genome.fa.s20.2.7.7.80.10.50.1000.125.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Length:  58101237

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  125  of  199  ( 23844 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36012971--36013003	14	2.4	14	94	0	57	42	6	0	51	1.26
36015997--36016216	47	4.9	43	67	19	135	46	3	3	46	1.36
36015918--36016216	91	3.3	91	96	0	526	45	3	4	46	1.38
36016232--36016649	120	3.5	120	94	1	721	43	2	5	49	1.37
36016353--36016387	18	2.0	17	88	5	52	45	0	0	54	0.99
36016390--36016579	66	3.1	65	68	20	197	43	2	6	47	1.42
36016486--36016532	16	3.0	16	78	12	53	46	0	2	51	1.13
36016606--36016647	15	2.7	16	82	14	52	45	0	2	52	1.13
36016597--36016638	15	2.9	15	82	10	52	47	0	0	52	1.00
36016868--36016914	16	2.9	16	90	0	76	25	36	2	36	1.68
36025564--36025610	2	23.5	2	100	0	94	0	48	0	51	1.00
36029508--36029542	6	5.8	6	100	0	70	17	0	68	14	1.21
36034194--36034287	25	3.8	25	69	10	77	25	19	23	31	1.98
36036502--36036558	25	2.3	25	90	0	87	21	19	22	36	1.95
36037867--36037909	21	2.0	21	90	0	68	11	30	20	37	1.89
36045241--36045813	296	2.0	279	88	7	853	34	11	23	31	1.90
36050434--36050476	21	2.0	21	95	0	77	13	30	18	37	1.90
36051705--36052088	50	7.7	50	82	2	380	21	17	26	35	1.95
36051705--36052036	25	13.3	25	67	3	157	20	17	25	36	1.94
36054412--36054539	27	4.8	26	69	15	73	35	18	3	42	1.66
36054408--36054596	40	4.7	38	79	11	182	34	17	3	43	1.67
36054408--36054605	80	2.5	79	87	2	281	35	17	3	43	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36054408--36054539	13	9.9	13	68	14	81	34	19	3	42	1.67
36059146--36059184	21	2.0	20	90	10	62	20	7	15	56	1.63
36059758--36059807	19	2.7	18	80	17	57	46	14	10	30	1.77
36061063--36061101	19	2.1	19	95	0	69	0	46	10	43	1.37
36061104--36061130	7	3.9	7	100	0	54	11	44	0	44	1.39
36064232--36064286	24	2.2	26	81	12	71	45	0	1	52	1.11
36064427--36064517	45	2.0	44	87	2	128	34	28	5	31	1.80
36064498--36064549	16	3.2	16	94	0	86	34	36	0	28	1.58
36065854--36065903	16	3.1	16	79	0	55	16	10	6	68	1.38
36071035--36071076	22	1.9	22	100	0	84	26	14	14	45	1.83
36071393--36071427	14	2.6	14	90	4	54	8	0	5	85	0.73
36078892--36078968	36	2.1	36	90	4	120	61	2	24	11	1.43
36080438--36080561	66	1.9	66	81	3	151	27	25	19	28	1.99
36104512--36104538	5	5.4	5	100	0	54	0	0	18	81	0.69
36111274--36111410	68	2.0	68	95	2	249	42	13	20	23	1.88
36113182--36113214	17	2.0	17	88	5	50	15	0	21	63	1.30
36115664--36115742	39	2.0	39	90	0	122	48	13	11	26	1.77
36118983--36119061	39	2.0	39	90	0	122	45	12	11	30	1.77
36126670--36126708	20	2.0	20	90	9	64	66	0	0	33	0.92
36126892--36126962	9	7.7	9	74	12	63	35	2	39	22	1.69
36127489--36127549	20	3.1	19	83	9	61	68	4	1	24	1.18
36128273--36128299	2	13.5	2	100	0	54	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36133536--36133564	13	2.1	14	93	6	51	58	27	0	13	1.36
36138122--36138197	27	2.8	27	84	9	93	32	10	23	32	1.89
36138299--36138349	26	2.0	26	84	7	68	37	5	23	33	1.79
36149873--36150061	87	2.2	87	89	0	288	39	21	15	23	1.92
36149822--36150063	29	8.4	29	78	0	243	36	21	16	25	1.94
36161329--36161500	40	4.3	40	88	2	222	25	27	21	25	1.99
36169217--36169477	40	6.6	40	86	3	294	25	27	21	24	1.99
36169409--36169486	40	1.9	41	82	10	97	26	28	21	23	1.99
36184562--36184718	28	5.5	28	72	12	88	29	29	17	22	1.97
36184618--36184718	29	3.5	29	80	8	116	29	30	16	22	1.96
36184590--36184750	57	2.8	57	88	1	225	29	28	19	22	1.98
36184756--36184911	40	3.9	40	89	2	235	27	28	21	22	1.99
36192233--36192490	80	3.2	81	88	4	364	39	20	9	29	1.85
36192233--36192490	27	9.7	27	78	11	246	39	20	9	29	1.85
36192474--36192840	27	13.6	27	82	1	430	37	18	17	25	1.93
36192393--36192830	54	8.1	54	80	8	353	37	18	16	27	1.92
36192284--36192858	81	7.1	81	81	6	370	38	18	15	27	1.91
36192443--36192858	27	15.4	27	82	3	318	37	18	17	26	1.93
36193082--36193164	27	3.1	26	87	5	112	19	21	21	37	1.94
36193377--36193449	27	2.7	27	85	4	85	21	24	17	35	1.95
36193630--36193665	18	1.9	19	88	5	56	16	16	19	47	1.83
36195541--36195717	27	6.6	27	84	2	221	36	16	20	26	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36195946--36196024	27	3.0	26	87	5	104	20	21	21	36	1.95
36196034--36196234	97	2.1	98	88	1	305	17	18	29	34	1.94
36196172--36196212	20	2.0	20	85	0	55	12	14	31	41	1.83
36196256--36196328	27	2.7	27	87	4	94	20	24	19	35	1.95
36197409--36197437	3	10.0	3	92	7	51	31	0	0	68	0.89
36198785--36198939	43	3.6	43	93	3	267	29	31	26	12	1.92
36198932--36199115	38	4.8	38	90	2	264	29	25	22	21	1.99
36201827--36201896	28	2.5	28	88	4	97	28	28	15	27	1.96
36207466--36207495	15	1.9	16	93	6	53	53	6	20	20	1.67
36213493--36214092	47	12.6	49	92	4	957	33	8	28	29	1.86
36213493--36214092	96	6.3	96	94	2	964	33	8	28	29	1.86
36216254--36216430	55	3.2	55	89	0	246	31	29	12	26	1.93
36216254--36216405	27	5.6	27	92	3	232	30	28	13	27	1.94
36218629--36218735	56	1.9	57	88	1	162	41	6	20	31	1.78
36219393--36219574	93	2.0	91	82	5	222	38	17	12	32	1.86
36226087--36226141	21	2.5	21	85	5	65	58	9	3	29	1.46
36230150--36230325	46	3.8	44	80	10	192	21	20	28	28	1.98
36230146--36230317	93	1.8	93	92	0	290	21	20	29	27	1.98
36235328--36235366	19	2.1	19	85	0	51	71	7	5	15	1.26
36235819--36235919	27	3.6	28	77	9	107	31	22	24	20	1.98
36236025--36236089	28	2.3	28	94	0	112	30	7	27	33	1.85
36241810--36242027	79	2.7	79	80	8	221	25	26	22	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36241824--36242027	40	5.1	40	78	8	211	25	26	22	25	2.00
36249924--36250108	79	2.3	82	84	7	238	25	27	22	24	2.00
36249905--36250108	40	5.1	40	82	8	238	25	27	22	25	2.00
36262139--36262250	39	2.8	40	90	2	165	28	26	19	25	1.99
36269754--36269924	40	4.3	40	88	3	220	25	28	21	25	1.99
36269754--36269978	80	2.8	79	80	7	213	26	27	20	25	1.99
36273783--36273840	29	2.0	30	93	3	100	36	17	22	24	1.95
36277845--36277985	75	1.9	75	84	0	192	24	26	24	24	2.00
36278793--36278844	21	2.5	21	80	0	59	28	9	30	30	1.89
36282575--36282604	7	4.3	7	100	0	60	30	0	26	43	1.55
36292159--36292250	29	3.2	29	72	7	80	21	14	25	39	1.91
36297203--36297240	19	2.0	19	94	0	67	31	28	5	34	1.80
36297224--36297248	13	1.9	13	100	0	50	32	24	8	36	1.84
36302625--36302654	3	10.0	3	100	0	60	33	0	0	66	0.92
36303960--36304015	22	2.5	22	88	2	76	30	26	0	42	1.56
36303987--36304090	51	2.0	51	94	0	181	29	26	0	43	1.55
36304242--36304297	26	2.2	26	78	12	62	33	0	5	60	1.19
36305235--36305259	7	3.6	7	100	0	50	28	0	12	60	1.32
36305910--36305944	18	1.9	18	94	0	61	25	31	8	34	1.86
36306367--36306453	44	2.0	45	88	6	133	39	0	11	49	1.39
36306479--36306584	30	3.7	30	73	18	109	50	24	0	24	1.49
36306461--36307003	51	11.0	54	74	16	137	46	25	1	26	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36306514--36307812	23	54.4	23	76	17	1151	46	24	1	28	1.61
36306539--36307847	118	11.1	115	77	15	1119	45	24	1	28	1.62
36306530--36307847	169	7.9	167	76	17	974	45	24	1	28	1.62
36307183--36307293	56	2.0	57	92	1	188	45	28	0	24	1.59
36306826--36307847	120	8.5	119	78	15	767	45	23	1	28	1.62
36307800--36307842	23	2.0	21	86	9	59	44	27	2	25	1.66
36307838--36308061	116	1.9	116	91	0	367	38	8	9	43	1.67
36308037--36308078	17	2.4	18	80	4	50	42	9	2	45	1.49
36311037--36311389	126	2.8	126	87	3	523	33	21	15	29	1.94
36312865--36312890	6	4.3	6	100	0	52	0	15	34	50	1.45

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199