genome.fa.s20.2.7.7.80.10.50.1000.171.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Length:  58101237

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  171  of  199  ( 23844 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50001379--50001412	17	2.0	18	88	11	54	47	0	11	41	1.40
50003317--50003765	230	2.0	219	88	5	666	33	11	16	38	1.85
50004825--50004940	58	2.0	59	81	8	139	29	18	5	47	1.70
50006255--50006345	41	2.2	41	86	5	130	26	24	21	27	1.99
50006469--50006928	230	2.0	230	96	0	839	32	11	17	38	1.86
50007985--50008094	57	1.9	59	81	7	136	30	20	4	44	1.71
50009101--50009203	41	2.5	41	90	4	163	23	24	23	29	1.99
50009139--50009443	70	4.4	69	83	2	319	23	20	21	34	1.96
50009142--50009449	140	2.2	139	83	1	366	23	19	21	34	1.96
50013849--50013891	3	14.3	3	100	0	86	67	0	0	32	0.91
50026303--50026637	54	6.2	54	79	5	320	47	19	15	17	1.82
50026303--50026636	27	12.4	27	80	3	271	47	19	15	17	1.82
50026303--50026636	81	4.1	80	78	3	321	47	19	15	17	1.82
50032355--50032442	27	3.3	26	78	12	88	45	17	17	20	1.86
50032819--50032878	28	2.2	27	87	3	84	23	25	25	26	2.00
50035222--50035263	21	2.0	21	90	0	66	26	16	26	30	1.97
50039583--50039607	13	1.9	13	100	0	50	64	4	0	32	1.12
50042092--50042145	28	2.0	28	86	10	78	44	5	3	46	1.44
50042174--50042224	25	2.0	26	84	3	68	35	7	5	50	1.55
50043546--50043590	23	1.9	24	86	4	65	26	51	2	20	1.59
50047648--50047710	26	2.4	27	94	2	110	41	6	0	52	1.27
50047711--50047780	27	2.6	27	83	0	86	37	20	27	15	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50047983--50048043	18	3.5	18	78	15	74	44	9	0	45	1.37
50047997--50048046	15	3.1	15	82	8	55	44	12	0	44	1.41
50048054--50048125	23	3.2	23	65	31	64	43	0	15	41	1.46
50048052--50048140	45	2.0	45	100	0	178	43	0	15	40	1.47
50048387--50048659	81	3.4	80	78	6	273	21	20	24	32	1.98
50048389--50048659	41	6.7	41	75	8	225	22	20	24	32	1.97
50048762--50049145	189	2.0	186	94	1	678	48	4	8	38	1.54
50049304--50049547	133	1.8	132	87	0	362	29	0	27	42	1.61
50049423--50049460	14	2.7	14	88	8	51	23	0	42	34	1.55
50049728--50049816	28	3.1	28	70	22	85	43	0	7	48	1.32
50050845--50050876	16	2.0	16	93	0	55	6	0	21	71	1.07
50050886--50050948	26	2.4	27	91	2	110	49	0	9	41	1.35
50055317--50055401	39	2.1	43	82	12	108	58	3	5	31	1.39
50057042--50057201	44	3.6	44	75	5	117	26	25	20	28	1.99
50057083--50057202	44	2.7	44	76	0	132	22	25	22	30	1.99
50078533--50078591	25	2.4	25	79	0	73	25	18	11	44	1.84
50095887--50096237	45	7.8	45	83	1	409	30	19	24	26	1.98
50095889--50096237	90	3.9	90	87	0	484	30	19	24	26	1.98
50095886--50096363	135	3.6	135	83	4	492	30	18	23	27	1.98
50095887--50096363	45	10.8	45	77	5	398	30	18	23	27	1.98
50097648--50097691	23	2.0	22	86	8	63	20	2	34	43	1.64
50101552--50101584	12	2.8	12	82	17	50	15	12	48	24	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50113950--50114132	98	1.9	97	90	3	296	31	24	17	26	1.97
50115354--50115387	16	2.1	16	88	0	50	17	17	23	41	1.90
50116726--50116759	16	2.1	17	88	5	52	44	11	14	29	1.81
50118596--50118629	5	7.0	5	86	6	52	79	0	20	0	0.73
50118595--50118631	19	1.9	19	100	0	74	78	0	21	0	0.75
50119913--50120715	135	6.2	135	83	8	980	30	15	22	31	1.95
50120474--50120543	31	2.3	31	89	0	104	28	20	18	32	1.96
50119913--50120496	45	13.0	45	87	0	835	30	14	22	32	1.93
50120552--50120612	31	2.0	31	100	0	122	21	22	22	32	1.98
50120583--50120715	45	3.0	45	88	0	194	30	17	22	29	1.96
50120431--50120657	76	3.0	76	92	1	366	27	18	22	32	1.97
50120818--50120934	44	2.7	44	81	2	128	31	17	21	29	1.96
50122367--50122401	5	6.6	5	87	12	52	25	0	0	74	0.82
50122367--50122401	16	2.2	16	90	10	54	25	0	0	74	0.82
50122367--50122401	11	3.3	10	92	8	52	25	0	0	74	0.82
50131027--50131088	13	4.8	13	81	0	79	33	8	22	35	1.84
50131025--50131088	26	2.5	26	86	0	101	32	7	23	35	1.84
50131315--50131374	19	3.1	18	79	15	50	50	1	1	46	1.21
50133144--50133318	72	2.4	73	83	6	248	54	12	6	26	1.61
50133741--50133806	18	3.7	18	97	0	123	39	12	13	34	1.82
50134691--50134743	15	3.6	15	80	14	74	39	0	9	50	1.35
50134686--50134760	29	2.5	30	91	6	116	41	0	10	48	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50134686--50134744	15	4.2	13	76	18	55	40	0	10	49	1.37
50135817--50135858	16	2.8	15	89	10	68	23	7	9	59	1.53
50137867--50137903	19	1.9	19	88	0	56	56	21	21	0	1.42
50137875--50137926	25	2.1	25	92	0	86	51	23	23	1	1.58
50138504--50138800	45	6.6	45	93	1	481	28	21	15	33	1.94
50138504--50138800	136	2.2	136	91	2	483	28	21	15	33	1.94
50141029--50141066	19	2.0	20	89	5	60	55	18	26	0	1.43
50144021--50144080	10	5.8	10	74	14	50	58	0	1	40	1.08
50144094--50144163	34	2.1	33	81	7	79	61	5	4	28	1.38
50146204--50146254	11	4.8	11	79	13	54	37	1	0	60	1.08
50146223--50146256	18	2.0	17	88	11	52	35	0	0	64	0.94
50146654--50146752	49	2.0	49	100	0	198	14	12	32	41	1.82
50146755--50146788	11	3.1	11	95	0	59	29	29	14	26	1.95
50148468--50148526	18	3.3	18	79	9	66	37	1	1	59	1.18
50148452--50148539	43	2.0	43	82	4	106	35	2	3	59	1.27
50148468--50148533	28	2.5	26	87	7	89	36	1	1	60	1.15
50155222--50155275	21	2.6	21	90	0	90	25	7	37	29	1.83
50160493--50160526	16	2.2	15	89	5	50	76	0	0	23	0.79
50160503--50160600	45	2.2	43	78	12	101	59	2	1	37	1.16
50160606--50160653	19	2.5	19	75	0	51	62	0	2	35	1.07
50160834--50160882	18	2.7	18	75	15	55	32	4	2	61	1.26
50163744--50163966	79	2.8	81	82	9	273	25	21	27	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50163744--50163966	39	5.7	40	85	6	262	25	21	27	25	2.00
50163744--50163999	79	3.3	79	80	10	208	26	21	27	24	1.99
50171724--50171907	40	4.6	41	81	12	208	25	22	27	25	2.00
50171724--50171907	79	2.3	81	82	11	222	25	22	27	25	2.00
50171776--50171940	79	2.1	79	82	8	194	26	21	27	24	1.99
50178835--50178875	15	2.7	15	85	10	57	41	4	0	53	1.22
50180735--50180785	22	2.4	22	83	6	61	19	27	39	13	1.90
50187905--50187959	28	2.0	28	85	0	74	43	16	14	25	1.86
50191067--50191100	6	5.7	6	92	0	59	52	44	0	2	1.16
50200334--50200371	16	2.3	17	86	4	51	21	0	21	57	1.40
50202592--50202626	16	2.1	17	89	5	54	40	11	0	48	1.39
50205914--50205989	39	1.9	40	86	7	111	25	21	25	28	1.99
50212948--50213041	44	2.2	44	96	1	172	51	9	11	27	1.69
50216919--50216958	21	2.0	21	90	5	64	42	20	10	27	1.83
50219269--50219458	63	3.0	63	90	0	308	32	13	23	31	1.93
50224071--50224131	31	1.9	32	83	3	79	24	32	26	16	1.96
50225663--50225742	9	7.9	9	72	20	52	75	2	18	3	1.07
50226055--50226113	31	1.9	30	100	0	100	47	22	3	27	1.67
50239254--50239318	25	2.7	23	72	11	58	38	15	27	18	1.91
50254205--50254239	6	5.5	6	87	12	52	80	2	0	17	0.84
50254378--50254434	18	3.1	18	73	16	53	36	5	3	54	1.40
50254411--50254461	21	2.3	22	90	6	77	35	0	7	56	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50254601--50254659	27	2.1	29	87	9	88	25	3	3	67	1.21
50254591--50254668	36	2.1	36	80	2	84	26	3	2	66	1.22
50255649--50256415	294	2.6	293	81	6	836	41	10	12	35	1.78
50255524--50256415	297	3.0	290	79	6	920	41	10	13	34	1.78
50256600--50256645	20	2.4	19	85	3	56	30	2	0	67	1.03
50256878--50256902	3	8.3	3	100	0	50	36	0	0	64	0.94
50260230--50260322	29	3.2	29	79	0	96	23	33	25	17	1.96
50261832--50261946	23	5.2	22	80	7	110	43	37	1	17	1.59
50261855--50261937	43	1.9	43	90	0	130	43	36	2	18	1.63
50265887--50265932	23	2.0	23	100	0	92	34	17	26	21	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199