genome.fa.s20.2.7.7.80.10.50.1000.54.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Length:  58101237

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  54  of  199  ( 23844 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15737414--15737465	11	5.1	10	83	6	61	69	1	0	28	0.99
15737402--15737438	17	2.2	17	95	0	65	72	2	0	24	0.97
15739876--15739927	25	2.1	24	85	3	68	36	25	23	15	1.93
15739911--15740095	64	2.9	64	86	1	246	36	21	20	21	1.95
15745062--15745097	3	12.0	3	100	0	72	66	0	0	33	0.92
15751149--15751188	13	3.1	13	82	13	55	55	7	5	32	1.50
15751145--15751198	26	2.1	25	82	3	63	53	9	7	29	1.60
15759750--15759806	25	2.3	25	90	0	96	31	28	17	22	1.97
15759729--15759843	25	4.6	25	79	3	90	33	21	21	22	1.97
15761317--15761374	30	1.9	31	85	3	82	50	5	18	25	1.68
15765275--15765317	18	2.5	17	85	10	61	62	0	0	37	0.95
15765559--15765595	16	2.4	16	95	4	67	40	13	0	45	1.43
15765616--15765640	7	3.6	7	100	0	50	60	12	0	28	1.32
15772179--15772214	14	2.6	14	90	0	54	36	5	19	38	1.75
15772744--15772961	108	2.0	108	100	0	436	40	15	11	32	1.83
15773903--15773934	2	16.0	2	100	0	64	50	0	50	0	1.00
15777253--15777322	33	2.2	31	82	10	79	41	1	2	54	1.24
15778674--15778701	9	3.1	9	100	0	56	32	10	10	46	1.73
15781227--15781624	107	3.7	107	89	2	618	28	17	21	32	1.96
15781227--15781624	216	1.9	214	89	2	627	28	17	21	32	1.96
15786628--15786664	9	4.1	9	92	0	65	45	13	10	29	1.77
15789280--15789347	31	2.3	30	82	7	77	39	8	10	41	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15789289--15789347	31	1.9	30	86	3	82	40	10	11	37	1.76
15789753--15789805	21	2.5	21	87	6	72	30	32	11	26	1.91
15796880--15796917	16	2.4	16	90	0	58	52	0	2	44	1.14
15798733--15798785	22	2.5	21	76	14	54	13	39	22	24	1.90
15801613--15801681	21	3.3	21	72	8	59	42	18	24	14	1.88
15801658--15801752	42	2.3	42	89	7	140	45	15	20	18	1.86
15805254--15805285	5	6.4	5	96	0	55	15	0	3	81	0.82
15808092--15808131	14	2.9	14	88	0	62	32	5	17	45	1.70
15808115--15808152	20	1.9	20	88	0	58	28	5	13	52	1.61
15808100--15808166	34	1.9	35	93	3	118	31	5	13	49	1.66
15808147--15808232	33	2.6	32	73	12	84	26	10	16	46	1.79
15808613--15808696	41	2.0	41	97	0	159	35	17	13	33	1.89
15808732--15808953	111	2.0	111	99	0	435	40	15	11	32	1.83
15809921--15809951	2	15.5	2	100	0	62	51	0	48	0	1.00
15817395--15817430	19	1.9	19	88	5	56	38	2	5	52	1.39
15818686--15818716	14	2.1	15	94	5	55	41	19	0	38	1.51
15831394--15831468	32	2.3	32	81	0	87	20	20	22	37	1.94
15833869--15833914	20	2.2	21	77	11	51	28	0	4	67	1.10
15834397--15835270	311	2.8	305	76	11	765	34	13	12	39	1.83
15836074--15836130	28	2.0	28	83	6	71	36	1	5	56	1.32
15846328--15846395	35	1.9	35	85	11	95	30	5	4	58	1.41
15850100--15850149	25	2.0	25	100	0	100	16	12	24	48	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15855490--15855518	9	3.0	10	90	10	51	51	0	37	10	1.36
15857279--15857339	30	2.0	31	87	3	88	34	0	45	19	1.51
15858770--15858950	34	5.3	34	87	0	254	33	15	18	33	1.92
15859108--15859150	15	2.9	15	85	0	50	27	25	18	27	1.98
15866048--15866096	3	16.3	3	79	8	55	34	0	38	26	1.57
15867647--15867696	9	5.2	10	75	15	52	62	0	2	36	1.07
15867619--15867697	9	9.1	9	71	15	51	56	1	1	40	1.15
15867619--15867699	30	2.6	32	79	11	89	58	1	1	39	1.14
15867874--15867917	22	2.1	21	91	8	72	27	0	4	68	1.09
15867874--15867926	20	2.6	21	85	11	67	28	0	3	67	1.07
15867874--15867923	22	2.5	19	81	15	57	28	0	4	68	1.08
15868700--15868753	19	3.1	16	75	17	54	70	7	0	22	1.12
15868709--15868766	19	3.1	18	82	5	62	68	5	0	25	1.10
15871587--15871713	34	3.7	34	86	2	148	34	10	13	41	1.78
15874522--15874573	24	2.4	22	74	20	56	5	13	15	65	1.44
15875420--15875547	26	4.9	26	87	1	159	38	17	17	26	1.92
15882878--15882992	52	2.2	52	81	9	137	35	22	15	26	1.94
15882878--15882996	26	4.6	26	79	12	120	35	21	16	26	1.95
15882909--15883046	26	5.1	27	77	13	115	34	21	17	26	1.95
15885709--15885756	21	2.3	21	81	0	60	39	18	39	2	1.63
15887003--15887061	31	1.9	32	86	6	86	30	0	5	64	1.15
15890179--15890233	27	2.0	27	92	0	92	52	7	10	29	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15914587--15915035	130	3.5	130	84	6	590	30	17	14	37	1.90
15915035--15915060	8	3.2	8	100	0	52	11	0	26	61	1.30
15916188--15916236	24	2.0	24	96	0	89	42	26	12	18	1.85
15916829--15916908	39	2.1	39	100	0	160	23	35	12	28	1.91
15920615--15920662	14	3.5	13	80	11	51	77	2	2	18	0.97
15929090--15929167	39	2.0	40	97	2	149	48	5	7	38	1.54
15929283--15929325	22	2.0	22	90	4	70	16	2	30	51	1.57
15929460--15929489	15	2.0	15	93	0	51	63	0	3	33	1.11
15929695--15929732	20	1.9	20	94	0	67	34	0	7	57	1.28
15932295--15932480	30	6.1	30	73	10	162	43	11	2	43	1.52
15932247--15932345	37	2.6	37	77	6	108	45	9	3	42	1.51
15932574--15932903	16	20.1	16	66	21	125	46	19	3	30	1.67
15932493--15932907	25	16.6	25	72	15	145	45	18	3	31	1.68
15932631--15932903	41	6.4	41	69	15	135	47	17	4	30	1.67
15932698--15932851	83	1.9	83	94	0	272	48	16	5	29	1.70
15932673--15932877	108	1.9	107	84	4	277	46	18	5	29	1.72
15932494--15932902	66	6.0	66	76	12	294	45	18	3	31	1.68
15932837--15932915	25	3.2	25	81	10	92	46	16	2	34	1.60
15938816--15939039	43	5.2	43	80	4	236	28	20	27	22	1.99
15941581--15941640	28	2.2	27	81	3	66	16	15	5	63	1.47
15942624--15942688	32	2.0	32	100	0	130	35	9	9	46	1.68
15942656--15951856	708	13.0	709	91	1	14760	35	16	13	33	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15951133--15951201	34	2.0	34	85	0	93	31	8	10	49	1.67
15960215--15960277	13	4.8	13	79	16	58	77	1	15	4	1.01
15960215--15960277	14	4.7	14	79	15	53	77	1	15	4	1.01
15963517--15964466	50	19.0	50	69	7	453	23	20	22	34	1.97
15963470--15964466	100	10.0	100	90	0	1510	23	20	21	34	1.97
15964618--15964827	44	4.8	44	80	0	251	32	27	13	26	1.94
15964618--15964829	88	2.4	88	92	0	363	32	27	13	27	1.94
15966202--15966290	46	2.0	45	88	6	135	14	24	20	40	1.90
15967166--15967278	15	7.3	15	70	19	54	9	4	7	77	1.10
15967146--15967248	36	2.9	33	80	15	118	7	4	6	80	1.01
15967140--15967217	24	3.2	24	74	12	68	7	6	5	80	1.01
15967151--15967244	35	2.6	35	80	15	104	7	4	6	81	0.96
15967178--15967244	1	67.0	1	75	0	53	4	4	4	86	0.78
15967166--15967248	15	5.5	15	74	20	66	7	3	7	81	0.96
15968011--15968069	25	2.3	25	82	8	66	59	5	13	22	1.54
15969361--15969400	21	1.9	21	84	0	53	22	30	0	47	1.52
15971674--15971836	43	3.9	42	75	11	136	25	15	25	33	1.95
15971997--15972028	16	1.9	17	93	6	57	40	0	21	37	1.54
15977901--15977935	18	2.0	18	88	5	54	17	0	8	74	1.06
15981085--15981137	26	2.0	26	100	0	106	26	3	15	54	1.57
15983209--15983260	27	1.9	27	96	0	95	26	26	13	32	1.94
15983317--15983450	68	2.0	68	83	2	171	22	22	15	39	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15985227--15985369	70	2.0	70	98	0	277	23	13	7	54	1.65
15986861--15986929	28	2.3	30	87	7	97	40	0	5	53	1.25
15987879--15987977	23	4.4	23	80	2	112	22	19	20	38	1.94
15992556--15992608	24	2.2	25	82	3	63	32	22	26	18	1.97
15994514--15994659	61	2.4	61	91	1	238	50	6	0	43	1.32
15994548--15994649	30	3.4	30	78	8	134	49	5	0	45	1.26
15997362--15997467	25	4.2	25	81	3	115	30	7	21	40	1.81
16002532--16002585	16	3.4	16	89	0	81	37	1	33	27	1.68
16002564--16002661	44	2.2	44	85	5	135	33	3	26	36	1.72
16002796--16002838	16	2.8	16	82	13	54	53	2	0	44	1.13

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199