genome.fa.s20.2.7.7.80.10.50.1000.191.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Length:  58101237

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  191  of  199  ( 23844 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55330527--55330578	14	3.8	14	79	2	61	51	15	0	32	1.43
55330527--55330587	14	4.4	14	77	4	52	52	16	0	31	1.44
55330534--55330615	36	2.3	36	78	15	91	57	14	0	28	1.38
55330575--55330749	44	4.1	44	68	10	119	53	22	0	24	1.50
55330671--55330743	36	2.1	34	82	10	85	53	21	0	24	1.46
55330540--55330750	21	10.2	21	66	19	88	52	21	0	25	1.51
55330725--55330779	15	3.7	14	86	11	74	54	20	0	25	1.44
55330833--55330881	20	2.5	20	83	3	64	48	30	0	20	1.50
55330856--55330913	27	2.2	25	87	6	80	43	31	0	25	1.55
55338407--55338596	99	1.9	99	88	2	283	39	20	17	22	1.92
55349201--55349277	39	2.0	39	84	5	102	38	5	9	46	1.58
55350349--55350445	49	2.0	49	87	2	142	18	15	22	43	1.88
55355456--55355552	49	2.0	48	89	2	149	20	15	22	41	1.90
55355817--55355859	2	21.5	2	100	0	86	51	0	48	0	1.00
55356182--55356207	11	2.4	11	100	0	52	38	7	0	53	1.30
55359211--55359278	27	2.5	27	80	0	82	19	22	19	39	1.92
55360013--55360069	20	2.8	20	92	5	89	36	8	24	29	1.86
55360011--55360077	20	3.3	20	87	4	82	35	10	23	29	1.89
55363473--55363526	19	2.9	19	81	8	58	38	0	0	61	0.96
55363492--55363532	20	2.1	19	86	4	55	36	0	2	60	1.10
55363492--55363532	19	2.1	20	82	13	50	36	0	2	60	1.10
55377465--55377540	27	3.0	25	78	12	84	55	5	3	35	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55377482--55377556	29	2.6	29	79	12	82	57	4	2	36	1.32
55377709--55377743	17	2.1	17	94	0	61	51	0	11	37	1.38
55378225--55378271	23	2.0	24	87	4	69	38	17	6	38	1.75
55378263--55378288	12	2.2	12	100	0	52	42	15	7	34	1.75
55381761--55381819	26	2.3	26	81	0	64	40	15	13	30	1.86
55384523--55384564	13	3.1	14	83	13	52	2	16	0	80	0.81
55384707--55384750	23	1.9	23	90	0	70	29	27	6	36	1.83
55387579--55387627	23	2.1	24	84	3	64	46	4	18	30	1.67
55387817--55387856	21	1.9	21	84	0	53	65	7	5	22	1.38
55392299--55392446	57	2.5	57	83	9	181	31	20	25	22	1.98
55392569--55392699	67	2.0	67	93	0	226	20	16	34	28	1.95
55394243--55394364	49	2.4	49	90	2	181	23	13	30	32	1.93
55396722--55396748	13	2.1	13	100	0	54	29	0	22	48	1.51
55397897--55397992	31	3.1	31	95	3	174	31	9	13	45	1.75
55398621--55398705	41	2.1	41	100	0	170	41	2	22	34	1.67
55400311--55400364	18	2.8	19	86	13	67	37	0	0	62	0.95
55401717--55401773	29	1.9	30	85	3	80	61	7	0	31	1.23
55403457--55403542	40	2.1	40	80	6	93	37	22	18	22	1.94
55403474--55403609	40	3.4	38	79	7	139	39	22	19	17	1.92
55403657--55403925	41	6.6	41	83	6	350	23	22	23	30	1.99
55403657--55403925	123	2.2	122	87	3	389	23	22	23	30	1.99
55405170--55405416	134	1.8	134	93	2	404	49	6	8	35	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55408877--55408930	24	2.3	24	80	3	65	20	14	18	46	1.84
55410128--55410438	42	7.3	42	92	2	462	19	18	32	29	1.96
55411647--55411819	14	12.4	14	73	0	58	33	11	21	33	1.89
55411648--55411795	28	5.3	28	72	3	100	32	11	21	34	1.89
55411641--55411819	42	4.3	42	75	5	137	33	11	21	33	1.89
55414131--55414181	20	2.6	19	85	11	68	33	11	0	54	1.37
55415933--55416024	44	2.1	44	91	0	148	32	14	15	38	1.87
55418321--55418678	140	2.6	138	76	7	352	31	23	6	38	1.80
55418273--55418638	139	2.6	138	78	5	328	33	23	6	37	1.80
55422843--55422876	17	1.9	18	88	5	52	11	26	0	61	1.30
55425327--55425454	65	2.0	65	92	0	211	33	16	16	33	1.91
55427876--55427995	49	2.4	49	87	0	159	18	15	21	45	1.86
55427903--55428015	49	2.3	49	81	0	136	16	16	23	42	1.88
55428506--55428563	27	2.0	30	83	9	77	41	5	8	44	1.57
55433305--55433729	210	2.0	210	98	0	814	39	17	10	32	1.84
55434444--55434519	26	2.9	26	78	7	82	30	15	10	43	1.81
55448518--55448573	21	2.7	19	79	15	58	51	7	1	39	1.40
55455057--55455121	27	2.4	27	80	14	73	20	23	23	33	1.97
55455075--55455153	27	3.0	26	79	5	77	21	24	21	32	1.98
55455201--55455332	32	4.1	32	76	0	102	21	19	21	37	1.94
55455359--55455405	22	2.1	22	84	0	58	21	14	14	48	1.80
55460763--55460938	54	3.3	53	85	6	228	35	22	13	28	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55460914--55461056	59	2.6	55	83	7	175	25	20	24	29	1.99
55460914--55461074	52	2.9	54	75	9	148	29	19	22	28	1.98
55465250--55465292	20	2.2	20	86	0	59	37	13	39	9	1.78
55466117--55466247	63	2.1	63	88	0	190	24	26	24	24	2.00
55477680--55478312	316	2.0	316	95	0	1140	29	26	17	26	1.97
55478900--55478970	23	2.8	24	81	14	72	76	1	18	4	1.03
55478927--55478986	19	3.0	20	80	14	70	76	0	20	3	0.92
55487289--55487506	85	2.6	85	83	4	253	33	29	14	22	1.94
55487293--55487506	43	5.0	42	82	4	207	33	29	14	21	1.94
55487636--55487669	11	2.8	13	91	8	54	44	11	8	35	1.72
55488778--55488857	27	2.6	32	84	11	98	16	23	27	32	1.96
55488737--55489003	103	2.6	103	93	1	446	21	19	25	32	1.97
55488881--55489041	33	4.7	33	75	21	129	21	20	26	31	1.98
55496046--55496111	9	7.6	9	78	10	66	33	0	18	48	1.48
55496019--55496102	36	2.4	34	96	4	150	34	0	16	48	1.47
55496165--55496191	13	2.1	13	100	0	54	37	11	0	51	1.37
55498547--55498590	22	2.0	22	82	8	54	59	9	2	29	1.41
55499919--55499980	23	2.6	24	89	5	99	14	25	24	35	1.93
55501290--55501385	31	3.2	31	61	19	76	34	14	10	40	1.80
55501295--55501414	59	2.0	59	98	0	231	33	15	10	40	1.81
55514264--55514337	27	2.8	27	84	10	107	47	9	12	31	1.73
55527410--55527446	6	6.3	6	93	6	67	16	0	0	83	0.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55527410--55527450	11	3.7	11	90	9	66	17	0	0	82	0.66
55527410--55527450	17	2.5	16	92	4	64	17	0	0	82	0.66
55537323--55537362	13	3.1	13	89	7	55	50	7	5	37	1.53
55537758--55537794	19	2.0	19	85	15	51	64	0	0	35	0.94
55540178--55540300	40	3.0	39	87	8	165	22	23	21	31	1.98
55540182--55540321	41	3.4	41	81	8	117	27	22	20	30	1.98
55549314--55549395	42	2.0	42	87	4	121	18	32	26	21	1.97
55551934--55552051	45	2.5	46	84	6	139	38	3	4	54	1.37
55562826--55563233	77	5.3	76	82	2	431	41	15	18	24	1.89
55562839--55563034	40	5.1	39	67	12	118	41	13	18	26	1.88
55571884--55571946	21	3.0	21	83	4	65	57	3	1	38	1.24
55571889--55571958	10	6.5	11	77	9	56	57	2	2	37	1.29
55571889--55571960	11	6.8	10	79	6	54	56	2	2	37	1.28
55572010--55572076	31	2.2	30	81	7	73	56	1	5	35	1.33
55572533--55572574	16	2.6	17	85	7	61	38	7	30	23	1.82
55572786--55573024	120	2.0	118	96	1	442	51	4	0	42	1.28
55572778--55572960	59	3.0	60	71	11	194	53	3	0	42	1.23
55573311--55573348	15	2.5	15	91	0	67	31	18	21	28	1.97
55574017--55574120	49	2.1	49	92	0	172	50	9	7	32	1.64
55577618--55577671	19	2.8	19	94	0	99	37	16	9	37	1.81
55577595--55577671	38	1.9	40	87	10	113	38	16	7	36	1.78
55578221--55578598	44	8.7	45	73	12	204	27	21	21	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55578312--55578600	128	2.3	128	93	0	479	28	21	20	29	1.98
55578976--55579084	44	2.5	44	84	11	143	28	22	21	28	1.99
55579117--55579694	44	13.3	44	58	8	115	21	24	27	26	1.99
55579084--55579743	88	7.6	88	87	1	936	20	23	28	27	1.99
55579084--55579743	173	3.8	176	87	2	936	20	23	28	27	1.99
55579084--55579743	261	2.5	261	90	1	1045	20	23	28	27	1.99
55586102--55586160	23	2.6	22	76	7	64	54	8	3	33	1.48
55586647--55586742	19	4.6	22	82	11	71	40	16	6	36	1.74
55586683--55586755	19	3.8	19	96	0	137	36	16	9	36	1.81
55587319--55587381	30	2.1	29	82	8	74	44	3	6	46	1.45

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199