genome.fa.s20.2.7.7.80.10.50.1000.56.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Length:  58101237

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  56  of  199  ( 23844 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16276303--16276342	20	2.0	20	90	0	62	27	10	12	50	1.72
16276288--16276354	34	1.9	35	90	3	109	31	8	13	46	1.74
16276282--16276358	14	5.0	15	71	20	52	32	9	15	42	1.78
16278151--16278217	33	2.0	33	91	0	107	38	1	44	14	1.55
16278608--16278673	33	2.0	33	90	0	105	37	1	45	15	1.55
16277915--16278805	456	2.0	444	91	3	1462	38	15	22	23	1.92
16279561--16279606	11	4.2	11	86	8	58	26	23	0	50	1.50
16279561--16279603	10	4.0	10	82	11	50	25	25	0	48	1.51
16281440--16281482	18	2.4	18	84	0	50	20	25	9	44	1.81
16281862--16282031	49	3.5	49	93	0	286	42	2	8	45	1.50
16285128--16285414	125	2.3	124	90	1	459	30	20	17	31	1.95
16285581--16285621	21	1.9	22	85	5	57	51	34	0	14	1.43
16285976--16286025	24	2.1	24	100	0	100	40	8	4	48	1.51
16290052--16290098	22	2.1	22	81	14	53	6	12	14	65	1.44
16295121--16295147	11	2.5	11	100	0	54	22	7	18	51	1.70
16296439--16296492	26	2.1	26	96	0	99	44	7	14	33	1.73
16296575--16297027	120	3.8	120	94	1	757	42	2	6	48	1.41
16296688--16296995	61	5.1	61	70	17	275	43	1	6	48	1.38
16296740--16296791	15	3.6	15	80	12	56	44	0	1	53	1.11
16296727--16297027	59	5.0	59	70	16	269	42	1	5	50	1.34
16296860--16296911	15	3.6	15	80	12	56	44	0	1	53	1.11
16296989--16297030	15	2.7	16	82	14	52	45	0	2	52	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16296980--16297021	15	2.9	15	82	10	52	47	0	0	52	1.00
16297158--16297262	44	2.5	40	76	15	113	31	29	4	34	1.78
16297156--16297265	45	2.6	44	81	8	131	31	29	5	33	1.80
16297244--16297313	16	4.4	16	88	0	104	30	35	1	32	1.67
16297244--16297313	32	2.2	32	94	0	122	30	35	1	32	1.67
16298196--16298410	107	2.0	107	100	0	430	40	15	11	33	1.83
16298665--16298867	67	3.1	65	76	11	227	43	16	8	31	1.77
16298664--16298861	61	3.2	60	78	8	198	43	16	8	30	1.78
16300319--16300570	126	2.0	126	96	0	468	46	13	10	29	1.78
16302561--16302611	15	3.5	15	81	13	70	29	9	0	60	1.28
16304804--16304848	23	2.0	23	81	0	54	20	2	15	62	1.43
16305131--16305211	36	2.2	38	77	14	91	40	8	1	49	1.41
16305271--16305299	15	1.9	15	100	0	58	13	0	0	86	0.58
16305308--16305350	23	1.9	22	90	4	68	34	9	2	53	1.46
16311366--16311503	56	2.4	57	84	4	172	44	0	3	50	1.24
16312938--16312972	17	2.1	17	88	0	52	60	5	2	31	1.35
16319324--16319357	3	11.0	3	93	6	59	67	0	0	32	0.91
16323670--16323703	3	11.3	3	100	0	68	0	32	0	67	0.91
16327533--16327558	2	13.0	2	100	0	52	50	0	0	50	1.00
16329639--16329802	78	2.1	78	97	0	310	43	17	9	28	1.81
16331105--16331213	25	4.4	24	74	5	92	34	22	22	20	1.96
16331090--16331273	50	3.7	49	73	13	137	33	21	22	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16331181--16331244	24	2.7	24	80	9	69	37	20	25	17	1.93
16331120--16331273	25	6.3	24	73	18	86	33	21	23	22	1.98
16331624--16331665	21	2.0	21	85	0	57	42	23	0	33	1.55
16334256--16334337	26	3.3	26	84	5	107	31	23	28	17	1.96
16334267--16334346	26	3.1	26	85	5	101	31	21	31	16	1.95
16334410--16334481	24	3.0	23	67	16	56	34	20	25	19	1.96
16342316--16342352	19	2.1	19	90	10	60	21	0	0	78	0.75
16342319--16342357	19	2.1	19	85	4	53	25	0	2	71	0.98
16342338--16342398	24	2.5	24	76	7	61	32	0	4	62	1.17
16342291--16342454	17	9.3	17	66	21	70	30	1	3	65	1.16
16347029--16347135	43	2.6	41	80	7	126	29	27	17	25	1.98
16348594--16348657	30	2.1	30	85	0	83	34	10	20	34	1.88
16354395--16354438	23	1.9	23	81	9	54	40	11	0	47	1.39
16362748--16362781	17	2.0	17	88	0	50	41	14	2	41	1.61
16367131--16367164	15	2.3	15	100	0	68	32	17	5	44	1.73
16369052--16369119	35	2.0	34	82	8	84	41	8	2	47	1.50
16372230--16372272	22	2.0	23	86	9	63	53	6	13	25	1.65
16388090--16388267	43	4.1	43	82	5	173	24	17	18	38	1.92
16388162--16388284	43	2.9	42	85	7	122	22	21	19	35	1.96
16391075--16391117	18	2.4	18	88	0	59	41	44	2	11	1.53
16391221--16391269	9	5.4	9	90	0	80	26	10	20	42	1.84
16397210--16397246	7	5.3	7	100	0	74	59	0	0	40	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16419906--16420170	103	2.6	104	91	0	424	29	29	20	20	1.98
16428402--16428461	30	2.0	31	83	9	79	41	0	38	20	1.52
16428675--16428711	9	4.1	9	92	0	65	29	10	13	45	1.77
16428764--16428794	9	3.4	9	90	0	53	38	22	12	25	1.90
16432948--16432990	19	2.3	19	80	8	52	48	0	13	37	1.43
16447686--16447753	34	2.0	35	85	2	93	33	8	14	42	1.77
16449203--16449229	14	1.9	14	100	0	54	85	0	0	14	0.61
16449776--16449843	22	3.2	22	69	12	61	41	1	4	52	1.30
16449754--16449858	42	2.6	39	78	12	115	42	1	2	52	1.27
16449754--16449866	40	2.8	39	78	12	122	40	2	4	52	1.36
16450078--16450110	16	2.1	16	88	5	50	30	0	0	69	0.88
16454918--16454970	24	2.3	23	81	9	63	26	7	16	49	1.73
16456784--16456845	28	2.2	28	82	0	70	45	3	19	32	1.66
16456910--16457113	59	3.4	59	91	0	327	52	7	4	34	1.50
16459031--16459091	19	3.3	18	81	9	61	65	0	1	32	1.02
16461243--16461308	28	2.4	28	89	5	98	39	7	0	53	1.30
16461703--16461768	19	3.5	19	79	4	89	37	10	1	50	1.47
16461994--16462052	19	3.2	19	82	4	84	49	0	13	37	1.43
16489963--16490112	58	2.5	62	81	7	170	40	14	15	30	1.86
16491289--16491354	32	2.1	32	100	0	132	31	34	12	21	1.90
16496776--16496817	18	2.2	20	83	12	52	28	0	2	69	1.01
16500403--16500652	126	2.0	126	95	0	455	39	15	17	28	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16502562--16502785	104	2.2	104	92	1	369	31	31	18	17	1.95
16503114--16503177	30	2.2	29	81	10	76	29	28	6	35	1.82
16503121--16503177	30	1.9	30	85	3	80	29	24	7	38	1.82
16504328--16504376	25	2.0	25	100	0	98	32	4	4	59	1.35
16504329--16504385	25	2.3	25	90	6	89	33	7	3	56	1.43
16509970--16510011	18	2.3	18	84	8	50	47	0	2	50	1.14
16510341--16510382	18	2.2	20	80	16	54	42	2	7	47	1.43
16510572--16510662	28	3.1	27	74	22	94	41	7	3	47	1.48
16510533--16510662	60	2.2	60	91	0	206	43	9	3	44	1.51
16510555--16510650	28	3.2	30	73	22	103	42	7	2	47	1.42
16514194--16514229	9	3.6	10	88	11	56	58	0	0	41	0.98
16514362--16514397	16	2.2	16	100	0	72	50	5	5	38	1.49
16514443--16514471	8	3.6	8	100	0	58	51	10	0	37	1.36
16516017--16517657	46	35.7	46	90	1	2193	30	27	16	25	1.97
16519057--16519114	5	12.4	5	74	18	54	0	17	1	81	0.78
16519059--16519097	20	2.0	20	89	0	60	0	20	2	76	0.90
16519061--16519128	12	5.3	12	80	16	59	0	14	2	82	0.79
16519063--16519125	28	2.4	27	89	7	94	0	15	3	80	0.83
16519079--16519129	14	3.9	14	77	15	63	0	11	5	82	0.83
16523682--16523721	11	3.5	11	84	15	55	57	0	0	42	0.98
16523849--16523884	16	2.2	16	95	0	63	52	2	5	38	1.39
16523930--16523958	8	3.6	8	100	0	58	51	10	0	37	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16523936--16523990	28	1.9	29	82	17	71	54	7	3	34	1.46
16524054--16524091	3	12.7	3	100	0	76	68	0	0	31	0.90
16524797--16524825	12	2.5	12	94	5	51	82	0	17	0	0.66
16529921--16530029	52	2.1	52	98	0	209	53	10	13	22	1.70
16530414--16530463	24	2.1	24	81	7	57	64	8	0	28	1.22
16538535--16538587	24	2.2	25	77	16	58	45	0	1	52	1.11
16538657--16538708	22	2.3	21	78	15	52	36	3	3	55	1.36
16544276--16544326	13	3.9	13	89	0	84	41	27	7	23	1.82
16546846--16546913	30	2.3	30	92	0	109	41	5	4	48	1.47
16556101--16556148	24	2.0	25	87	4	71	64	6	10	18	1.45

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199