genome.fa.s20.2.7.7.80.10.50.1000.114.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Length:  58101237

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  114  of  199  ( 23844 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32460870--32460906	12	3.1	12	92	0	56	59	0	0	40	0.97
32460822--32460930	49	2.3	48	82	6	123	55	1	7	35	1.39
32461319--32461347	15	2.0	15	93	6	51	6	51	34	6	1.55
32462480--32462676	44	4.5	44	68	14	131	27	21	20	30	1.98
32462520--32462972	85	5.3	85	76	8	425	27	21	20	30	1.98
32462423--32462887	129	3.6	129	90	0	696	27	20	20	31	1.98
32462442--32463021	129	4.5	129	83	5	561	28	21	19	30	1.98
32462775--32464329	87	17.9	87	71	9	559	27	23	20	29	1.98
32463078--32464159	218	5.0	218	94	0	1858	26	23	20	29	1.98
32463078--32464159	437	2.5	436	94	0	1867	26	23	20	29	1.98
32464080--32464329	44	5.9	42	71	12	118	29	22	18	29	1.98
32463910--32464376	175	2.7	172	87	3	636	27	22	19	29	1.98
32465583--32465633	6	8.3	6	77	18	52	13	15	0	70	1.17
32465580--32465626	7	7.0	7	85	9	71	14	17	0	68	1.22
32465583--32465625	13	3.3	13	93	0	77	13	16	0	69	1.19
32465580--32465626	20	2.3	20	89	7	69	14	17	0	68	1.22
32465602--32465640	10	3.5	11	86	13	53	10	15	0	74	1.07
32465583--32465633	13	4.2	12	80	14	52	13	15	0	70	1.17
32466437--32466535	9	10.8	9	73	12	67	9	7	5	78	1.07
32470033--32470310	109	2.6	109	90	0	441	34	20	15	28	1.94
32470590--32470631	16	2.6	17	81	7	52	52	4	4	38	1.44
32470793--32470825	3	11.0	3	93	0	57	63	0	3	33	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32471601--32471635	8	4.4	8	96	0	61	25	14	48	11	1.77
32474612--32474680	34	2.0	34	97	0	129	23	18	26	31	1.97
32475556--32475617	25	2.9	19	73	24	61	4	29	9	56	1.52
32475563--32475613	25	2.0	25	100	0	102	3	31	7	56	1.46
32475600--32475672	25	2.9	25	97	0	137	4	20	21	53	1.62
32475575--32475672	50	2.0	50	84	8	128	4	23	18	54	1.61
32475607--32475685	25	3.2	25	89	3	88	3	22	20	53	1.62
32478721--32478773	15	3.6	15	80	14	74	50	9	0	39	1.35
32478704--32478778	15	4.9	15	73	18	66	48	10	0	41	1.38
32478704--32478778	29	2.5	29	91	6	114	48	10	0	41	1.38
32479655--32479720	18	3.7	18	93	0	114	34	12	10	42	1.77
32480144--32480316	72	2.4	72	82	7	235	26	6	12	54	1.61
32482271--32482334	13	4.9	13	80	0	83	35	23	9	31	1.87
32485622--32485652	16	1.9	16	93	0	53	35	0	3	61	1.12
32489181--32489227	22	2.1	22	100	0	94	36	29	4	29	1.77
32493925--32493968	23	1.9	22	82	17	54	36	25	0	38	1.56
32494013--32494101	45	2.0	45	88	0	133	34	22	16	25	1.95
32494112--32494298	51	3.7	51	76	8	202	31	25	17	26	1.97
32494110--32494294	101	1.8	102	89	3	293	31	24	17	26	1.97
32501428--32501465	20	1.9	20	100	0	76	28	0	21	50	1.49
32504151--32504176	11	2.4	11	100	0	52	30	0	23	46	1.53
32512816--32512970	77	2.0	77	100	0	310	25	12	15	45	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32514499--32514536	19	2.0	19	100	0	76	52	15	5	26	1.64
32516012--32516060	22	2.3	20	86	6	62	51	0	2	46	1.12
32516368--32516414	15	2.8	16	81	15	51	51	4	0	44	1.21
32528903--32528954	24	2.2	24	96	0	95	40	1	3	53	1.30
32528914--32528966	24	2.2	24	89	0	79	39	5	9	45	1.60
32533317--32533370	24	2.2	24	90	0	81	38	5	9	46	1.59
32538185--32538231	21	2.2	21	96	0	85	25	12	29	31	1.93
32538476--32538874	202	2.0	200	91	1	654	44	19	12	23	1.85
32541325--32541755	217	2.0	217	97	0	817	34	26	11	28	1.90
32546629--32546676	12	3.8	12	84	13	60	77	8	12	2	1.08
32546640--32546693	20	2.6	19	82	8	54	75	7	12	3	1.14
32554302--32554508	93	2.3	91	81	5	224	35	15	19	28	1.93
32555681--32555721	15	2.9	14	86	10	57	75	0	24	0	0.80
32556577--32556619	22	2.0	21	81	4	50	60	9	4	25	1.47
32557133--32557164	14	2.3	14	94	0	55	43	9	6	40	1.62
32566726--32566766	22	1.9	21	85	5	55	36	12	12	39	1.80
32572330--32572363	10	3.6	9	92	4	50	32	0	2	64	1.08
32578584--32578623	20	2.0	20	95	0	71	27	17	15	40	1.89
32580900--32580963	29	2.2	29	91	0	101	31	26	1	40	1.65
32585571--32585633	3	20.7	3	83	3	81	61	3	3	31	1.27
32593008--32593072	30	2.2	30	91	0	103	30	13	32	23	1.93
32594446--32594510	3	21.0	3	73	17	53	30	3	3	63	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32594465--32594505	17	2.5	16	92	4	64	26	4	4	63	1.35
32594446--32594510	17	3.7	18	76	14	55	30	3	3	63	1.25
32599560--32599649	47	1.9	46	86	2	126	44	16	25	13	1.84
32601033--32601173	44	3.2	44	76	9	160	31	16	21	30	1.95
32600945--32601135	44	4.2	45	73	10	156	29	18	23	28	1.98
32600945--32601785	89	9.4	89	79	8	737	29	17	23	29	1.97
32601325--32601803	45	10.7	43	75	8	336	30	16	24	28	1.96
32601329--32601832	134	3.7	132	77	9	473	30	16	24	28	1.96
32602786--32602881	47	2.0	48	97	2	185	48	11	12	27	1.75
32603221--32603285	3	21.0	3	73	17	53	30	3	3	63	1.25
32603240--32603280	17	2.5	16	92	4	64	26	4	4	63	1.35
32603221--32603285	17	3.7	18	76	14	55	30	3	3	63	1.25
32603414--32603452	20	2.0	20	84	0	51	30	0	20	48	1.50
32607837--32607898	32	1.9	32	93	0	106	35	0	1	62	1.05
32607840--32607901	14	4.1	15	76	17	65	32	0	1	66	1.02
32608977--32609027	16	3.1	16	75	8	50	27	3	0	68	1.07
32613007--32613078	19	3.6	19	74	20	58	52	2	5	38	1.39
32638918--32639159	117	2.1	117	100	0	484	32	19	7	40	1.79
32639938--32640027	28	3.2	28	80	9	94	15	11	13	60	1.60
32661445--32661508	32	2.0	33	84	9	87	42	0	7	50	1.31
32661789--32661834	20	2.3	20	92	3	76	34	0	0	65	0.93
32661790--32661842	20	2.7	20	85	2	54	32	0	5	62	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32662535--32662602	25	2.6	25	81	9	66	57	4	4	33	1.39
32670691--32670931	42	5.7	42	79	6	229	27	24	20	27	1.99
32670731--32670931	86	2.4	83	84	5	242	26	23	20	28	1.99
32670916--32670946	15	2.1	15	100	0	62	12	19	22	45	1.84
32670873--32670989	58	2.0	58	81	6	139	20	24	19	35	1.96
32671360--32671409	21	2.4	21	96	0	91	2	50	16	32	1.56
32676831--32677207	9	43.4	9	68	16	190	34	2	21	41	1.66
32676820--32676924	25	4.2	25	80	7	122	34	1	19	44	1.61
32676831--32677207	16	21.7	18	68	16	190	34	2	21	41	1.66
32676831--32676979	25	5.8	25	76	9	131	34	2	21	41	1.67
32676831--32677042	52	4.2	51	75	9	172	34	2	22	41	1.67
32677073--32677129	25	2.3	25	84	0	69	29	1	22	45	1.63
32677114--32677179	25	2.6	25	72	9	71	28	3	22	45	1.67
32676914--32677170	41	6.0	42	73	14	134	35	2	21	41	1.67
32677267--32677325	13	4.5	13	91	0	82	45	1	10	42	1.48
32677363--32677465	52	1.9	53	81	14	124	53	1	5	38	1.36
32678740--32678780	13	3.2	13	83	13	57	51	9	4	34	1.56
32678821--32678944	60	2.1	60	93	1	214	41	25	8	24	1.84
32682462--32682659	45	4.2	45	68	17	116	48	2	2	46	1.29
32682530--32682564	18	2.0	17	88	5	52	54	0	0	45	0.99
32682444--32682673	75	3.1	75	69	21	241	46	2	3	48	1.31
32682655--32682769	26	4.3	26	68	8	95	53	3	0	42	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32682675--32682790	17	7.0	17	66	20	66	56	2	0	40	1.19
32682434--32682740	145	2.1	145	87	5	469	48	2	2	45	1.31
32684540--32684578	21	1.9	20	94	5	69	25	12	5	56	1.57
32686219--32686258	21	1.9	21	84	0	53	72	10	2	15	1.21
32687739--32687808	22	3.2	22	71	18	74	42	7	8	41	1.63
32687749--32687818	21	3.3	21	72	18	72	44	8	10	37	1.69
32687733--32687818	43	2.0	43	97	0	163	44	8	9	38	1.66
32688454--32688501	21	2.2	23	85	7	64	56	0	2	41	1.11
32688824--32688889	18	3.4	19	71	21	64	50	3	1	45	1.26
32689384--32689446	20	3.3	20	62	20	53	58	1	12	26	1.43

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199