genome.fa.s20.2.7.7.80.10.50.1000.110.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Length:  58101237

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  110  of  199  ( 23844 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31203649--31203694	24	1.9	24	90	0	74	15	28	10	45	1.79
31203666--31203770	41	2.6	40	88	5	149	21	23	7	46	1.77
31212523--31212548	13	2.0	13	100	0	52	30	7	7	53	1.57
31221513--31221559	2	23.5	2	100	0	94	0	0	48	51	1.00
31226978--31227029	21	2.5	21	83	0	68	59	13	13	13	1.61
31239460--31239525	10	5.8	11	76	16	55	37	1	1	59	1.16
31239458--31239523	22	2.9	21	80	10	60	39	1	1	57	1.17
31239460--31239510	13	4.2	12	80	16	61	37	1	0	60	1.08
31247110--31247246	61	2.3	58	88	7	195	52	2	0	44	1.18
31253433--31253465	17	2.0	17	88	5	50	75	0	21	3	0.93
31259173--31259244	22	3.3	21	75	11	65	34	18	5	41	1.73
31259173--31259318	44	3.3	44	77	5	107	31	19	7	41	1.79
31259258--31259318	22	2.8	22	82	0	77	31	21	4	42	1.74
31259268--31259313	12	4.0	12	75	11	51	32	21	4	41	1.73
31262272--31262316	19	2.3	20	88	3	65	28	6	17	46	1.73
31270185--31270840	179	3.7	179	89	0	990	28	17	21	32	1.96
31270495--31270840	44	7.8	43	67	16	145	27	17	22	31	1.97
31270879--31271318	143	3.1	143	90	0	682	28	22	19	29	1.98
31272622--31272658	16	2.4	16	86	8	51	2	2	10	83	0.84
31277378--31277555	27	6.6	27	79	3	115	28	28	16	26	1.97
31277378--31277555	54	3.3	55	80	10	204	28	28	16	26	1.97
31277399--31277554	82	1.9	81	85	3	215	28	28	16	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31280723--31280764	20	2.0	20	86	9	57	66	4	0	28	1.12
31282899--31283220	109	3.0	108	88	1	468	35	16	16	31	1.91
31283275--31283305	15	2.1	15	93	0	53	64	6	9	19	1.45
31283347--31283382	4	8.8	4	96	3	63	75	2	0	22	0.94
31285371--31286023	132	5.0	130	81	7	515	27	22	18	30	1.98
31285528--31286069	260	2.1	261	86	4	772	27	23	19	29	1.98
31285528--31286069	132	4.1	131	87	3	756	27	23	19	29	1.98
31286168--31286929	46	16.7	46	85	3	864	30	25	17	26	1.98
31286169--31286924	366	2.1	365	93	1	1271	30	25	17	26	1.97
31288168--31288222	6	9.0	6	84	4	74	0	23	0	76	0.79
31291111--31291650	109	5.0	109	93	0	843	35	17	15	31	1.91
31291705--31291735	15	2.1	15	93	0	53	64	6	9	19	1.45
31291711--31291756	16	2.9	17	84	9	53	69	8	4	17	1.31
31291713--31291755	22	2.0	21	86	4	59	74	9	2	13	1.16
31291778--31291813	4	8.8	4	96	3	63	75	2	0	22	0.94
31296030--31296066	12	3.1	12	88	0	56	24	0	43	32	1.55
31296029--31296064	18	2.0	18	88	0	54	22	0	44	33	1.53
31297435--31297543	53	2.1	53	100	0	218	37	16	11	34	1.84
31308903--31308980	20	4.0	19	80	9	86	34	8	11	44	1.72
31308903--31308983	40	2.0	40	86	6	112	34	8	11	45	1.70
31309323--31309347	11	2.3	11	100	0	50	56	16	0	28	1.41
31311593--31311766	27	6.4	27	85	4	206	26	14	28	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31311593--31311745	82	1.9	81	89	4	236	26	14	28	30	1.95
31311586--31311766	82	2.2	81	83	2	229	26	14	28	30	1.95
31315751--31315790	20	2.0	21	85	14	57	32	10	17	40	1.83
31318833--31318910	20	3.9	21	75	8	65	30	5	15	48	1.66
31320330--31320643	157	2.0	157	99	0	619	27	11	26	35	1.91
31321809--31322792	493	2.0	493	93	0	1689	27	17	23	31	1.97
31326404--31326442	17	2.2	18	86	4	53	61	0	12	25	1.31
31327059--31327120	29	2.2	28	85	2	79	24	11	17	46	1.81
31327344--31327458	51	2.2	52	93	3	198	27	28	0	43	1.55
31329252--31329286	18	1.9	18	88	0	52	25	34	8	31	1.86
31329700--31329758	26	2.3	26	88	2	84	50	1	8	38	1.43
31329761--31329842	29	2.8	28	85	7	110	40	28	1	30	1.64
31329754--31330041	76	3.8	75	81	9	368	45	26	0	28	1.57
31329790--31330072	47	5.8	47	87	8	404	44	26	0	28	1.57
31329817--31329860	18	2.4	18	88	0	70	50	22	2	25	1.61
31329866--31329907	18	2.3	18	95	0	75	47	23	0	28	1.52
31329884--31329994	29	3.8	29	96	0	195	44	28	0	27	1.55
31329774--31330069	152	1.9	152	96	1	549	45	27	0	27	1.56
31329971--31330059	18	5.3	18	71	17	84	47	23	0	29	1.52
31329837--31330069	76	3.1	76	79	11	314	45	26	0	27	1.54
31330067--31330303	55	4.3	55	88	5	361	37	10	5	46	1.62
31330173--31330259	18	4.7	18	69	10	68	35	5	4	54	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31330067--31330303	111	2.1	110	89	3	361	37	10	5	46	1.62
31330287--31330311	10	2.5	10	100	0	50	44	8	0	48	1.32
31333422--31333772	124	2.8	125	91	1	571	32	21	16	29	1.95
31336173--31336220	22	2.2	23	82	14	57	39	10	6	43	1.64
31337308--31337395	23	3.8	23	80	7	81	40	20	9	29	1.83
31341055--31341081	6	4.5	6	100	0	54	14	0	0	85	0.61
31348271--31348320	18	2.8	18	81	0	64	38	18	2	42	1.61
31360504--31360528	12	2.1	12	100	0	50	92	0	8	0	0.40
31366374--31366418	21	2.1	21	91	0	72	8	20	2	68	1.27
31366380--31366421	21	2.0	22	95	4	77	9	19	0	71	1.13
31366380--31366439	21	3.0	20	83	14	61	8	20	0	71	1.11
31385897--31385956	3	19.3	3	74	19	52	26	3	3	66	1.23
31386283--31386354	24	3.3	22	74	12	67	19	4	5	70	1.23
31386384--31386430	17	2.7	17	75	15	51	21	6	0	72	1.07
31386481--31386787	110	2.8	110	90	2	487	29	17	18	34	1.94
31390172--31390232	31	1.9	32	83	9	81	39	1	1	57	1.18
31390290--31390400	10	11.0	10	71	18	52	29	2	2	64	1.21
31390290--31390351	29	2.0	31	81	9	74	37	3	1	58	1.24
31390347--31390373	10	2.7	10	100	0	54	7	0	7	85	0.75
31390317--31390402	19	4.4	19	70	18	68	26	1	2	69	1.07
31390584--31390623	20	2.0	21	85	14	57	25	5	7	62	1.42
31394844--31394898	24	2.3	24	87	9	85	40	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31394860--31394915	24	2.3	24	84	6	69	39	1	1	57	1.20
31397704--31397747	22	2.0	22	100	0	88	36	4	4	54	1.41
31398380--31398446	31	2.2	31	91	2	109	41	7	14	35	1.75
31404656--31404702	5	9.4	5	81	9	60	61	0	2	36	1.08
31405031--31405079	25	2.0	25	92	8	82	73	2	24	0	0.94
31405438--31405637	109	1.8	109	96	0	373	36	9	6	48	1.60
31410717--31410792	33	2.3	32	75	2	80	35	21	23	19	1.96
31411081--31411160	31	2.5	32	78	6	83	38	25	18	17	1.92
31411207--31411272	27	2.4	27	82	9	73	34	18	22	24	1.96
31411347--31411403	24	2.4	24	90	0	87	42	22	7	28	1.80
31411420--31411535	27	4.4	27	74	2	110	21	18	21	37	1.94
31412776--31412876	47	2.2	47	96	1	186	51	7	21	18	1.72
31426293--31426371	25	3.3	25	61	10	65	32	5	29	32	1.79
31426277--31426893	47	13.1	47	94	0	1009	32	8	29	29	1.88
31427012--31427090	37	2.1	37	88	4	115	26	18	29	25	1.98
31432523--31432568	13	3.5	13	87	3	65	34	23	4	36	1.75
31447637--31447829	50	3.7	50	81	8	210	23	28	21	26	1.99
31451882--31452038	40	3.9	40	87	0	215	31	17	29	20	1.96
31455745--31455818	16	4.4	16	65	18	51	37	13	17	31	1.89
31461199--31461378	28	6.6	27	94	2	288	31	28	13	26	1.94
31461199--31461378	55	3.3	55	94	1	299	31	28	13	26	1.94
31461199--31461378	83	2.2	82	93	1	306	31	28	13	26	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31469469--31469775	40	7.8	39	80	5	296	31	18	28	21	1.97
31469490--31469775	119	2.4	120	81	3	328	30	18	28	22	1.97
31474395--31474435	21	1.9	22	90	5	66	70	2	4	21	1.18
31476582--31476657	35	2.2	35	82	15	97	30	9	19	40	1.83
31480417--31480441	11	2.3	11	100	0	50	44	0	16	40	1.47
31483266--31483443	23	7.7	22	71	14	83	21	3	32	42	1.71
31483296--31483486	23	8.5	22	72	7	89	21	5	31	40	1.77
31490354--31490379	7	3.7	7	100	0	52	11	0	0	88	0.52
31491054--31491111	21	2.8	21	81	0	80	15	29	29	25	1.96
31494631--31494837	27	7.6	27	91	3	315	26	14	28	30	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199