genome.fa.s20.2.7.7.80.10.50.1000.174.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Length:  58101237

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  174  of  199  ( 23844 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50874753--50874786	11	3.1	11	86	0	50	44	0	26	29	1.55
50874750--50874795	22	2.0	23	87	4	67	43	0	28	28	1.55
50875340--50875374	17	2.1	16	89	5	52	45	5	0	48	1.26
50875756--50875795	20	2.0	20	95	0	71	30	7	25	37	1.83
50878261--50878295	17	2.0	18	88	5	54	31	0	25	42	1.55
50879194--50879219	12	2.2	12	100	0	52	30	7	0	61	1.24
50882963--50883017	26	2.1	27	86	3	76	56	3	1	38	1.28
50883085--50883145	33	1.9	33	87	12	92	45	0	3	50	1.17
50883122--50883170	25	2.0	25	84	11	66	42	2	2	53	1.24
50886668--50886976	153	2.0	153	100	0	618	41	5	9	42	1.62
50892347--50892418	27	2.7	27	78	2	83	61	2	0	36	1.11
50895882--50895939	9	6.1	9	76	11	53	29	3	20	46	1.67
50896043--50896079	9	4.1	9	96	0	65	35	2	21	40	1.68
50896071--50896146	39	1.9	40	91	2	127	39	9	14	36	1.78
50896144--50896194	9	5.7	9	82	13	52	31	0	17	50	1.46
50896142--50896203	18	3.4	18	77	14	74	29	0	20	50	1.49
50896138--50896209	27	2.7	27	91	4	110	29	0	22	48	1.51
50896162--50896209	9	5.3	9	82	9	62	27	0	25	47	1.52
50896967--50897001	18	2.1	18	89	10	56	65	5	0	28	1.15
50898789--50898849	32	2.1	29	85	14	81	52	3	1	42	1.27
50899212--50899320	14	7.8	14	72	11	71	36	41	0	22	1.54
50899212--50899320	20	5.2	21	72	11	71	36	41	0	22	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50899460--50899494	13	2.7	13	90	0	52	34	48	0	17	1.47
50899486--50899535	22	2.3	22	86	6	66	38	38	0	24	1.56
50899883--50900035	74	2.1	75	82	6	186	35	20	15	28	1.94
50901659--50901705	24	2.0	24	82	0	58	61	2	2	34	1.20
50902356--50902399	21	2.0	21	86	4	61	65	11	4	18	1.40
50902877--50902915	9	4.3	9	80	0	51	53	10	2	33	1.48
50903000--50903066	20	3.4	19	80	15	75	52	5	0	41	1.26
50903077--50903106	13	2.4	13	94	5	53	80	0	0	20	0.72
50906553--50906599	18	2.5	19	89	3	78	40	0	2	57	1.11
50914747--50914795	20	2.4	21	82	3	55	53	6	0	40	1.26
50914786--50914849	21	2.9	22	74	21	62	54	3	1	40	1.25
50914747--50914869	65	1.9	64	80	8	142	56	5	0	37	1.29
50915418--50915559	10	15.6	9	66	20	64	30	2	2	64	1.20
50915426--50915462	19	1.9	19	89	10	58	27	0	8	64	1.21
50915399--50915476	27	2.9	26	78	16	79	32	1	6	60	1.30
50915449--50915489	19	2.1	19	86	4	55	41	2	4	51	1.36
50924027--50924073	21	2.4	19	76	16	51	23	4	2	70	1.16
50924104--50924152	18	2.7	18	78	12	55	32	4	12	51	1.58
50930071--50930113	7	6.1	7	100	0	86	58	13	0	27	1.37
50930115--50930158	7	6.3	7	83	0	52	40	0	27	31	1.56
50935086--50935110	10	2.5	10	100	0	50	48	0	8	44	1.32
50935094--50935274	55	3.3	55	96	0	344	44	6	12	37	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50935269--50935517	30	8.6	29	86	10	357	28	1	26	43	1.62
50935269--50935518	88	2.9	86	89	5	387	28	1	26	43	1.62
50935487--50935539	23	2.7	18	85	14	61	28	0	20	50	1.48
50935538--50935722	71	2.6	71	92	0	307	43	14	3	38	1.61
50936124--50936158	18	1.9	18	88	0	52	31	8	34	25	1.86
50936810--50936834	7	3.6	7	100	0	50	60	12	0	28	1.32
50937915--50937978	31	2.1	31	94	2	112	67	0	0	32	0.91
50937941--50937965	10	2.5	10	100	0	50	80	0	0	20	0.72
50938003--50938091	29	3.3	29	62	20	75	40	0	29	30	1.57
50937980--50938087	51	2.1	51	96	0	198	41	0	28	29	1.56
50938647--50938691	18	2.6	17	83	13	56	55	2	2	40	1.24
50938650--50938699	18	2.8	18	74	14	50	60	2	2	36	1.20
50942750--50942774	5	5.0	5	100	0	50	0	20	0	80	0.72
50946125--50946151	14	1.9	14	100	0	54	81	0	18	0	0.69
50946956--50946981	3	8.7	3	100	0	52	0	30	0	69	0.89
50949024--50949070	25	1.9	24	86	4	67	51	10	19	19	1.75
50968762--50968790	13	2.1	14	93	6	51	41	0	0	58	0.98
50969602--50969654	21	2.5	21	90	6	81	30	35	9	24	1.87
50971175--50971266	23	3.6	24	72	20	80	52	3	0	44	1.17
50971162--50971266	55	1.9	54	90	5	167	54	3	0	41	1.18
50972326--50972356	15	2.1	15	100	0	62	32	6	6	54	1.51
50980012--50980062	24	2.1	25	85	3	68	52	1	5	39	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50980454--50980551	37	2.8	36	73	22	102	42	3	3	51	1.33
51004013--51004062	24	2.1	24	92	0	82	40	4	24	32	1.73
51009409--51009484	36	2.1	36	80	11	84	51	1	9	38	1.42
51010031--51010067	19	1.9	19	100	0	74	35	16	10	37	1.83
51010034--51010075	19	2.3	19	88	8	61	38	11	14	35	1.83
51010341--51010390	24	2.1	24	92	0	82	40	4	24	32	1.73
51020352--51020575	79	2.8	78	85	6	274	25	27	22	24	2.00
51020333--51020575	40	6.1	40	84	7	291	25	27	22	24	2.00
51028477--51028701	119	1.9	120	84	6	305	25	27	22	24	2.00
51028458--51028701	40	6.1	40	85	6	300	25	27	22	24	2.00
51031746--51031808	30	2.1	30	96	0	117	26	9	12	50	1.71
51035043--51035084	22	1.9	22	95	0	75	33	28	9	28	1.88
51035498--51035526	15	1.9	15	100	0	58	37	41	6	13	1.72
51037879--51037984	41	2.6	41	96	0	194	29	23	19	27	1.98
51051925--51052001	33	2.4	32	82	4	91	46	16	9	27	1.77
51051991--51052057	34	1.9	35	84	3	91	43	13	10	32	1.78
51057039--51057116	30	2.5	30	81	10	86	33	1	6	58	1.31
51057132--51057193	22	2.9	23	82	15	64	61	4	6	27	1.41
51058119--51058182	26	2.3	29	79	17	73	32	7	0	59	1.26
51061231--51061295	26	2.5	26	100	0	130	38	10	6	44	1.64
51061728--51061762	16	2.1	17	89	5	54	42	8	0	48	1.33
51064484--51064522	18	2.2	17	86	13	53	33	0	20	46	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51064756--51064853	23	4.3	23	93	2	171	20	20	26	32	1.97
51064756--51064853	45	2.2	46	92	3	171	20	20	26	32	1.97
51073032--51073073	19	2.3	19	84	8	52	19	4	7	69	1.31
51073836--51073890	11	4.8	12	78	14	55	25	29	0	45	1.54
51073835--51073890	22	2.5	23	82	11	71	25	28	0	46	1.53
51073849--51073948	51	2.0	51	81	0	119	27	25	1	47	1.59
51076433--51076776	51	6.8	51	81	5	342	30	26	14	28	1.95
51076489--51076729	102	2.4	102	93	0	403	31	26	14	27	1.95
51076434--51076776	153	2.3	150	84	4	420	30	26	14	28	1.95
51076433--51076772	102	3.4	102	85	4	386	30	26	14	28	1.95
51079409--51079448	18	2.2	18	90	0	62	20	30	7	42	1.79
51080003--51080314	22	14.0	21	70	15	164	47	33	0	18	1.56
51080003--51080314	21	14.0	21	75	12	239	47	33	0	18	1.56
51080003--51080314	43	7.0	43	76	12	270	47	33	0	18	1.56
51080055--51080108	28	1.9	28	84	0	72	50	33	3	12	1.59
51080003--51080318	114	2.8	111	81	8	370	47	32	0	18	1.55
51083344--51083716	125	3.0	124	85	1	532	30	23	16	29	1.96
51084191--51084233	15	2.8	15	80	16	52	69	0	0	30	0.88
51084194--51084233	16	2.6	15	80	7	53	70	0	0	30	0.88
51085271--51085319	24	2.0	24	96	0	89	30	6	4	59	1.41
51085693--51085728	18	1.9	18	88	5	54	58	2	0	38	1.13
51090672--51090697	7	3.7	7	100	0	52	26	26	15	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51091673--51091728	9	5.9	9	76	23	53	64	1	1	32	1.14
51091683--51091716	9	3.6	10	88	11	54	70	0	0	29	0.87
51091673--51091716	18	2.4	17	88	11	61	68	0	0	31	0.90
51095712--51095766	28	2.0	28	85	7	76	29	1	5	63	1.27
51096810--51096867	28	2.1	28	83	6	73	58	0	5	36	1.20
51100936--51100992	22	2.6	22	77	0	60	38	8	1	50	1.44
51100954--51101003	26	2.0	25	84	4	64	32	10	2	56	1.44
51101215--51101294	39	2.0	41	80	4	92	31	10	2	56	1.46
51103634--51103668	17	2.1	18	89	10	56	48	0	8	42	1.33
51104276--51104308	15	2.2	15	94	0	57	48	0	0	51	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199