genome.fa.s20.2.7.7.80.10.50.1000.130.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Length:  58101237

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  130  of  199  ( 23844 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37668418--37668536	45	2.6	46	74	4	116	30	19	26	23	1.98
37668720--37668831	43	2.6	44	83	8	131	28	18	21	31	1.97
37669152--37669275	44	2.8	44	82	0	149	29	20	22	28	1.98
37668403--37670017	218	7.4	217	88	2	2057	28	19	24	26	1.99
37669720--37669836	44	2.6	42	74	14	101	23	17	29	28	1.97
37675619--37675647	5	6.0	5	92	8	51	20	0	0	79	0.74
37675618--37675654	15	2.4	16	82	17	51	24	0	0	75	0.80
37676480--37676525	20	2.3	21	82	14	62	54	0	2	43	1.12
37676494--37676532	19	2.0	20	90	5	62	53	2	5	38	1.37
37676494--37676544	21	2.5	20	84	9	59	56	1	3	37	1.29
37676500--37676602	29	3.5	30	71	11	95	57	1	8	32	1.40
37676510--37676553	21	2.1	21	83	8	54	63	2	4	29	1.26
37676502--37676599	30	3.3	29	68	19	67	55	2	9	33	1.43
37676584--37676642	20	2.9	20	78	19	68	61	3	10	25	1.44
37678613--37678683	29	2.4	29	80	15	83	33	1	2	61	1.19
37678625--37678688	28	2.3	29	81	5	78	34	3	3	59	1.29
37678860--37679043	88	2.1	87	81	3	217	33	9	19	38	1.84
37683781--37683822	18	2.3	18	95	0	75	14	42	2	40	1.58
37686893--37686917	12	2.1	12	100	0	50	40	0	0	60	0.97
37688417--37688450	17	2.0	17	94	0	59	61	0	2	35	1.11
37688657--37688739	26	3.2	25	79	6	67	62	3	4	28	1.32
37688681--37688739	28	2.2	25	85	8	73	66	1	3	28	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37690252--37690446	40	4.6	41	73	14	155	25	21	21	31	1.98
37690187--37690462	129	2.1	129	90	3	432	23	20	21	35	1.96
37690530--37691401	50	17.6	50	67	7	454	25	21	22	30	1.99
37690458--37691424	100	9.8	100	87	2	1258	25	22	22	30	1.99
37697327--37697591	40	6.6	39	88	4	318	24	21	27	26	1.99
37697327--37697591	80	3.3	79	88	5	365	24	21	27	26	1.99
37704911--37704966	28	2.0	28	100	0	112	17	17	25	39	1.92
37705414--37705638	40	5.7	40	87	5	305	24	22	27	25	2.00
37705414--37705671	119	2.2	119	82	6	301	25	21	27	25	2.00
37707961--37707994	17	2.0	17	94	0	59	61	0	2	35	1.11
37708204--37708282	26	3.1	25	78	5	61	60	3	5	30	1.36
37711667--37711852	102	1.8	102	87	4	277	30	20	9	39	1.85
37711587--37711881	102	2.9	100	79	8	274	31	19	9	39	1.83
37717822--37717878	29	2.0	29	85	0	78	31	28	15	24	1.96
37719051--37719183	39	3.4	39	80	8	130	42	13	9	33	1.77
37723074--37723112	21	1.9	21	89	5	62	58	0	0	41	0.98
37723073--37723118	20	2.3	20	81	7	58	63	0	0	36	0.95
37730762--37730802	19	2.2	19	86	0	55	19	21	17	41	1.90
37732826--37733037	117	1.8	117	81	6	268	26	21	22	29	1.99
37736981--37737154	36	4.8	36	79	7	183	21	12	27	38	1.90
37736990--37737177	73	2.6	72	82	7	204	22	12	27	37	1.90
37739277--37739396	56	2.1	58	84	3	154	44	5	22	27	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37740857--37740888	14	2.4	14	94	5	57	25	0	6	68	1.12
37742712--37742928	79	2.7	78	81	8	242	26	26	20	26	1.99
37742712--37742935	40	5.7	40	83	6	244	25	27	20	25	1.99
37745909--37745947	12	3.2	12	85	0	51	17	20	5	56	1.60
37746148--37746391	50	4.8	50	84	3	263	25	27	20	26	1.99
37760877--37761165	50	5.8	50	82	3	307	29	20	27	22	1.99
37760877--37761109	98	2.4	99	86	2	308	28	21	28	21	1.99
37766113--37766157	15	2.8	16	83	10	65	13	15	0	71	1.15
37766113--37766151	8	5.0	8	81	6	53	12	12	0	74	1.08
37766181--37766214	6	5.7	6	89	0	50	14	0	11	73	1.10
37783198--37783260	27	2.3	27	81	8	65	33	19	20	26	1.96
37787304--37787559	41	6.3	41	90	1	390	19	21	28	29	1.98
37792766--37792960	43	4.5	43	82	5	241	20	15	32	30	1.94
37792805--37792993	86	2.2	86	81	1	209	21	16	32	29	1.95
37795651--37795692	18	2.4	17	84	15	50	71	0	4	23	1.05
37798798--37798856	24	2.5	24	94	0	100	44	13	22	20	1.86
37798859--37798917	29	2.0	29	100	0	118	55	3	20	20	1.57
37801172--37801209	20	2.0	20	94	5	69	31	31	5	31	1.80
37803028--37803293	103	2.6	104	89	3	410	19	20	30	29	1.97
37810515--37810779	103	2.6	104	90	1	417	19	20	30	29	1.97
37816024--37816071	24	2.0	25	84	12	64	25	10	10	54	1.66
37817835--37818021	94	2.0	95	88	3	279	37	13	17	31	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37829805--37830070	103	2.6	104	90	0	417	19	20	30	29	1.97
37837299--37837564	103	2.6	104	90	0	417	19	20	30	29	1.97
37842781--37842828	24	2.0	25	84	12	64	25	10	10	54	1.66
37844613--37844802	95	2.0	97	90	2	303	36	13	17	31	1.89
37851719--37851800	43	1.9	43	85	5	112	36	19	17	26	1.94
37851803--37851907	42	2.5	42	80	1	120	34	20	20	24	1.96
37853454--37853511	24	2.4	24	88	0	89	34	3	24	37	1.72
37855277--37855320	22	2.0	23	86	4	63	34	9	2	54	1.44
37856499--37856565	34	1.9	35	93	3	118	34	7	10	47	1.66
37857363--37857415	27	2.0	27	88	7	81	41	3	0	54	1.18
37862049--37862310	39	6.7	40	87	7	319	24	26	22	26	2.00
37869975--37870236	39	6.6	39	86	6	311	24	27	22	25	2.00
37878930--37878976	13	3.5	13	81	16	60	46	0	17	36	1.48
37886707--37886731	5	5.0	5	100	0	50	20	0	0	80	0.72
37889239--37889324	26	3.4	25	85	4	109	15	25	41	17	1.88
37900922--37900974	27	2.0	27	84	0	70	32	16	28	22	1.96
37907054--37907573	47	11.1	47	93	0	826	28	30	9	32	1.88
37913989--37914021	16	2.1	16	94	0	57	69	3	3	24	1.16
37923559--37923589	2	15.5	2	100	0	62	48	0	0	51	1.00
37923658--37923708	23	2.2	24	82	10	61	35	5	1	56	1.35
37924559--37924604	24	1.9	24	86	8	67	39	6	15	39	1.73
37925670--37925820	41	3.7	41	86	3	216	33	20	23	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37925794--37925843	26	1.9	26	95	0	91	18	22	34	26	1.96
37925820--37925971	43	3.6	41	73	13	114	23	15	25	36	1.94
37941185--37941239	29	2.0	27	82	13	67	60	10	14	14	1.60
37942323--37942385	15	3.9	16	75	20	69	42	0	1	55	1.09
37942307--37942392	32	2.7	33	80	18	94	41	0	1	56	1.06
37944178--37944256	41	1.9	42	82	7	99	34	22	16	26	1.95
37944377--37944475	34	2.6	39	76	18	118	44	15	7	33	1.73
37944398--37944502	34	3.1	34	83	5	126	43	14	6	35	1.71
37951239--37951317	41	1.9	42	86	2	115	31	25	17	25	1.97
37951439--37951562	34	3.6	36	82	8	152	45	13	6	34	1.70
37953861--37954099	41	5.8	41	80	0	271	36	24	20	18	1.94
37968531--37968690	45	3.6	44	82	6	180	42	15	18	23	1.88
37974413--37974500	23	3.8	23	80	4	88	29	10	19	40	1.84
37974466--37974511	23	2.0	23	83	8	58	39	10	17	32	1.84
37976602--37976857	43	5.9	43	79	1	287	28	26	18	25	1.98
37977261--37977351	43	2.1	43	87	2	130	46	10	9	32	1.72
37981510--37981668	7	22.0	7	71	15	74	42	36	0	20	1.57
37981511--37981630	50	2.4	48	91	6	195	43	35	0	21	1.53
37981615--37981661	24	1.9	25	91	4	78	34	44	2	19	1.62
37981675--37981704	15	2.0	15	100	0	60	46	33	0	20	1.51
37981801--37981847	15	3.3	15	79	8	53	40	29	0	29	1.57
37982196--37982395	41	4.9	41	88	2	276	29	31	19	20	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37988304--37988366	31	2.2	27	83	13	81	34	1	0	63	1.04
37988362--37988409	15	3.3	14	74	8	51	27	2	0	70	0.98
37988359--37988432	30	2.5	29	86	10	105	35	1	0	63	1.03
37988383--37988426	21	2.2	21	88	11	67	29	0	0	70	0.88
37988264--37988407	39	3.6	40	86	6	195	33	2	0	63	1.08
37988266--37988429	78	2.1	78	84	6	208	34	2	0	63	1.08
37991876--37992010	71	1.9	71	93	0	234	32	19	19	28	1.96
37992449--37992545	26	3.7	27	74	8	74	48	1	8	42	1.40
37992449--37992522	26	2.8	26	81	4	78	48	1	8	41	1.41
37992562--37992672	58	1.9	59	83	5	145	47	4	12	35	1.62

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199