genome.fa.s20.2.7.7.80.10.50.1000.163.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Length:  58101237

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  163  of  199  ( 23844 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47782225--47782276	25	2.0	26	81	3	61	38	11	9	40	1.74
47787922--47787954	11	2.8	12	86	9	50	3	15	0	81	0.80
47788455--47788507	22	2.5	22	77	19	58	11	13	1	73	1.18
47797516--47797749	15	15.7	15	75	2	121	33	25	14	26	1.94
47797516--47797707	30	6.4	30	74	3	154	32	25	16	26	1.96
47797604--47797707	45	2.3	45	86	3	138	27	23	18	30	1.97
47807731--47807794	31	2.1	31	82	5	76	42	4	7	45	1.54
47814960--47815462	120	4.2	120	95	0	873	43	2	6	47	1.41
47815200--47815369	43	4.2	42	63	19	108	43	2	4	48	1.38
47815627--47815711	45	1.9	44	83	7	109	35	28	9	27	1.88
47826566--47826607	18	2.3	18	87	0	57	38	0	4	57	1.20
47827123--47827621	113	4.4	112	76	12	393	35	19	21	23	1.96
47828362--47828404	22	2.0	22	90	4	70	16	2	30	51	1.57
47828369--47828415	21	2.2	22	85	11	62	19	4	29	46	1.68
47828499--47828558	14	4.3	14	82	0	66	13	3	35	48	1.59
47828684--47828719	15	2.3	16	90	4	56	61	0	2	36	1.11
47829725--47829759	18	1.9	18	94	0	61	11	31	20	37	1.88
47829994--47830040	13	3.7	13	94	5	87	34	8	17	40	1.79
47834072--47834122	21	2.4	21	90	0	75	37	17	43	1	1.61
47834494--47834661	42	4.1	40	81	6	183	27	20	22	29	1.98
47834507--47834656	42	3.7	41	86	1	194	29	21	20	28	1.98
47834507--47834656	40	3.7	40	85	3	192	29	21	20	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47835284--47835341	28	2.1	28	100	0	116	20	15	10	53	1.71
47836060--47836111	22	2.4	21	79	17	54	55	5	0	38	1.24
47835987--47836278	122	2.4	121	94	1	505	51	4	0	43	1.26
47836402--47836460	29	2.1	28	87	6	84	49	5	10	35	1.59
47842935--47843062	62	2.0	63	94	5	224	34	10	25	30	1.89
47842997--47843380	46	8.4	46	96	0	682	34	13	22	30	1.92
47844639--47844766	49	2.6	49	92	1	202	25	14	28	32	1.94
47845637--47845774	22	6.0	24	75	9	108	51	7	18	22	1.71
47851709--47851752	11	3.8	11	80	11	52	31	0	4	63	1.14
47853731--47853891	33	4.8	32	69	8	124	31	14	24	28	1.95
47853665--47853903	101	2.4	101	94	0	415	32	15	23	28	1.95
47853897--47853947	24	2.1	24	88	0	75	47	5	23	23	1.73
47855017--47855072	29	1.9	29	85	7	78	62	3	10	23	1.43
47855585--47855646	3	20.7	3	100	0	124	67	0	0	32	0.91
47857504--47857537	17	2.0	17	100	0	68	35	29	0	35	1.58
47857646--47857690	23	1.9	23	82	13	56	22	6	22	48	1.73
47857880--47857913	13	2.6	13	95	0	59	8	26	38	26	1.85
47859725--47859763	11	3.6	11	87	12	55	12	15	0	71	1.14
47861795--47861896	41	2.5	41	87	3	134	28	19	23	28	1.98
47869898--47869940	21	2.0	21	86	4	59	20	2	25	51	1.60
47870292--47870334	17	2.5	17	92	0	68	18	11	30	39	1.86
47870292--47870343	17	3.1	17	81	10	61	19	13	28	38	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47871551--47871607	23	2.4	23	76	2	60	57	1	10	29	1.42
47877416--47877508	41	2.3	41	86	1	134	23	26	19	30	1.98
47877720--47877760	17	2.2	18	87	12	57	41	24	4	29	1.75
47884973--47885148	41	4.3	41	89	0	271	23	27	19	30	1.98
47884979--47885148	82	2.1	82	100	0	340	23	27	18	30	1.98
47888663--47888736	24	3.3	23	74	14	73	54	2	4	39	1.34
47888673--47888715	17	2.4	19	88	11	65	55	0	0	44	0.99
47888691--47888741	26	1.9	27	84	11	70	54	3	1	39	1.30
47890453--47890561	54	2.0	54	96	0	200	29	17	33	19	1.95
47893112--47893372	43	6.1	43	76	7	210	30	25	18	25	1.98
47895170--47895209	18	2.2	18	86	0	53	67	7	15	10	1.41
47902316--47902377	29	2.2	27	75	18	65	40	6	4	48	1.50
47905599--47905656	9	6.4	9	84	7	73	39	24	8	27	1.84
47905599--47905656	27	2.1	27	90	0	89	39	24	8	27	1.84
47916367--47916428	32	1.9	32	86	0	88	37	9	16	37	1.81
47917313--47917362	22	2.3	22	89	0	73	16	30	26	28	1.96
47917313--47917374	22	2.8	22	82	4	72	16	30	25	27	1.96
47918233--47918315	32	2.5	33	80	5	114	30	7	15	46	1.73
47923705--47923756	27	1.9	27	84	0	68	11	17	5	65	1.44
47926666--47926703	17	2.2	18	85	4	51	26	7	15	50	1.72
47926872--47926953	42	2.0	42	90	0	128	40	10	20	28	1.86
47943701--47943736	16	2.2	16	95	0	63	33	16	16	33	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47944185--47944278	42	2.2	43	83	5	120	24	26	4	44	1.72
47952808--47952838	7	4.4	7	100	0	62	29	0	41	29	1.56
47954836--47954877	17	2.5	16	82	17	50	4	26	0	69	1.08
47958653--47958696	16	2.8	16	78	0	52	0	20	0	79	0.73
47958651--47958711	27	2.3	26	86	8	79	1	19	0	78	0.83
47974418--47974860	220	2.0	219	91	0	724	39	18	12	28	1.88
47978386--47978424	11	3.3	11	80	19	51	82	0	2	15	0.79
47980578--47980603	3	8.7	3	100	0	52	69	0	0	30	0.89
47982717--47982742	13	2.0	13	100	0	52	38	53	7	0	1.30
47991066--47991112	3	15.7	3	100	0	94	34	0	0	65	0.93
47999833--47999899	34	1.9	35	87	3	100	44	14	8	31	1.76
48009437--48009470	16	2.1	16	100	0	68	64	17	5	11	1.45
48013267--48013313	24	2.0	24	86	0	67	51	0	0	48	1.00
48013283--48013309	13	2.1	13	100	0	54	51	0	0	48	1.00
48016800--48016851	22	2.2	24	78	21	58	34	0	5	59	1.21
48017004--48017070	34	1.9	35	87	3	100	44	11	8	34	1.73
48017640--48017703	32	2.0	32	93	0	110	42	10	14	32	1.80
48029804--48029832	10	3.0	10	95	5	51	51	0	10	37	1.36
48030053--48030166	37	3.1	37	83	6	142	20	14	30	35	1.92
48032393--48032462	30	2.3	31	90	2	106	28	20	14	37	1.91
48032362--48032507	75	1.9	75	90	5	233	26	18	14	40	1.89
48032422--48032641	45	4.9	45	86	1	291	27	16	14	40	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48032423--48032640	90	2.4	90	89	2	323	27	16	14	40	1.88
48032423--48032669	90	2.8	90	83	9	310	27	17	14	40	1.89
48032433--48032676	45	5.5	43	79	12	210	27	16	15	40	1.89
48032607--48032711	42	2.4	44	82	7	126	33	16	17	33	1.92
48037732--48037763	3	10.7	3	100	0	64	31	0	0	68	0.90
48053268--48053405	42	3.3	42	89	7	201	27	21	21	29	1.98
48057998--48058143	54	2.7	53	77	5	150	36	12	18	32	1.88
48058106--48058183	40	2.0	40	84	0	102	39	15	14	30	1.87
48058052--48058234	94	1.9	94	83	2	233	37	13	18	31	1.89
48058142--48058458	54	5.9	54	77	0	312	37	15	19	27	1.92
48058165--48058458	161	1.8	162	83	0	392	37	14	19	27	1.91
48058171--48058429	107	2.4	107	82	3	297	37	14	20	27	1.92
48059130--48059172	14	3.3	14	81	15	56	4	16	0	79	0.90
48072473--48072524	20	2.7	19	80	16	54	59	1	0	38	1.08
48078372--48078397	5	5.2	5	100	0	52	19	23	0	57	1.40
48078372--48078424	20	2.9	19	78	13	51	24	20	1	52	1.56
48079641--48079687	13	3.3	15	77	17	55	27	4	0	68	1.08
48096508--48096544	18	2.1	18	89	0	56	16	32	18	32	1.93
48100687--48100732	24	1.9	24	90	0	74	47	0	32	19	1.50
48100686--48100739	24	2.3	23	84	9	72	50	0	29	20	1.49
48102945--48102999	28	2.0	29	89	7	87	60	14	5	20	1.54
48103223--48103287	34	1.9	34	87	0	94	43	13	10	32	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48103852--48103921	31	2.3	31	94	0	122	21	35	25	17	1.95
48103906--48103980	29	2.6	29	86	0	96	18	40	24	17	1.91
48104348--48104396	26	2.0	24	84	8	62	71	4	22	2	1.13
48105469--48105502	16	2.1	16	94	0	59	23	5	11	58	1.55
48114136--48114259	58	2.1	59	87	1	178	15	8	16	59	1.59
48114243--48114286	19	2.3	19	88	0	61	13	9	25	52	1.70
48118307--48118469	53	2.9	54	91	6	256	22	15	14	47	1.81
48118297--48118469	59	3.0	59	88	10	286	22	15	15	46	1.83
48123743--48124005	40	6.7	40	85	6	299	25	21	26	25	1.99
48123743--48124005	39	6.7	40	84	7	292	25	21	26	25	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199