0	44	1.54
54325351--54325410	30	2.0	30	96	0	111	40	26	5	28	1.77
54325980--54326039	30	2.0	30	83	3	75	41	0	38	20	1.52
54326253--54326289	9	4.1	9	92	0	65	29	10	13	45	1.77
54335154--54335257	38	2.6	39	79	15	124	30	3	3	61	1.32
54335164--54335235	19	3.7	19	81	10	83	30	4	4	61	1.34
54340854--54340910	21	2.7	21	91	8	89	0	15	15	68	1.22
54341444--54341501	30	1.9	30	83	13	75	43	6	24	25	1.79
54341712--54341743	13	2.5	13	94	0	55	31	0	12	56	1.37
54341838--54342079	50	4.7	50	86	3	295	26	23	30	19	1.98
54341838--54342079	100	2.3	103	88	4	355	26	23	30	19	1.98
54347405--54347485	25	3.2	25	76	11	78	34	24	22	18	1.96
54347462--54347564	27	3.8	27	96	0	179	33	19	26	21	1.97
54354815--54354904	30	3.0	29	79	4	99	32	16	14	36	1.89
54357291--54357386	51	1.9	49	82	4	120	31	18	7	42	1.78
54375168--54376002	417	2.0	416	95	0	1483	32	12	11	43	1.79
54381613--54381663	21	2.4	22	81	12	63	64	3	0	31	1.11
54382674--54382741	28	2.4	28	80	9	77	14	20	10	54	1.69
54382839--54382957	37	3.1	38	76	10	132	38	10	8	42	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54382797--54383001	44	4.8	43	76	11	190	39	12	7	40	1.71
54384772--54384815	20	2.2	20	84	8	54	63	15	15	4	1.46
54398544--54398595	15	3.5	15	77	12	54	67	0	7	25	1.17
54400033--54400091	25	2.4	25	86	8	77	6	3	42	47	1.46
54400044--54400091	25	2.0	25	91	4	80	6	4	41	47	1.48
54402766--54402790	7	3.6	7	100	0	50	0	60	0	40	0.97
54403431--54403463	3	11.0	3	100	0	66	33	0	0	66	0.92
54403523--54403574	19	2.7	20	76	11	63	34	11	0	53	1.37
54404057--54404257	106	1.9	106	93	0	348	30	19	18	30	1.96
54405171--54405214	20	2.3	19	81	11	54	31	2	9	56	1.43

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199