genome.fa.s20.2.7.7.80.10.50.1000.161.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Length:  58101237

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  161  of  199  ( 23844 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47148024--47148128	46	2.3	46	82	8	124	49	30	10	9	1.69
47149729--47149777	2	24.5	2	91	0	71	48	0	51	0	1.00
47149720--47149773	16	3.2	16	76	5	54	51	0	48	0	1.00
47151472--47151703	40	5.8	40	92	1	324	28	28	20	23	1.99
47159432--47159582	27	5.6	27	81	4	169	27	15	27	30	1.96
47159432--47159582	55	2.8	55	80	4	171	27	15	27	30	1.96
47159433--47159582	82	1.8	81	87	4	221	26	15	27	30	1.96
47175247--47175290	20	2.2	20	88	4	63	4	22	9	63	1.42
47178790--47178820	10	3.1	10	90	0	53	35	0	0	64	0.94
47178850--47178874	10	2.5	10	100	0	50	36	8	8	48	1.62
47179655--47179704	25	2.0	25	84	0	64	18	10	16	56	1.67
47180925--47180965	19	2.2	19	90	0	64	48	9	0	41	1.36
47186424--47186967	44	12.6	44	70	10	331	25	21	22	30	1.99
47186356--47186964	129	4.7	129	90	0	934	25	21	22	30	1.98
47186597--47187052	214	2.1	212	82	5	535	26	20	23	30	1.98
47186356--47187052	85	8.1	85	71	10	409	26	20	22	30	1.98
47186295--47187008	258	2.8	254	85	5	939	26	21	21	30	1.98
47187100--47188418	50	26.9	50	65	5	308	26	22	20	30	1.98
47187075--47188446	100	14.0	100	82	4	1461	26	22	20	30	1.98
47187075--47188446	487	2.8	487	91	2	2079	26	22	20	30	1.98
47188022--47188396	187	2.0	188	86	1	529	27	21	19	30	1.98
47189489--47189513	10	2.5	10	100	0	50	28	0	0	72	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47192202--47192255	24	2.2	25	86	3	74	46	5	22	25	1.73
47198489--47198552	25	2.6	25	74	0	65	32	25	14	28	1.94
47211048--47211086	17	2.3	17	86	8	53	64	0	0	35	0.94
47211500--47211561	30	2.1	30	96	0	115	58	8	3	30	1.43
47215591--47215649	12	5.1	12	74	13	61	30	1	1	66	1.12
47215591--47215652	23	2.7	23	80	14	74	30	3	1	64	1.19
47215756--47215780	13	1.9	13	100	0	50	40	0	4	56	1.18
47215798--47215857	26	2.3	26	83	13	72	28	5	5	61	1.38
47215795--47215857	25	2.5	26	82	12	78	28	4	4	61	1.36
47222177--47223177	132	7.6	132	89	1	1386	28	18	23	29	1.98
47222199--47222804	44	13.8	44	68	11	287	28	17	24	29	1.97
47224636--47224682	12	3.9	12	82	0	58	27	2	0	70	0.99
47224828--47224887	26	2.3	26	83	13	72	28	5	5	61	1.38
47224825--47224887	25	2.5	26	82	12	78	28	4	4	61	1.36
47228946--47228982	18	2.1	18	94	0	65	18	18	18	43	1.89
47229575--47229617	22	1.9	22	85	4	59	62	18	2	16	1.43
47230855--47230886	17	1.9	17	93	6	57	81	0	18	0	0.70
47231831--47232204	45	8.4	45	78	10	349	26	15	27	31	1.96
47231887--47232214	134	2.4	134	81	9	350	25	16	25	32	1.96
47232201--47232743	44	12.8	40	70	13	209	31	19	20	28	1.97
47232199--47232832	85	7.4	85	73	10	459	32	19	20	28	1.97
47232245--47232834	129	4.6	129	89	2	853	32	19	20	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47232245--47232834	257	2.3	257	89	1	876	32	19	20	27	1.97
47232898--47233046	44	3.2	43	65	15	109	32	16	21	29	1.95
47232245--47232908	257	2.6	255	84	4	850	32	19	20	28	1.96
47232939--47233097	51	3.3	51	65	15	145	30	18	19	31	1.96
47232888--47233110	95	2.3	95	94	0	383	31	17	20	30	1.95
47232888--47233141	95	2.7	95	89	3	325	31	18	20	30	1.96
47233079--47233169	44	2.1	44	87	4	130	31	21	20	25	1.98
47234853--47234892	9	4.6	9	84	6	55	22	2	7	67	1.28
47234862--47234895	17	2.0	17	100	0	68	17	5	5	70	1.28
47238367--47238391	13	1.9	13	100	0	50	40	0	36	24	1.55
47249509--47249537	15	1.9	15	100	0	58	82	0	0	17	0.66
47249942--47250029	44	2.0	44	90	0	140	30	21	21	26	1.98
47249816--47250238	142	3.0	142	91	0	666	33	17	20	28	1.95
47250084--47250177	44	2.1	44	88	0	134	29	19	22	28	1.98
47250099--47250210	44	2.5	44	78	5	111	31	18	19	30	1.96
47255445--47255486	15	2.8	15	82	7	50	38	0	2	59	1.10
47255425--47255501	30	2.5	31	78	16	79	41	1	3	53	1.27
47257588--47257633	22	2.1	21	84	4	56	36	8	2	52	1.45
47262006--47262034	12	2.5	12	94	5	51	41	0	34	24	1.55
47266293--47266336	20	2.1	21	83	8	54	22	0	4	72	1.02
47272651--47272702	17	3.1	16	74	20	52	23	3	0	73	1.00
47272836--47272925	44	2.0	44	97	0	171	26	21	22	30	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47273765--47273798	10	3.3	10	88	8	50	85	0	11	2	0.71
47280920--47281058	29	4.7	29	71	7	118	23	10	28	38	1.87
47280918--47281058	59	2.4	59	80	3	167	23	9	27	39	1.86
47280920--47281084	30	5.6	30	69	15	119	21	10	27	40	1.86
47291811--47291847	18	2.1	18	94	0	65	72	0	2	24	0.97
47311472--47311754	152	1.9	152	87	1	424	25	22	18	33	1.97
47315053--47315095	23	2.0	21	81	9	50	44	6	2	46	1.43
47318529--47318572	18	2.2	20	88	11	65	75	4	2	18	1.09
47323338--47323367	5	6.0	5	100	0	60	80	0	0	20	0.72
47324330--47324369	21	1.9	21	94	0	71	12	25	15	47	1.80
47326081--47326289	105	2.0	105	98	0	400	33	21	9	35	1.85
47334830--47334989	33	4.8	33	73	11	103	31	15	23	30	1.95
47334794--47334987	101	1.9	101	87	0	280	31	14	23	29	1.95
47340518--47340548	9	3.4	9	90	0	53	38	22	12	25	1.90
47343607--47343673	29	2.3	29	81	0	80	34	22	22	20	1.97
47346258--47346305	4	12.0	4	100	0	96	25	0	25	50	1.50
47347272--47347438	42	4.0	42	82	2	194	32	20	18	27	1.96
47347278--47347454	84	2.1	83	87	1	246	33	20	18	27	1.96
47354472--47354660	42	4.5	42	81	7	174	30	20	22	26	1.98
47362417--47363482	539	2.0	539	89	0	1623	23	22	14	38	1.92
47375686--47375757	32	2.2	32	85	7	92	22	13	12	51	1.75
47375835--47375870	12	2.8	13	87	8	56	16	5	0	77	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47386871--47387135	40	6.7	40	83	5	268	25	27	21	25	1.99
47386873--47387135	120	2.2	119	82	4	298	25	27	21	25	1.99
47387067--47387144	40	1.9	41	82	10	97	26	28	20	24	1.99
47394863--47395127	40	6.7	40	84	5	277	26	27	21	25	1.99
47394830--47395127	80	3.7	80	78	9	254	25	27	21	26	1.99
47395059--47395136	40	1.9	41	82	10	97	26	28	20	24	1.99
47399921--47400000	22	3.3	22	66	21	61	48	1	2	47	1.23
47399921--47400022	28	3.8	28	65	18	81	50	0	1	46	1.19
47400532--47400559	3	9.3	3	100	0	56	67	0	0	32	0.91
47411267--47411393	41	3.0	43	80	9	161	25	17	27	29	1.97
47424890--47424944	27	2.0	27	92	0	92	34	9	21	34	1.85
47428612--47428669	3	19.3	3	74	0	53	32	3	5	58	1.37
47433331--47433372	18	2.2	20	91	8	70	78	7	0	14	0.95
47433326--47433372	24	2.0	23	88	12	69	76	8	0	14	1.01
47433380--47433410	15	2.1	15	94	5	55	83	0	16	0	0.64
47435617--47435914	44	6.8	44	91	2	449	29	17	24	28	1.97
47435897--47436994	88	12.5	88	87	2	1497	28	20	24	27	1.99
47436818--47436960	44	3.2	44	67	3	126	24	23	23	27	2.00
47452560--47452678	63	1.9	61	84	3	157	43	14	8	33	1.75
47455179--47455210	16	2.1	16	94	5	57	43	18	0	37	1.51
47464520--47466314	914	2.0	917	94	0	3159	28	21	19	29	1.98
47469155--47469394	102	2.4	100	92	2	392	22	29	21	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47469114--47469398	152	1.9	150	83	6	369	22	29	21	27	1.99
47469114--47469398	50	5.7	50	83	5	344	22	29	21	27	1.99
47474309--47474445	25	6.0	23	67	23	85	22	22	15	39	1.91
47476238--47476364	50	2.5	50	85	8	152	26	15	26	30	1.96
47476370--47476464	45	2.1	45	90	0	154	25	20	24	30	1.98
47486187--47486211	12	2.1	12	100	0	50	60	0	24	16	1.36
47491132--47491261	28	4.7	28	72	6	113	35	13	21	29	1.92
47493524--47493712	37	5.1	36	81	5	177	37	28	13	20	1.91
47493536--47493712	74	2.4	74	81	1	221	36	28	14	20	1.91
47494647--47494824	86	2.1	86	95	1	322	28	10	20	39	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199