genome.fa.s20.2.7.7.80.10.50.1000.154.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Length:  58101237

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  154  of  199  ( 23844 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45468856--45468951	19	5.2	19	81	5	115	50	0	12	37	1.41
45468856--45468951	37	2.6	37	94	0	174	50	0	12	37	1.41
45469608--45469670	26	2.4	27	97	2	119	49	0	9	41	1.35
45470144--45470190	11	4.4	11	74	15	53	59	2	4	34	1.29
45470325--45470362	19	2.0	20	89	5	60	28	0	5	65	1.14
45476736--45476837	11	9.8	11	74	19	85	58	0	1	39	1.09
45476714--45476787	31	2.4	31	86	11	107	56	1	2	39	1.22
45476720--45476854	41	3.3	40	88	3	207	62	0	2	34	1.13
45476821--45476865	16	2.7	17	79	6	56	60	0	0	40	0.97
45477469--45477545	33	2.6	28	74	18	73	23	1	24	50	1.57
45480067--45480143	25	3.2	24	77	12	77	25	19	25	28	1.99
45480085--45480172	26	3.5	24	84	12	99	31	15	25	27	1.96
45480085--45480169	23	3.4	24	84	12	84	30	16	25	27	1.97
45485506--45485588	13	6.3	13	70	6	69	34	18	1	45	1.57
45485512--45485591	39	2.1	39	82	0	97	36	16	1	46	1.55
45485763--45485933	45	3.8	45	87	6	215	22	20	16	40	1.91
45497963--45498019	18	3.3	17	76	16	55	10	19	1	68	1.28
45508981--45509019	20	2.0	20	94	0	69	10	23	33	33	1.88
45511798--45511932	51	2.6	51	85	2	182	22	17	28	32	1.96
45511941--45512029	45	2.0	45	93	0	151	24	19	24	31	1.98
45519616--45519641	13	2.0	13	100	0	52	15	0	0	84	0.62
45520417--45520487	35	2.0	35	100	0	142	33	23	16	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45522469--45522575	20	5.4	21	68	21	79	43	1	1	52	1.22
45526463--45526608	61	2.5	58	81	8	181	45	1	2	50	1.24
45527327--45527381	18	3.0	18	84	10	67	58	3	0	38	1.16
45527931--45527955	13	1.9	13	100	0	50	40	4	8	48	1.51
45532301--45532388	42	2.1	42	93	0	149	36	15	23	23	1.94
45534315--45534351	18	2.1	18	100	0	74	27	29	16	27	1.97
45538237--45538271	5	7.0	5	100	0	70	80	0	0	20	0.72
45543057--45543090	17	2.1	16	94	5	59	85	0	14	0	0.60
45551351--45551404	21	2.6	20	88	5	72	74	3	5	16	1.16
45551371--45551400	15	1.9	16	93	6	53	73	6	3	16	1.18
45551351--45551415	21	3.2	20	82	8	69	73	3	4	18	1.13
45561311--45561466	41	3.8	41	96	1	278	30	23	19	26	1.98
45569986--45570017	10	3.1	10	95	4	55	34	9	18	37	1.83
45573032--45573074	7	6.0	7	86	5	59	37	0	16	46	1.47
45573040--45573083	22	2.0	22	82	8	54	36	0	18	45	1.49
45573551--45573611	30	2.1	27	85	8	77	16	11	22	49	1.78
45575062--45575153	39	2.3	40	90	1	141	33	3	0	63	1.11
45575151--45575211	31	2.0	31	87	6	88	36	1	1	60	1.16
45575072--45575205	49	2.7	49	89	5	191	32	2	0	63	1.15
45578574--45578653	38	2.0	40	92	4	137	28	1	38	31	1.65
45580150--45580214	34	1.9	35	90	6	107	33	18	24	23	1.96
45581967--45582064	42	2.3	43	82	5	119	24	16	28	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45581922--45582080	43	3.7	42	75	7	133	22	17	28	30	1.97
45590481--45590512	16	2.0	16	93	0	55	25	15	0	59	1.36
45590730--45590930	51	4.0	51	79	8	221	29	30	16	23	1.97
45590740--45590922	101	1.8	102	89	3	289	30	28	16	23	1.97
45591131--45591161	16	1.9	16	93	0	53	45	9	9	35	1.70
45593812--45593879	34	2.0	35	85	5	95	36	19	20	23	1.95
45596192--45596233	21	2.0	21	86	4	59	52	2	11	33	1.51
45598130--45598170	13	3.2	13	85	0	64	80	0	0	19	0.71
45599235--45599271	19	1.9	19	94	0	65	35	8	18	37	1.81
45600035--45600084	24	2.1	24	100	0	100	26	14	36	24	1.93
45603096--45603136	19	2.2	19	100	0	82	36	4	14	43	1.67
45607133--45607162	15	2.0	15	100	0	60	40	13	6	40	1.71
45608136--45608234	34	3.2	33	66	26	88	51	13	1	34	1.47
45608127--45608245	60	2.0	60	96	0	220	53	13	0	31	1.45
45608510--45608566	23	2.3	25	76	17	73	59	0	1	38	1.08
45608849--45608930	32	2.4	33	88	8	112	47	4	17	30	1.68
45611591--45611650	25	2.4	25	94	0	102	55	0	6	38	1.27
45620323--45620368	18	2.6	17	83	12	58	6	21	0	71	1.08
45622540--45622619	28	2.9	28	85	7	101	18	10	2	68	1.29
45625246--45625281	16	2.3	16	90	4	56	72	8	0	19	1.10
45627388--45627453	34	1.9	34	87	6	98	45	15	7	31	1.74
45627928--45627968	10	4.0	10	84	6	55	60	9	0	29	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45627929--45627968	21	1.9	21	89	0	62	62	7	0	30	1.23
45633668--45633739	35	2.0	37	89	8	112	62	1	1	34	1.13
45633754--45633789	5	7.0	5	93	3	54	2	36	58	2	1.27
45634442--45634492	13	3.9	13	77	10	59	33	5	23	37	1.79
45637578--45637616	16	2.4	16	95	0	69	30	25	5	38	1.78
45641589--45641635	22	2.1	22	88	7	69	65	0	0	34	0.93
45641604--45641645	18	2.3	18	83	0	57	66	2	0	30	1.04
45648507--45648560	28	2.0	27	82	10	65	66	1	3	27	1.19
45655454--45655504	24	2.1	24	85	7	68	29	0	1	68	1.00
45657034--45657076	18	2.4	18	92	0	68	20	27	9	41	1.83
45660620--45661140	126	4.1	126	87	1	731	28	16	17	37	1.92
45660620--45661140	251	2.1	253	87	1	760	28	16	17	37	1.92
45661260--45661327	29	2.4	29	92	2	111	42	11	0	45	1.40
45661195--45661334	34	4.4	32	82	10	153	44	13	0	42	1.44
45667706--45667821	54	2.2	54	84	9	159	44	6	19	28	1.76
45668629--45668653	12	2.1	12	100	0	50	24	36	24	16	1.94
45668812--45668891	9	8.9	9	92	0	124	35	26	10	28	1.89
45668893--45669004	37	3.0	37	94	0	197	47	13	6	33	1.68
45668919--45668982	20	3.3	20	70	12	62	45	15	6	32	1.71
45668902--45668999	17	5.4	17	65	13	52	51	12	5	31	1.61
45672572--45672600	13	2.2	13	100	0	58	24	6	13	55	1.63
45672586--45672679	44	2.1	45	96	2	172	20	3	34	42	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45675154--45675196	21	2.0	21	86	0	59	16	23	23	37	1.94
45678211--45678238	14	2.0	14	100	0	56	7	21	0	71	1.09
45678229--45678299	26	2.8	27	75	10	69	14	25	5	54	1.61
45681059--45681486	219	2.0	217	96	0	793	35	21	9	33	1.85
45688168--45688238	24	3.0	24	66	6	63	21	22	21	35	1.96
45688217--45688276	25	2.5	24	77	2	66	15	30	21	33	1.94
45690620--45690681	26	2.3	27	83	2	81	40	9	14	35	1.79
45690635--45690691	26	2.2	26	84	6	71	43	7	15	33	1.74
45697532--45697929	158	2.5	159	95	1	710	22	19	22	35	1.96
45699824--45699934	49	2.4	47	80	11	122	28	15	8	47	1.73
45705786--45705816	14	2.2	14	94	0	53	19	0	38	41	1.51
45705860--45705997	70	2.0	70	94	0	240	31	0	20	48	1.50
45706164--45706243	15	5.4	14	76	15	63	20	0	46	33	1.51
45706161--45706243	38	2.2	36	83	10	105	19	0	46	33	1.50
45706161--45706244	7	11.4	7	77	14	71	19	0	46	34	1.50
45706278--45706302	13	1.9	13	100	0	50	40	0	0	60	0.97
45706678--45706711	2	17.5	2	87	6	52	52	0	2	44	1.16
45706890--45706934	21	2.1	22	87	4	65	80	0	4	15	0.87
45706890--45706934	11	4.2	11	86	10	58	80	0	4	15	0.87
45706897--45706934	12	3.2	13	85	14	55	81	0	5	13	0.85
45706941--45706990	20	2.4	21	74	12	50	44	8	0	48	1.32
45709653--45709697	19	2.3	19	85	11	56	44	0	2	53	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45709759--45709879	12	10.1	12	72	19	67	50	15	0	33	1.45
45709757--45709828	21	3.3	21	76	16	74	50	13	0	36	1.43
45709780--45709846	23	2.9	23	84	4	89	50	8	0	40	1.34
45709703--45709905	96	2.1	95	93	1	343	49	15	0	35	1.45
45709707--45710115	50	7.9	49	69	20	242	47	18	0	33	1.54
45709876--45709905	12	2.6	11	90	10	51	46	10	0	43	1.37
45709732--45709925	96	2.0	97	92	3	329	48	15	0	35	1.46
45709950--45710025	16	4.6	16	79	6	89	50	22	0	27	1.50
45709922--45710267	9	40.9	9	66	21	128	45	19	1	32	1.61
45709922--45710032	25	4.4	25	73	8	100	46	23	1	27	1.62

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199