genome.fa.s20.2.7.7.80.10.50.1000.113.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Length:  58101237

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  113  of  199  ( 23844 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32111768--32112086	173	1.8	173	85	1	451	21	24	30	24	1.99
32112564--32112690	62	2.0	62	86	3	175	23	22	33	20	1.97
32117846--32117886	18	2.3	18	87	4	57	41	14	4	39	1.67
32118557--32118621	22	3.0	22	76	0	67	44	16	21	16	1.86
32118612--32118671	32	1.9	32	89	3	95	38	11	23	26	1.89
32118612--32118690	32	2.5	32	83	6	81	41	15	20	22	1.89
32118733--32118795	27	2.4	27	80	15	69	34	20	23	20	1.96
32118858--32118916	24	2.5	24	88	0	82	49	23	6	20	1.73
32118963--32119136	53	3.3	50	78	15	163	25	25	17	31	1.97
32118962--32119128	27	6.3	27	77	6	162	25	23	18	32	1.97
32119138--32119272	27	4.6	28	77	16	141	26	14	18	40	1.90
32125572--32125627	29	1.9	29	92	0	94	44	26	8	19	1.80
32127954--32128029	23	3.3	23	86	0	107	30	25	21	23	1.99
32131027--32131102	23	3.3	23	84	0	107	30	25	21	23	1.99
32148588--32148696	7	15.6	7	76	3	78	45	1	22	30	1.62
32148589--32148692	21	5.0	21	80	2	93	46	1	20	31	1.62
32150186--32150234	18	2.7	18	80	0	62	38	16	2	42	1.60
32162861--32162903	5	8.6	5	78	0	50	39	2	18	39	1.64
32162861--32162903	20	2.2	20	91	0	68	39	2	18	39	1.64
32165781--32165834	25	2.2	25	90	6	83	29	3	18	48	1.65
32167510--32167649	74	1.9	74	92	0	235	32	11	27	28	1.91
32181587--32181647	32	1.9	32	100	0	122	24	3	19	52	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32192996--32193059	6	10.3	6	73	17	51	73	3	20	3	1.11
32192996--32193054	25	2.4	25	80	11	68	72	3	20	3	1.13
32193286--32193332	24	2.0	24	84	16	62	34	0	14	51	1.43
32198134--32198292	43	3.7	42	81	4	167	30	26	18	24	1.98
32210227--32210409	50	3.5	50	82	4	186	24	28	19	27	1.99
32211897--32212074	27	6.6	27	83	3	205	29	28	15	26	1.96
32211918--32212073	82	1.9	81	89	3	242	28	28	16	26	1.97
32219975--32220152	27	6.6	27	84	3	205	30	28	15	26	1.96
32219996--32220151	82	1.9	81	89	3	242	30	28	15	26	1.96
32224883--32224961	37	2.1	37	88	4	115	25	30	18	25	1.98
32225080--32225617	47	11.4	47	94	0	923	28	29	9	32	1.88
32233847--32234086	120	2.0	120	95	0	435	32	28	17	21	1.96
32239180--32239828	343	1.9	343	90	1	1034	23	23	20	32	1.98
32240156--32240203	18	2.7	18	78	9	62	39	16	2	41	1.60
32245806--32245841	16	2.2	16	95	0	63	41	5	25	27	1.77
32245823--32245911	45	2.0	44	91	6	144	32	4	25	37	1.76
32246005--32246157	55	2.8	54	76	13	136	55	3	1	39	1.24
32246084--32246194	20	5.8	20	65	23	60	58	2	0	37	1.18
32255845--32255896	18	2.7	19	77	14	54	40	5	19	34	1.75
32256507--32256576	31	2.3	31	83	16	101	30	0	5	64	1.17
32256799--32256884	35	2.5	35	90	0	136	25	26	18	29	1.98
32258065--32258112	25	1.9	25	83	8	62	56	16	6	20	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32258964--32259138	9	19.4	9	84	2	208	39	23	12	24	1.89
32259240--32259283	18	2.4	18	88	0	61	13	2	43	40	1.57
32262748--32262790	19	2.4	17	78	14	50	37	11	2	48	1.52
32262753--32262790	19	2.0	19	94	0	67	34	10	2	52	1.50
32263527--32263563	19	1.9	19	94	0	65	59	0	0	40	0.97
32263527--32263573	19	2.5	19	85	0	58	53	2	2	42	1.25
32267895--32267964	24	3.0	23	78	2	68	25	8	18	47	1.77
32292258--32292347	20	4.2	20	76	15	74	10	25	14	50	1.74
32292313--32292386	30	2.5	29	75	16	71	9	21	14	54	1.69
32292314--32292386	20	3.7	20	74	7	53	9	21	15	53	1.70
32300325--32300485	27	6.0	27	82	0	187	22	18	18	40	1.91
32300323--32300486	54	3.0	54	81	0	211	23	17	17	40	1.90
32300336--32300491	81	1.9	81	88	0	231	22	17	17	42	1.89
32302404--32302479	22	3.4	22	83	1	71	46	32	5	15	1.69
32302419--32302560	23	6.2	22	72	13	92	40	35	5	18	1.74
32302419--32302560	48	3.1	45	79	15	155	40	35	5	18	1.74
32302419--32302631	93	2.3	94	83	4	263	42	33	4	19	1.72
32302586--32302632	23	2.1	22	92	4	76	42	34	2	21	1.65
32312917--32313093	43	4.1	43	81	2	221	23	18	27	31	1.97
32312929--32313094	86	1.9	86	88	0	251	24	18	27	29	1.98
32313984--32314029	23	2.0	23	86	0	65	41	26	4	28	1.74
32322688--32322722	18	1.9	18	88	0	52	8	22	8	60	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32327696--32327754	18	3.2	19	77	17	61	64	3	8	23	1.37
32327701--32327755	20	2.8	19	76	10	58	67	1	7	23	1.26
32327964--32327995	17	1.9	16	93	6	55	53	3	0	43	1.16
32328207--32328259	27	2.0	27	88	7	81	64	5	5	24	1.38
32336838--32336868	13	2.4	13	100	0	62	6	61	0	32	1.21
32336820--32336877	18	3.5	17	75	22	61	3	60	0	36	1.14
32336819--32336877	31	1.9	31	92	0	100	3	61	0	35	1.13
32339375--32339451	14	5.0	15	71	20	52	41	15	10	32	1.81
32343665--32343727	28	2.3	27	83	8	81	38	1	3	57	1.24
32344177--32344412	113	2.1	113	92	1	402	25	24	27	23	2.00
32344340--32344453	41	2.8	41	91	0	183	19	19	33	28	1.96
32344224--32344566	154	2.2	154	92	1	553	23	21	28	26	1.99
32344385--32344743	114	3.1	114	87	1	506	23	21	26	28	1.99
32344663--32344802	74	1.9	73	89	1	217	26	22	22	28	1.99
32344539--32344929	188	2.1	188	85	1	534	25	22	23	28	1.99
32344734--32344990	115	2.2	114	86	0	352	27	22	23	26	2.00
32349289--32349339	21	2.4	21	83	0	57	35	13	45	5	1.68
32349249--32349410	87	1.9	87	90	0	261	40	17	28	14	1.88
32349261--32349451	87	2.2	86	83	5	224	41	17	28	12	1.86
32349841--32349866	13	2.0	13	100	0	52	46	23	15	15	1.83
32349797--32349909	56	2.0	57	89	1	174	33	21	24	20	1.97
32349854--32349946	43	2.2	43	94	0	159	33	19	23	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32350106--32350215	53	2.1	53	100	0	220	32	15	9	42	1.78
32362527--32362553	13	2.1	13	100	0	54	29	0	7	62	1.22
32362652--32362943	50	5.9	50	83	4	331	26	22	30	21	1.99
32371424--32371505	40	2.0	40	100	0	164	37	12	17	32	1.86
32374260--32374410	41	3.6	41	83	6	178	29	13	19	36	1.91
32375840--32375893	22	2.5	22	87	6	74	18	22	16	42	1.89
32378360--32378401	17	2.5	17	96	3	77	35	9	0	54	1.33
32386897--32386939	4	10.5	4	85	5	59	69	0	0	30	0.88
32386899--32386939	21	2.0	21	90	0	64	70	0	0	29	0.87
32389545--32389735	39	4.8	39	82	9	217	36	2	0	61	1.12
32389652--32389676	10	2.5	10	100	0	50	20	0	0	80	0.72
32389593--32389735	11	13.9	11	68	21	78	37	1	0	60	1.11
32389631--32389728	52	1.9	51	91	2	160	36	1	1	61	1.10
32397414--32397468	21	2.7	21	78	13	60	40	9	3	47	1.53
32397419--32397482	22	2.9	22	71	13	60	35	9	3	51	1.50
32401632--32401686	21	2.7	21	78	13	60	40	9	1	49	1.45
32403158--32403194	18	2.1	18	100	0	74	54	5	10	29	1.57
32403514--32403540	5	5.4	5	100	0	54	62	18	0	18	1.32
32404483--32404528	24	1.9	24	82	8	58	30	2	4	63	1.26
32404488--32404530	19	2.3	18	76	7	50	27	2	2	67	1.15
32416792--32417678	44	20.6	43	71	13	440	28	20	23	27	1.99
32417473--32417635	89	1.8	88	82	12	208	27	22	25	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32416792--32417700	217	4.2	217	90	2	1409	28	21	22	27	1.99
32418070--32418106	5	7.4	5	100	0	74	62	18	0	18	1.34
32422565--32422701	27	5.1	26	79	5	139	33	13	27	26	1.93
32422565--32422711	54	2.7	54	78	2	170	32	13	27	25	1.94
32439332--32439462	40	3.3	40	86	4	160	25	26	22	25	2.00
32441243--32441281	20	2.0	20	94	0	69	25	7	20	46	1.77
32452322--32452408	42	2.1	42	91	0	138	22	25	25	26	2.00
32458985--32459119	65	2.1	65	97	0	252	39	5	13	42	1.66
32460090--32460352	109	2.4	110	87	1	379	34	18	14	31	1.92
32460668--32460709	16	2.6	17	81	7	52	52	4	4	38	1.44

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199