genome.fa.s20.2.7.7.80.10.50.1000.168.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Length:  58101237

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  168  of  199  ( 23844 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49269300--49269642	79	4.5	76	86	5	435	32	15	20	32	1.93
49269796--49269937	72	2.0	73	91	1	232	21	15	23	38	1.92
49269941--49270204	77	3.5	74	85	9	342	32	15	20	31	1.94
49270365--49270498	70	1.9	70	95	0	241	34	15	18	31	1.93
49270503--49270666	76	2.2	73	85	6	217	26	16	18	38	1.92
49270503--49270666	71	2.3	70	84	7	211	26	16	18	38	1.92
49270643--49270684	14	2.9	15	85	7	59	14	14	7	64	1.48
49270646--49270696	15	3.5	15	84	5	61	19	11	3	64	1.41
49270570--49270771	105	1.9	105	84	6	266	26	15	16	41	1.88
49270697--49270958	73	3.5	73	88	3	407	29	16	22	31	1.96
49270503--49270845	178	1.9	175	85	5	467	27	15	18	38	1.92
49270689--49270995	73	4.1	75	84	5	406	28	16	21	33	1.95
49270342--49271059	329	2.2	325	85	6	946	28	16	18	37	1.92
49270972--49271013	14	2.9	15	85	7	59	14	14	7	64	1.48
49270975--49271024	14	3.6	14	81	7	57	20	12	4	64	1.43
49271772--49271946	30	5.8	30	90	0	278	25	48	4	22	1.68
49271772--49271946	60	2.9	60	94	0	314	25	48	4	22	1.68
49272433--49272564	25	5.5	23	69	13	72	34	3	3	58	1.32
49272510--49272648	25	5.5	25	72	12	97	33	6	4	56	1.45
49272498--49272599	27	3.7	28	73	12	77	32	5	3	57	1.41
49272628--49272686	20	2.8	21	72	12	59	33	6	5	54	1.49
49272801--49272848	16	3.1	15	90	6	69	31	2	2	64	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49272801--49272852	8	6.5	8	82	8	61	30	1	1	65	1.14
49281612--49281765	60	2.5	61	83	4	186	40	13	7	38	1.74
49281884--49281950	33	2.0	33	100	0	134	34	14	11	38	1.84
49283255--49283296	9	4.5	10	80	14	54	71	11	9	7	1.31
49291086--49291112	13	2.1	13	100	0	54	44	22	0	33	1.53
49304585--49304663	41	1.9	41	94	0	140	22	18	18	39	1.93
49305018--49305052	15	2.3	15	90	0	52	8	14	8	68	1.38
49307634--49307723	19	4.9	18	67	14	58	44	2	3	50	1.31
49309847--49309879	14	2.4	14	95	5	59	18	36	27	18	1.94
49309848--49309888	14	3.1	13	89	10	57	17	36	29	17	1.92
49311587--49311701	43	2.6	44	74	9	119	23	17	28	30	1.97
49313833--49313857	13	1.9	13	100	0	50	24	24	36	16	1.94
49314282--49314377	38	2.5	38	82	1	111	32	16	17	33	1.93
49320182--49320393	41	5.1	41	94	0	334	27	20	27	24	1.99
49324074--49324132	3	20.0	3	77	10	59	62	3	1	32	1.21
49325123--49325171	19	2.6	18	87	9	71	14	20	51	14	1.77
49325813--49326155	44	7.8	44	68	13	195	28	25	17	28	1.97
49325752--49326669	132	7.1	132	89	3	1106	29	23	17	28	1.97
49327920--49328019	7	13.7	7	75	16	71	0	19	0	81	0.70
49327926--49328019	9	10.3	9	73	19	79	0	19	0	80	0.70
49327926--49328019	8	11.5	8	74	17	86	0	19	0	80	0.70
49327922--49328018	15	6.6	15	78	16	105	0	19	0	80	0.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49327921--49328017	25	4.2	22	82	11	90	0	19	0	80	0.71
49332453--49332577	46	2.7	47	79	1	126	28	13	27	30	1.94
49337186--49337241	7	8.0	7	100	0	112	42	0	0	57	0.99
49340133--49340251	56	2.0	60	84	6	156	32	12	8	46	1.72
49341282--49341315	17	2.0	17	88	11	52	47	8	14	29	1.75
49342595--49342639	23	2.0	23	87	8	67	37	0	0	62	0.96
49342595--49342634	10	3.9	10	80	6	53	32	0	0	67	0.91
49352284--49352350	31	2.2	31	100	0	134	61	11	0	26	1.31
49353583--49353747	61	2.7	61	80	3	154	42	13	18	25	1.87
49354656--49354706	20	2.6	20	81	3	68	54	1	0	43	1.11
49354931--49354994	13	4.9	13	84	0	83	31	9	23	35	1.87
49355856--49355925	34	2.0	35	91	2	115	45	14	4	35	1.64
49361886--49361931	3	15.3	3	100	0	92	32	0	0	67	0.91
49366770--49367640	89	9.8	89	80	2	870	28	22	23	25	1.99
49366770--49367663	267	3.3	266	78	2	968	28	22	23	25	1.99
49367692--49368623	100	9.3	100	83	1	1109	32	22	20	24	1.98
49367692--49368623	299	3.1	296	84	2	1164	32	22	20	24	1.98
49368488--49377357	100	88.8	99	76	6	5189	33	21	20	25	1.97
49368490--49377409	200	44.6	200	78	5	5961	33	21	20	25	1.97
49367692--49368771	399	2.7	398	82	3	1008	33	22	20	24	1.97
49368340--49377614	499	18.6	495	77	5	6671	33	21	20	25	1.97
49373021--49373469	224	2.0	225	86	3	620	34	21	18	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49373404--49375982	50	51.7	49	67	5	477	33	21	20	25	1.97
49376032--49376101	36	1.9	36	94	0	122	48	10	12	28	1.74
49375942--49376201	136	1.9	136	81	1	315	36	17	18	26	1.93
49375837--49376301	236	2.0	236	82	1	574	34	19	19	26	1.96
49368141--49377606	449	21.1	448	69	5	2412	33	21	20	25	1.97
49376685--49377357	199	3.4	199	87	1	956	32	19	21	26	1.97
49376984--49377706	349	2.1	349	88	1	1045	32	19	21	26	1.97
49376073--49377857	299	6.0	296	78	2	1183	31	20	21	26	1.98
49376984--49377816	349	2.4	349	83	2	931	32	20	21	26	1.97
49376073--49377890	100	18.2	100	83	1	1164	31	20	21	26	1.98
49376083--49377890	50	36.2	48	68	7	570	31	20	21	26	1.98
49379661--49379723	3	21.0	3	100	0	126	33	33	0	33	1.58
49381293--49381327	14	2.4	15	90	4	54	71	2	0	25	1.00
49381323--49381424	30	3.4	31	83	5	122	29	22	3	44	1.71
49381782--49381827	10	4.6	10	80	0	56	63	0	34	2	1.07
49381779--49381845	7	10.0	7	75	12	52	68	0	29	1	0.98
49381800--49381826	13	2.1	13	100	0	54	62	0	37	0	0.95
49381782--49381850	20	3.5	20	76	7	61	69	0	28	1	0.97
49381816--49381850	18	1.9	18	88	11	54	80	0	20	0	0.72
49381968--49382019	23	2.3	23	96	0	95	65	7	26	0	1.20
49382128--49382182	9	6.8	8	76	19	51	83	1	14	0	0.73
49382130--49382171	14	2.9	14	89	10	59	83	0	16	0	0.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49382127--49382185	16	3.7	15	82	8	73	81	1	16	0	0.78
49382130--49382172	8	5.6	8	91	2	63	83	0	16	0	0.64
49382310--49382368	6	10.2	6	82	12	54	28	0	1	69	0.98
49382330--49382367	16	2.3	17	86	4	51	23	0	2	73	0.95
49382520--49383038	17	29.8	18	71	13	281	33	11	11	43	1.77
49382531--49382584	16	3.2	16	75	14	56	35	14	9	40	1.78
49382621--49382704	38	2.3	38	83	4	109	36	15	9	38	1.80
49382577--49382779	74	2.8	73	80	8	209	33	12	10	42	1.77
49382655--49382761	54	1.9	55	83	7	137	36	13	11	39	1.80
49382675--49383039	54	7.1	49	70	17	167	34	10	12	42	1.77
49395139--49396134	44	22.6	45	71	12	554	27	21	20	29	1.98
49395139--49396135	90	11.3	89	73	10	721	27	21	20	29	1.98
49395068--49396138	175	6.1	175	88	3	1485	27	21	20	30	1.98
49395068--49396135	349	3.0	349	89	2	1527	27	21	20	30	1.98
49397330--49397381	13	3.9	14	90	7	81	15	17	0	67	1.24
49397330--49397381	7	7.7	7	87	8	81	15	17	0	67	1.24
49397330--49397381	20	2.6	20	96	0	95	15	17	0	67	1.24
49398369--49398430	6	10.7	6	80	13	58	14	4	9	70	1.29
49398322--49398441	46	2.6	46	78	10	113	10	10	7	71	1.30
49404974--49405245	136	2.0	136	99	0	535	25	13	17	44	1.84
49406161--49406190	3	10.0	3	100	0	60	33	0	0	66	0.92
49411138--49411177	18	2.2	19	86	4	55	17	7	5	70	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49417184--49417266	24	3.4	25	77	9	82	19	27	21	31	1.97
49417313--49417383	25	2.8	25	78	6	63	19	25	22	32	1.98
49417764--49417810	23	2.0	23	87	0	67	38	19	4	38	1.71
49421053--49421916	129	6.7	129	91	0	1322	24	22	19	32	1.97
49421879--49422174	44	6.7	44	89	0	414	23	25	21	29	1.99
49423433--49423474	21	2.0	22	85	4	59	14	11	0	73	1.09
49423434--49423465	14	2.2	15	94	5	57	12	9	0	78	0.97
49424347--49424415	6	11.7	6	83	9	70	13	7	10	69	1.36
49424345--49424424	23	3.4	23	75	1	79	13	6	10	70	1.34
49436147--49436186	18	2.2	19	86	4	55	17	7	5	70	1.30

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199