genome.fa.s20.2.7.7.80.10.50.1000.139.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Length:  58101237

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  139  of  199  ( 23844 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40525751--40525877	51	2.5	50	86	6	159	29	29	14	25	1.95
40529303--40529389	28	3.1	28	86	3	122	32	12	22	32	1.92
40535647--40535754	28	3.9	28	84	7	130	31	14	25	27	1.95
40537460--40537504	22	2.0	21	84	16	56	57	8	0	33	1.30
40537606--40537646	19	2.2	19	100	0	82	56	12	4	26	1.56
40539553--40539730	27	6.6	27	85	3	214	30	28	14	26	1.95
40539574--40539729	82	1.9	81	89	3	242	30	28	14	26	1.95
40547576--40547753	27	6.6	27	84	3	205	30	27	14	27	1.95
40547597--40547752	82	1.9	81	89	3	242	30	27	14	27	1.95
40559023--40559200	27	6.6	27	83	3	178	29	28	15	26	1.96
40559049--40559199	82	1.9	81	88	4	232	28	27	16	27	1.97
40567074--40567251	27	6.6	27	83	3	178	29	28	15	26	1.96
40567100--40567250	82	1.9	81	88	4	232	28	27	16	27	1.97
40574347--40574406	29	2.1	29	96	0	111	26	25	10	38	1.87
40577066--40577099	16	2.2	15	89	5	50	55	2	0	41	1.15
40580777--40580846	25	2.8	25	80	4	79	34	22	18	24	1.96
40581958--40581987	12	2.5	12	94	0	51	16	30	30	23	1.96
40587321--40587360	20	2.0	20	85	14	55	47	10	10	32	1.70
40588744--40588785	21	2.0	20	86	13	59	14	9	23	52	1.71
40589136--40589201	32	2.1	32	91	0	105	37	7	18	36	1.79
40592029--40592080	21	2.5	22	84	6	63	9	23	0	67	1.20
40592041--40592081	21	2.0	21	90	9	66	9	19	0	70	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40595581--40595660	40	2.0	41	82	9	101	27	25	21	26	1.99
40602915--40603021	26	4.1	26	77	0	97	23	18	21	36	1.95
40604144--40604329	50	3.7	50	85	5	223	24	16	27	31	1.96
40606868--40606920	26	2.0	26	92	0	88	22	16	32	28	1.96
40610102--40610237	50	2.7	51	85	3	168	24	18	27	29	1.98
40613371--40613592	40	5.6	40	85	4	227	26	27	21	24	1.99
40622785--40622837	23	2.4	22	76	20	56	9	18	1	69	1.25
40626099--40626321	40	5.6	40	85	3	236	26	27	21	24	1.99
40626253--40626330	40	1.9	41	82	10	97	26	28	21	23	1.99
40644462--40644521	29	2.0	31	83	9	79	40	15	15	30	1.87
40644925--40645007	27	3.1	27	83	0	112	20	18	20	40	1.91
40645622--40645663	12	3.5	12	75	12	50	23	42	0	33	1.55
40656021--40656081	24	2.5	24	73	5	61	65	0	22	11	1.24
40660992--40661024	9	3.7	9	88	11	50	39	12	24	24	1.89
40666594--40666626	17	1.9	18	88	11	52	42	12	0	45	1.41
40666723--40666775	14	3.8	13	80	5	52	37	3	0	58	1.16
40668655--40668723	31	2.3	31	85	7	88	42	21	11	24	1.86
40669599--40669682	3	28.3	3	92	7	145	0	33	0	66	0.92
40674575--40674654	39	2.1	39	97	0	151	22	21	15	41	1.90
40690152--40690392	120	2.0	122	90	3	389	29	17	11	42	1.83
40690673--40690708	17	2.1	17	89	0	54	75	2	0	22	0.94
40690664--40690691	7	4.0	7	100	0	56	71	0	0	28	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40690666--40690711	24	1.9	24	90	0	74	71	2	0	26	0.97
40690801--40690845	19	2.3	20	81	14	58	57	2	0	40	1.11
40691949--40691986	20	1.9	20	88	0	58	34	0	0	65	0.93
40691950--40691993	20	2.2	20	83	0	52	38	0	0	61	0.96
40692052--40692097	20	2.3	20	85	7	58	26	4	6	63	1.38
40695169--40695255	9	9.7	9	72	5	68	26	13	32	27	1.94
40695169--40695255	27	3.2	27	83	0	93	26	13	32	27	1.94
40699937--40700022	36	2.4	36	82	0	118	31	43	8	17	1.78
40702096--40702273	27	6.6	27	83	3	178	29	28	15	26	1.96
40702122--40702272	82	1.9	81	88	4	232	28	27	16	27	1.97
40717717--40717888	95	1.8	95	96	0	317	42	8	11	37	1.71
40717867--40717901	16	2.2	16	100	0	70	54	5	0	40	1.24
40724654--40725443	47	16.6	47	93	2	1292	33	8	28	29	1.87
40724654--40725443	96	8.3	94	94	2	1292	33	8	28	29	1.87
40724654--40725443	143	5.5	143	94	2	1327	33	8	28	29	1.87
40728887--40728991	20	5.2	20	67	4	68	20	32	18	28	1.96
40728851--40728991	40	3.5	40	84	2	169	22	31	17	29	1.96
40729648--40729711	30	2.1	30	82	0	74	28	28	25	18	1.98
40731708--40731953	27	9.1	27	71	13	118	25	14	18	41	1.88
40731721--40731953	54	4.3	54	78	9	201	25	13	19	41	1.88
40731722--40731953	80	2.9	81	83	2	279	25	13	18	41	1.88
40732490--40732588	49	2.0	49	100	0	198	49	2	36	12	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40734844--40734922	37	2.1	37	88	0	113	26	31	17	24	1.97
40735041--40735474	47	9.1	47	92	2	715	29	30	8	31	1.87
40737871--40738186	40	7.9	41	81	5	258	25	27	21	25	2.00
40738043--40738184	39	3.5	40	79	6	128	23	28	21	26	1.99
40738494--40738572	29	2.7	29	84	5	97	27	30	15	26	1.96
40738554--40738680	43	3.0	43	100	0	254	28	35	14	22	1.93
40740726--40741210	47	10.1	47	93	2	790	29	30	8	31	1.87
40740726--40741210	96	5.1	96	94	3	802	29	30	8	31	1.87
40747543--40747644	51	2.0	51	88	3	152	24	16	14	44	1.86
40755520--40755760	50	4.7	51	80	4	202	25	23	28	22	1.99
40755520--40755761	100	2.3	103	79	5	249	26	23	28	22	1.99
40763076--40763373	50	5.9	50	83	4	303	25	21	29	22	1.99
40767353--40767403	26	1.9	27	84	4	68	31	21	17	29	1.96
40776331--40776429	27	3.7	27	89	4	137	41	25	18	15	1.89
40776331--40776445	27	4.3	27	87	0	131	42	23	17	16	1.88
40778061--40778238	27	6.6	26	80	7	169	27	15	27	29	1.96
40778058--40778238	82	2.2	81	81	2	211	27	16	27	29	1.97
40778143--40778249	27	3.9	27	85	1	70	26	14	28	30	1.95
40779737--40779940	28	7.3	28	84	0	255	21	24	23	31	1.98
40779737--40779945	84	2.5	84	90	0	312	22	23	22	31	1.98
40782649--40782832	40	4.6	40	83	6	205	23	21	27	27	1.99
40782649--40782829	80	2.3	81	84	9	230	23	21	27	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40784765--40784823	28	2.1	28	81	6	66	30	23	23	22	1.99
40784926--40784976	26	2.0	26	88	0	75	41	29	17	11	1.85
40785157--40785264	27	4.0	26	79	7	108	22	15	17	44	1.86
40788877--40788918	19	2.2	19	87	8	59	45	11	2	40	1.54
40789559--40789622	11	5.8	11	76	7	67	7	0	50	42	1.31
40789558--40789622	22	2.9	22	84	11	87	7	0	49	43	1.31
40793672--40793742	26	2.7	26	77	0	79	26	23	19	29	1.98
40794429--40794588	52	3.0	52	65	16	130	26	10	13	48	1.75
40794382--40794547	52	3.2	51	68	16	149	31	7	12	49	1.67
40794380--40794588	106	2.0	106	95	0	373	29	9	12	48	1.72
40803827--40803894	34	2.0	34	82	5	84	22	26	22	29	1.99
40806156--40806202	20	2.3	20	85	0	67	29	36	12	21	1.91
40808453--40808513	31	1.9	32	86	3	88	39	8	3	49	1.49
40811463--40811513	26	2.0	26	96	0	93	54	9	5	29	1.56
40811786--40811833	24	2.0	24	92	4	80	31	8	16	43	1.78
40821553--40821610	28	2.0	29	80	9	66	20	5	18	55	1.62
40839569--40839747	85	2.1	85	98	0	349	37	8	27	26	1.85
40841006--40841505	47	10.6	47	92	3	715	33	9	29	27	1.88
40841356--40841477	22	5.3	22	62	21	61	33	11	29	25	1.91
40843936--40844008	38	1.9	38	86	5	103	32	19	23	24	1.97
40844064--40844344	40	7.1	40	90	0	411	24	22	28	25	1.99
40845601--40845779	85	2.1	85	98	0	349	37	8	27	26	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40847044--40847544	47	10.6	47	92	3	708	33	9	29	27	1.88
40847395--40847517	22	5.3	22	62	21	63	34	11	29	25	1.91
40849755--40849785	16	1.9	16	93	0	53	80	0	12	6	0.89
40861045--40861211	40	4.2	40	90	0	228	26	28	20	24	1.99
40861045--40861191	79	1.9	80	89	1	233	27	27	20	24	1.99
40861043--40861267	40	5.7	40	84	4	204	26	27	20	24	1.99
40861043--40861267	80	2.8	79	82	3	227	26	27	20	24	1.99
40872845--40872877	14	2.4	14	90	10	50	60	0	0	39	0.97
40894773--40894995	40	5.6	40	85	3	236	26	27	21	24	1.99
40894927--40895004	40	1.9	41	82	10	97	26	28	21	23	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199