genome.fa.s20.2.7.7.80.10.50.1000.178.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Length:  58101237

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  178  of  199  ( 23844 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51809464--51809543	34	2.4	34	91	0	133	28	3	22	45	1.70
51809644--51810054	9	47.9	9	68	13	154	29	4	19	45	1.70
51809643--51809933	34	8.4	34	75	9	178	29	4	19	46	1.70
51809351--51809723	189	2.0	182	93	4	642	31	10	19	38	1.85
51809710--51809954	37	7.0	37	78	9	160	30	4	17	46	1.69
51809644--51810004	172	2.1	172	94	1	641	29	4	19	46	1.70
51809987--51810054	25	2.7	25	83	0	82	30	1	23	44	1.63
51809983--51810054	16	4.4	16	70	19	58	30	1	23	44	1.62
51810051--51810828	212	3.7	212	96	0	1421	42	9	9	38	1.70
51819766--51820032	40	6.7	40	97	0	480	29	20	27	22	1.98
51822139--51822226	36	2.5	34	75	12	88	42	7	5	44	1.57
51826364--51826439	9	8.4	9	86	0	107	38	26	11	23	1.89
51826364--51826439	18	4.2	18	96	0	143	38	26	11	23	1.89
51833066--51833095	15	2.0	15	93	0	51	30	6	16	46	1.73
51835849--51835891	19	2.2	20	87	4	61	37	0	2	60	1.10
51837264--51837289	3	8.7	3	100	0	52	30	0	0	69	0.89
51837864--51837922	29	2.0	29	96	0	109	37	8	0	54	1.31
51840411--51840458	5	9.4	5	84	8	53	20	25	14	39	1.91
51842744--51842944	24	8.7	23	69	11	106	46	21	5	26	1.73
51842675--51842986	69	4.5	69	92	0	489	45	21	7	26	1.77
51842857--51842956	22	4.4	23	73	5	87	44	20	11	25	1.84
51843111--51843473	69	5.3	69	97	0	690	45	21	8	24	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51843128--51843469	47	7.4	45	68	17	154	45	21	7	25	1.79
51844233--51844389	41	3.8	41	87	0	215	33	27	19	19	1.96
51844766--51844824	28	2.0	30	81	15	70	42	11	1	44	1.51
51850873--51850962	44	2.0	44	97	0	171	15	34	0	50	1.45
51852598--51852678	35	2.3	35	82	2	92	24	20	23	30	1.99
51853546--51853632	25	3.4	25	78	10	81	68	2	26	2	1.13
51860688--51860968	44	6.1	44	67	11	159	33	15	19	30	1.93
51860728--51860960	95	2.5	95	87	1	351	33	14	19	31	1.92
51860728--51860992	95	2.8	95	81	4	241	33	15	19	30	1.93
51862553--51862689	3	42.7	3	68	22	66	29	6	2	60	1.37
51868342--51868387	23	2.1	22	84	8	58	30	13	13	43	1.81
51875085--51875137	22	2.5	21	73	11	54	41	5	11	41	1.64
51879050--51879090	21	2.0	21	90	0	64	29	21	29	19	1.98
51881918--51881945	14	2.0	14	100	0	56	21	7	21	50	1.72
51882106--51882206	38	2.7	38	89	3	159	4	25	10	58	1.52
51884303--51884337	18	2.0	17	88	5	52	45	0	0	54	0.99
51884212--51884840	120	5.2	120	98	0	1177	42	1	6	49	1.39
51884436--51884482	16	3.0	16	78	12	53	46	0	2	51	1.13
51884556--51884602	16	3.0	16	78	12	53	46	0	2	51	1.13
51885046--51885099	16	3.4	16	89	0	81	29	33	1	35	1.69
51891687--51892480	132	6.0	132	94	0	1378	27	26	19	26	1.99
51893248--51893285	19	2.0	19	89	0	58	28	7	0	63	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51894250--51894300	14	3.6	14	84	5	66	33	0	1	64	1.05
51895390--51895439	24	2.1	24	85	7	66	46	4	32	18	1.67
51895689--51896019	75	4.5	74	83	7	376	41	9	8	41	1.67
51895689--51896019	72	4.5	73	81	10	358	41	9	8	41	1.67
51896958--51896999	15	2.7	15	79	13	50	54	0	11	33	1.37
51898255--51898301	25	1.9	24	95	4	85	46	23	8	21	1.78
51900510--51900600	45	2.0	45	97	0	173	41	13	16	28	1.86
51907436--51907487	23	2.3	23	96	3	97	30	13	3	51	1.58
51911659--51911714	22	2.5	22	97	0	103	35	23	21	19	1.96
51912906--51917545	918	5.0	915	79	7	4380	29	17	16	36	1.92
51926169--51926205	18	2.0	18	89	5	56	16	35	5	43	1.71
51928624--51928682	10	5.6	11	77	18	72	45	0	0	54	0.99
51928621--51928677	14	4.1	15	74	17	61	43	0	0	56	0.99
51934459--51934495	17	2.2	18	85	9	51	45	0	0	54	1.00
51934918--51935016	44	2.2	46	84	10	141	32	3	25	39	1.71
51934921--51935031	44	2.6	41	73	21	111	34	4	24	36	1.76
51935198--51935227	15	1.9	16	93	6	53	50	6	0	43	1.28
51935190--51936128	91	9.6	100	82	11	404	48	4	2	44	1.37
51935302--51935487	61	3.1	60	71	20	190	51	4	2	41	1.36
51935292--51935575	118	2.4	117	94	1	487	50	3	2	43	1.32
51935510--51935544	18	1.9	18	100	0	70	62	0	0	37	0.95
51935158--51935662	220	2.4	209	82	11	609	50	3	2	43	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51935487--51936111	179	3.5	178	91	3	974	46	4	3	45	1.38
51935664--51935717	15	3.9	15	72	16	53	51	1	0	46	1.11
51935487--51936111	91	7.0	91	93	3	961	46	4	3	45	1.38
51936586--51936676	25	3.6	25	81	8	103	61	14	7	16	1.55
51952129--51952206	6	12.5	6	75	12	50	15	2	6	75	1.11
51952140--51952206	25	2.6	25	77	9	64	16	1	7	74	1.11
51954684--51954710	13	2.1	13	100	0	54	29	7	22	40	1.81
51958561--51958658	42	2.3	42	87	3	135	31	20	18	29	1.96
51960433--51960488	21	2.8	20	71	10	51	41	5	16	37	1.71
51975913--51975980	35	1.9	35	100	0	136	44	11	8	35	1.72
51979072--51979108	19	1.9	19	88	0	56	10	2	8	78	1.06
51986803--51987359	129	4.3	129	93	1	938	31	19	23	25	1.98
51986803--51987399	257	2.3	258	89	3	925	31	18	24	25	1.97
51987353--51987640	44	6.6	43	70	7	181	28	18	26	27	1.98
51989082--51989107	11	2.4	11	100	0	52	46	0	0	53	1.00
51995623--51995687	22	3.0	22	79	0	67	44	18	20	16	1.87
51995704--51995786	32	2.6	32	84	0	112	37	19	21	21	1.94
51995792--51995841	26	1.9	26	95	0	91	36	26	20	18	1.95
51995832--51995893	27	2.3	26	76	15	65	32	19	25	22	1.97
51995969--51996114	24	6.1	24	86	0	184	45	22	6	25	1.77
51996132--51996272	27	5.3	26	78	9	99	26	21	17	34	1.96
51996151--51996275	27	4.6	27	82	0	142	27	21	17	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51996129--51996275	54	2.7	54	73	3	145	27	21	17	34	1.95
51996626--51996667	17	2.5	17	92	0	75	28	45	19	7	1.76
51996626--51996666	9	4.8	9	79	8	50	26	46	19	7	1.76
52002835--52002949	33	3.4	33	86	2	149	40	37	7	13	1.74
52003873--52003914	21	2.0	21	90	9	68	23	9	4	61	1.45
52006025--52006072	22	2.1	23	85	11	64	29	4	27	39	1.75
52015953--52015993	21	2.1	19	86	9	55	9	17	2	70	1.25
52018892--52018954	26	2.4	26	78	0	72	74	1	3	20	1.04
52018916--52018954	20	1.9	21	89	5	62	74	2	0	23	0.94
52018910--52018954	6	7.2	6	80	9	54	75	2	0	22	0.91
52032479--52032597	38	3.0	38	75	12	141	52	3	6	36	1.44
52034465--52034604	69	2.0	69	98	0	271	26	8	22	42	1.82
52035432--52035497	21	3.2	20	71	12	62	40	0	3	56	1.15
52036221--52036260	5	8.0	5	100	0	80	60	0	0	40	0.97
52036332--52036400	36	1.9	36	82	11	88	43	7	4	44	1.51
52043477--52043600	43	2.9	43	91	0	194	25	18	28	27	1.98
52046031--52046103	36	2.0	36	91	0	119	32	10	20	35	1.88
52047496--52047539	21	2.1	21	100	0	88	38	9	13	38	1.77
52047495--52047550	21	2.8	19	87	10	85	37	8	16	37	1.80
52047508--52047573	23	3.0	23	82	12	77	37	6	16	39	1.74
52047539--52047583	23	2.0	23	86	4	65	33	4	15	46	1.66
52048183--52048249	4	17.0	4	80	9	57	26	0	2	70	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52048183--52048247	25	2.5	26	78	7	80	26	0	3	70	1.01
52053360--52053509	45	3.2	45	64	20	119	38	13	6	42	1.69
52053340--52053547	94	2.4	84	81	18	282	36	12	5	45	1.65
52053351--52053532	94	1.9	94	100	0	364	36	12	6	44	1.69
52057968--52058041	36	2.1	36	100	0	148	37	8	10	43	1.69
52058602--52058656	26	2.2	26	83	9	69	47	1	0	50	1.11
52058670--52058715	18	2.6	18	86	10	67	45	0	2	52	1.13
52058719--52058767	21	2.3	21	85	0	62	51	0	2	46	1.12
52061903--52061963	6	10.2	6	94	0	86	9	0	22	67	1.20
52061903--52061963	12	5.1	12	95	0	95	9	0	22	67	1.20

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199