genome.fa.s20.2.7.7.80.10.50.1000.44.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Length:  58101237

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  44  of  199  ( 23844 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13102631--13103159	264	2.0	265	95	1	963	33	18	24	23	1.96
13107547--13107735	102	1.8	103	86	6	274	23	17	11	46	1.81
13108115--13108572	44	10.9	43	71	14	264	26	16	27	30	1.97
13120788--13120849	29	2.1	30	90	3	99	56	14	3	25	1.53
13121256--13121303	15	3.3	15	71	11	55	22	8	12	56	1.63
13123200--13123250	21	2.4	21	86	0	66	70	5	3	19	1.24
13127990--13128521	266	2.0	266	96	0	992	33	18	24	23	1.97
13132920--13133111	104	1.8	105	85	6	271	23	18	11	46	1.82
13133494--13134195	44	15.9	45	77	6	625	27	16	26	29	1.97
13133489--13134111	132	4.7	132	97	0	1138	27	16	26	30	1.97
13134264--13134554	100	2.9	98	80	7	354	30	22	21	25	1.99
13134563--13134874	40	7.7	40	79	11	337	31	25	19	23	1.98
13134546--13134879	82	4.1	82	91	1	528	32	25	19	22	1.97
13142527--13142619	18	5.2	18	86	0	132	26	23	17	32	1.96
13142531--13142619	36	2.5	36	94	0	151	26	23	16	32	1.96
13151526--13151568	11	4.2	10	86	13	61	69	9	2	18	1.26
13151526--13151568	21	2.1	22	87	12	65	69	9	2	18	1.26
13152552--13152585	14	2.3	14	90	10	50	41	0	2	55	1.15
13153806--13153831	2	13.0	2	100	0	52	50	0	50	0	1.00
13154837--13154869	11	3.0	11	91	8	50	69	0	3	27	1.03
13154996--13155061	3	22.0	3	77	0	69	57	3	6	33	1.38
13156870--13156913	21	2.1	21	86	0	61	22	31	4	40	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13157165--13157345	48	4.0	46	70	7	138	27	24	18	30	1.98
13157166--13157540	206	1.8	207	89	1	599	28	25	16	30	1.97
13169665--13169691	8	3.4	8	100	0	54	37	0	11	51	1.37
13169794--13169850	3	19.0	3	81	0	69	59	1	5	33	1.30
13172695--13172751	17	3.2	17	78	9	51	57	1	1	38	1.19
13173189--13173216	14	2.0	14	100	0	56	7	0	7	85	0.73
13173324--13173370	10	4.5	10	75	19	51	38	0	2	59	1.09
13173393--13173424	12	2.7	12	95	0	55	28	0	0	71	0.86
13173391--13173432	12	3.6	12	87	3	50	35	0	0	64	0.94
13173462--13173494	15	2.2	15	100	0	66	60	6	0	33	1.21
13180381--13180430	20	2.5	19	81	9	55	38	0	2	60	1.09
13192274--13192324	18	2.8	18	69	0	57	15	41	3	39	1.66
13195384--13195417	14	2.4	14	90	0	50	32	20	8	38	1.84
13197013--13197108	29	3.2	28	79	8	102	45	4	13	36	1.63
13200530--13200615	45	1.9	45	90	0	136	43	13	23	19	1.87
13205262--13205307	23	1.9	25	86	8	69	26	6	2	65	1.28
13206462--13206494	17	1.9	17	93	0	57	42	9	9	39	1.68
13220815--13220876	4	15.5	4	73	21	51	22	4	0	72	1.03
13221894--13221937	10	4.5	10	82	2	54	75	2	0	22	0.92
13221894--13221923	16	1.9	15	93	6	51	76	0	0	23	0.78
13221894--13221945	18	3.1	16	75	21	52	76	1	0	21	0.87
13221907--13221953	24	2.0	24	82	0	58	78	2	2	17	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13224421--13224454	18	2.0	18	88	11	54	32	0	14	52	1.42
13229534--13229567	15	2.2	16	94	5	61	38	0	5	55	1.24
13229827--13229864	20	1.9	20	84	10	51	39	2	0	57	1.12
13229801--13229873	28	2.6	28	72	10	67	31	4	2	61	1.29
13231777--13231836	22	2.8	22	85	7	70	16	23	18	41	1.90
13232463--13232555	17	5.6	17	71	14	79	56	2	1	39	1.18
13232529--13232595	26	2.6	26	77	13	75	56	1	0	41	1.08
13232560--13232597	14	2.4	17	87	12	55	55	0	0	44	0.99
13233157--13233195	15	2.6	15	83	0	51	35	25	33	5	1.78
13247522--13247565	3	14.7	3	100	0	88	68	0	0	31	0.90
13257365--13257416	20	2.4	22	84	12	72	34	0	3	61	1.14
13271686--13271727	19	2.2	19	86	0	57	57	26	2	14	1.50
13278116--13278175	30	2.0	31	83	3	77	41	0	38	20	1.52
13287739--13287915	46	3.8	46	91	1	284	38	9	22	29	1.86
13291709--13291762	5	10.8	5	100	0	108	40	0	0	59	0.98
13296598--13296650	23	2.3	23	93	0	88	16	13	5	64	1.47
13302789--13302841	27	1.9	28	96	3	99	26	32	24	16	1.97
13302653--13303019	103	3.6	102	88	2	504	32	28	20	18	1.96
13302861--13302942	27	2.7	30	87	10	107	32	30	21	14	1.94
13303346--13303410	30	2.2	29	81	8	76	30	27	6	35	1.81
13303353--13303410	30	1.9	30	85	0	80	31	24	6	37	1.82
13308550--13308574	1	25.0	1	100	0	50	100	0	0	0	0.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13311381--13311414	17	1.9	18	88	5	52	35	2	5	55	1.39
13311369--13311440	30	2.4	31	80	15	89	38	4	2	54	1.34
13311403--13311437	17	2.0	18	94	5	63	40	0	2	57	1.14
13312219--13312255	6	6.2	6	100	0	74	51	0	0	48	1.00
13312597--13312738	71	2.0	71	91	4	234	42	13	7	35	1.73
13315426--13315470	25	1.9	24	86	13	67	55	4	4	35	1.40
13316189--13316215	4	6.8	4	100	0	54	22	0	0	77	0.76
13329344--13329370	4	6.8	4	100	0	54	22	0	0	77	0.76
13332450--13332510	21	2.9	21	90	0	95	52	0	13	34	1.40
13336124--13336163	15	2.7	15	100	0	80	47	7	15	30	1.72
13336921--13336962	17	2.4	17	88	8	57	73	2	0	23	0.94
13336923--13336980	24	2.4	25	86	11	77	75	1	1	20	0.97
13336934--13337003	28	2.6	27	81	16	83	72	0	2	24	0.98
13336975--13337023	20	2.4	21	80	13	57	67	2	2	28	1.13
13337211--13337258	22	2.2	22	85	3	62	31	0	4	64	1.12
13338157--13338199	18	2.4	17	88	7	59	74	0	4	20	1.00
13338163--13338322	30	5.5	29	70	14	89	62	1	6	30	1.27
13338156--13338246	19	4.8	18	76	11	85	64	0	6	28	1.18
13338162--13338277	19	6.0	19	75	8	56	63	0	5	31	1.16
13338162--13338275	10	11.6	10	70	15	69	64	0	5	29	1.15
13340344--13340408	32	2.0	32	96	0	121	35	18	10	35	1.86
13350083--13350125	21	2.0	22	90	4	70	23	9	9	58	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13350101--13350128	12	2.3	12	100	0	56	14	7	7	71	1.29
13352574--13352714	44	3.1	44	71	16	153	46	3	3	46	1.37
13352604--13352743	44	3.1	45	70	20	139	45	2	3	48	1.34
13352549--13352790	91	2.7	91	94	3	420	47	3	2	46	1.34
13353749--13353784	3	12.0	3	100	0	72	33	0	0	66	0.92
13355993--13356036	19	2.3	20	84	7	56	27	20	11	40	1.86
13358088--13358138	17	2.9	18	91	5	79	86	11	0	1	0.66
13358086--13358138	9	5.8	9	88	6	72	86	11	0	1	0.64
13358147--13358189	10	4.6	9	81	18	52	86	0	11	2	0.67
13360225--13361299	175	6.2	173	93	1	1705	30	19	21	28	1.98
13360225--13361299	345	3.1	344	90	3	1676	30	19	21	28	1.98
13361135--13361576	129	3.5	129	90	3	680	29	19	20	30	1.97
13360225--13361503	44	29.7	43	67	15	495	30	19	21	28	1.97
13362021--13362067	24	2.0	24	95	0	85	46	38	4	10	1.58
13369830--13369919	44	2.0	44	86	0	126	46	2	10	41	1.49
13370201--13370269	28	2.4	28	85	2	102	63	0	1	34	1.03
13372004--13372053	26	1.9	26	91	0	82	28	8	22	42	1.81
13387497--13387533	18	2.0	20	89	10	60	43	0	5	51	1.24
13388005--13388037	17	1.9	17	88	11	50	57	6	6	30	1.47
13390865--13391071	44	4.7	45	70	11	142	26	26	19	28	1.99
13390848--13390983	44	3.1	43	70	10	123	27	22	22	27	1.99
13390848--13391030	88	2.1	88	90	4	289	27	24	21	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13390890--13391074	44	4.2	44	75	5	167	27	24	20	28	1.99
13390864--13391071	88	2.4	86	84	8	249	25	25	19	28	1.99
13391127--13391929	89	9.0	89	90	0	1214	26	22	18	32	1.97
13395682--13395726	19	2.4	19	85	7	56	44	8	20	26	1.80
13395752--13395778	13	2.1	13	100	0	54	44	25	7	22	1.79
13402613--13402669	23	2.5	22	86	8	71	38	40	7	14	1.73
13404360--13404403	18	2.3	20	81	18	58	31	15	0	52	1.44
13404899--13405099	106	1.9	106	94	0	357	29	20	19	30	1.97
13416510--13417233	88	8.5	88	79	9	648	27	15	26	30	1.96
13416539--13417242	132	5.5	132	89	5	877	27	16	26	29	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199