genome.fa.s20.2.7.7.80.10.50.1000.165.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Length:  58101237

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  165  of  199  ( 23844 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48457361--48457453	45	2.1	45	89	0	141	27	20	20	31	1.97
48459991--48460391	50	7.8	50	89	3	480	20	28	22	27	1.99
48465307--48465644	102	3.3	100	87	3	439	29	15	25	30	1.96
48465311--48465644	51	6.6	50	80	7	336	29	14	25	30	1.95
48471447--48471476	14	2.1	14	100	0	60	56	0	20	23	1.42
48473624--48473707	21	4.0	21	84	4	98	35	25	23	15	1.94
48473624--48473707	44	2.0	41	81	11	98	35	25	23	15	1.94
48474897--48474928	16	2.1	16	94	5	57	40	0	0	59	0.97
48480838--48481152	43	7.5	41	77	11	269	34	26	18	21	1.96
48480830--48481152	85	3.8	85	88	1	443	33	26	18	21	1.96
48484967--48485012	18	2.6	18	86	3	58	41	2	0	56	1.11
48486292--48486366	28	2.6	29	75	12	75	50	4	2	42	1.35
48487081--48487106	6	4.3	6	100	0	52	38	0	0	61	0.96
48489317--48489553	27	8.8	27	80	5	203	45	17	14	21	1.84
48489304--48489498	54	3.6	53	85	2	257	45	15	15	23	1.84
48489304--48489539	81	2.9	79	81	4	258	44	17	14	22	1.85
48489731--48489807	26	3.0	26	90	0	109	14	23	24	37	1.92
48490453--48490495	20	2.2	20	86	0	59	48	18	13	18	1.80
48517422--48517490	31	2.3	31	85	7	88	23	8	18	49	1.75
48519462--48519578	25	5.0	22	71	16	92	11	16	25	46	1.81
48519498--48519563	25	2.6	25	95	0	114	10	13	27	48	1.75
48521626--48521684	30	2.0	30	87	9	86	22	49	0	28	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48525723--48525784	19	3.2	19	69	13	63	35	46	8	9	1.66
48525720--48525812	39	2.4	39	88	0	114	33	46	8	11	1.71
48539711--48539755	13	3.5	13	78	3	56	31	20	6	42	1.77
48541996--48542041	22	2.1	22	91	0	74	58	28	10	2	1.43
48542327--48542402	11	6.8	11	75	21	61	40	0	2	56	1.13
48542345--48542479	68	2.0	69	89	1	209	41	2	3	51	1.34
48543526--48543583	26	2.3	26	82	8	66	37	0	5	56	1.21
48543527--48543602	34	2.2	33	79	9	82	39	0	6	53	1.27
48544859--48544893	18	1.9	19	88	11	56	57	5	25	11	1.56
48547251--48547336	45	1.9	45	90	0	136	36	23	13	26	1.93
48547338--48547635	51	5.9	51	76	4	298	30	26	17	24	1.97
48547345--48547631	102	2.8	102	91	1	461	31	26	17	24	1.97
48553253--48553328	11	6.8	11	75	21	54	40	2	1	55	1.22
48553275--48553346	38	1.9	37	86	13	103	40	5	1	52	1.33
48553338--48553455	62	1.9	60	86	3	164	42	4	4	49	1.42
48559552--48559634	38	2.2	40	91	8	145	56	0	14	28	1.39
48559615--48559660	24	2.0	24	95	4	85	50	0	19	30	1.48
48560219--48560526	110	2.8	111	78	11	287	26	23	20	29	1.99
48560573--48561362	255	3.0	258	88	8	1149	32	20	19	28	1.97
48561851--48561898	14	3.5	13	80	11	51	33	2	22	41	1.66
48561858--48561901	7	6.1	7	81	2	52	36	2	22	38	1.67
48561868--48561917	21	2.4	21	96	0	91	34	4	24	38	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48562395--48562435	21	1.9	22	90	5	66	21	39	0	39	1.54
48563238--48563270	15	2.2	15	94	0	57	39	3	3	54	1.31
48563572--48563659	9	10.4	8	73	20	72	52	13	1	32	1.48
48563593--48563646	25	2.2	25	89	0	81	53	14	1	29	1.52
48563627--48563674	16	3.0	16	87	0	69	50	18	2	29	1.59
48574652--48574735	44	1.9	44	87	2	125	36	21	14	27	1.92
48574737--48575032	51	5.9	51	74	6	280	30	26	17	25	1.98
48574744--48575028	100	2.8	101	90	3	441	30	26	17	24	1.97
48580580--48580687	37	2.9	36	78	11	105	41	3	1	52	1.30
48580580--48580655	11	6.8	11	75	21	54	40	2	1	55	1.22
48580602--48580674	39	1.9	37	86	10	103	41	5	1	52	1.33
48580666--48580783	62	1.9	60	86	3	164	42	4	4	49	1.42
48585136--48585160	2	12.5	2	100	0	50	48	0	0	52	1.00
48586919--48586998	41	2.0	41	100	0	160	56	0	15	28	1.39
48586980--48587026	25	2.0	24	91	8	78	51	0	19	29	1.47
48587657--48587971	113	2.8	114	83	5	372	26	23	20	29	1.99
48588447--48588625	77	2.3	76	77	10	195	32	19	18	29	1.96
48588026--48588820	259	3.0	266	94	2	1406	32	19	19	28	1.96
48589378--48589418	21	1.9	22	85	5	57	24	0	31	43	1.54
48589399--48589448	15	3.4	14	77	5	55	32	2	26	40	1.67
48589399--48589455	22	2.6	21	86	5	60	33	1	26	38	1.67
48589369--48589451	29	2.9	30	78	7	91	31	2	28	37	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48589406--48589454	15	3.3	15	74	8	55	32	2	26	38	1.68
48589415--48589467	22	2.5	22	96	3	99	32	3	26	37	1.74
48591091--48591123	15	2.2	15	94	0	57	39	3	3	54	1.31
48591299--48591353	24	2.2	26	83	6	69	58	18	1	21	1.49
48591443--48591659	9	25.8	9	72	13	140	47	19	2	30	1.64
48591439--48591595	25	6.3	23	78	10	116	49	16	2	31	1.59
48591444--48591582	41	3.4	41	86	6	167	49	17	2	30	1.58
48591484--48591641	50	3.2	48	77	7	154	45	19	3	31	1.66
48591502--48591659	25	6.2	25	77	5	122	45	20	3	30	1.67
48591448--48591659	16	12.6	18	72	11	101	47	19	2	30	1.64
48597126--48597194	21	3.3	21	83	0	84	34	20	42	2	1.67
48597627--48597879	42	6.0	41	81	9	217	26	22	21	30	1.99
48597630--48597880	85	3.0	84	83	8	253	25	21	21	30	1.98
48597630--48597899	127	2.1	129	81	8	311	26	22	21	29	1.99
48598475--48598503	15	1.9	15	100	0	58	24	6	6	62	1.45
48603102--48603155	26	2.1	26	100	0	108	35	18	14	31	1.91
48604838--48604878	21	2.0	21	90	0	64	36	17	12	34	1.87
48612413--48612480	30	2.2	31	82	7	77	36	5	29	27	1.80
48612807--48612856	26	1.9	26	91	0	82	18	22	30	30	1.97
48612804--48613033	102	2.3	102	90	2	356	20	20	28	30	1.98
48618303--48618348	16	2.9	16	78	12	51	45	0	2	52	1.13
48618209--48618465	120	2.1	119	98	1	496	42	2	5	49	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48618423--48618470	15	3.1	15	82	5	60	47	0	2	50	1.12
48618424--48618472	16	3.1	16	80	13	57	46	0	2	51	1.12
48618607--48618697	45	2.0	44	82	2	110	35	26	5	32	1.80
48618676--48618729	16	3.4	16	89	0	72	33	31	0	35	1.58
48624161--48624368	33	5.7	33	69	21	121	21	18	27	32	1.96
48624156--48624367	75	2.8	75	88	0	325	21	17	28	32	1.96
48628446--48628508	21	2.8	22	80	11	74	65	3	11	20	1.38
48636951--48636997	21	2.2	22	81	11	53	40	21	8	29	1.83
48637783--48637909	62	2.0	63	96	1	238	23	21	28	26	1.99
48640849--48640889	18	2.3	18	87	4	57	34	12	17	36	1.87
48642632--48642701	20	3.3	20	73	13	61	38	0	0	61	0.96
48644195--48644244	21	2.4	21	90	3	75	36	12	14	38	1.83
48650790--48650827	19	2.0	19	94	0	67	44	5	18	31	1.72
48653201--48653229	14	2.0	15	93	6	51	20	0	6	72	1.07
48653243--48653453	9	22.7	9	71	19	64	35	2	3	58	1.29
48653245--48653350	20	5.7	19	71	18	80	33	0	2	62	1.16
48653245--48653287	10	4.4	10	94	2	70	30	0	0	69	0.88
48653243--48653453	65	3.2	62	75	14	158	35	2	3	58	1.29
48653424--48653473	20	2.7	18	81	9	57	28	4	0	68	1.08
48657512--48657562	24	2.0	25	85	14	70	17	17	3	60	1.50
48658584--48658638	10	5.6	10	75	12	51	60	1	5	32	1.30
48658574--48658649	29	2.7	29	76	17	86	59	1	7	31	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48659058--48659098	14	2.8	14	88	7	55	78	2	0	19	0.87
48660592--48660642	22	2.3	23	86	6	77	33	19	15	31	1.93
48664166--48664229	31	2.1	31	100	0	128	40	12	18	28	1.87
48667259--48667338	6	12.5	6	78	15	72	73	3	3	18	1.13
48667254--48667327	11	6.2	11	71	20	51	75	2	2	18	1.04
48667259--48667338	20	4.2	19	75	18	69	73	3	3	18	1.13
48670108--48670167	22	2.7	23	73	19	63	66	6	0	26	1.16
48670117--48670150	4	8.0	4	90	9	50	73	2	0	23	0.97
48671499--48671550	23	2.3	22	75	21	54	9	23	1	65	1.32
48671544--48671582	18	2.2	18	85	0	51	12	23	2	61	1.43

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199