genome.fa.s20.2.7.7.80.10.50.1000.151.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Length:  58101237

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  151  of  199  ( 23844 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44738426--44738468	10	4.7	9	81	16	52	39	2	0	58	1.11
44738418--44738471	15	3.2	16	78	19	56	46	1	0	51	1.11
44748101--44748342	50	4.7	50	86	5	297	26	23	28	20	1.99
44748101--44748350	100	2.4	104	86	5	346	26	23	28	21	1.99
44750001--44750063	20	3.1	21	80	11	69	41	19	28	11	1.85
44751336--44751374	21	1.9	20	84	5	51	56	5	25	12	1.57
44756252--44756290	14	2.8	14	80	0	51	35	10	20	33	1.86
44756860--44756895	18	1.9	18	88	5	54	58	2	0	38	1.13
44758786--44758826	21	2.0	21	85	0	55	31	0	9	58	1.31
44761443--44761490	25	1.9	25	91	0	78	22	20	22	33	1.97
44761517--44761896	188	2.0	188	92	0	634	33	10	23	32	1.89
44762025--44762054	15	2.0	15	100	0	60	33	20	26	20	1.97
44767180--44767298	23	5.2	23	78	0	130	32	26	16	24	1.96
44767187--44767298	46	2.4	46	87	0	152	33	25	16	24	1.96
44767527--44767565	18	2.2	17	86	13	53	46	20	0	33	1.51
44770798--44770841	12	3.7	12	84	0	52	18	2	6	72	1.17
44770798--44770841	18	2.4	18	88	0	61	18	2	6	72	1.17
44771239--44771288	20	2.4	21	90	10	84	12	0	28	60	1.32
44784278--44784461	38	4.7	37	70	17	131	43	1	4	51	1.29
44784287--44784478	56	3.3	55	73	19	199	42	1	3	52	1.25
44784315--44784498	56	3.0	65	69	19	203	43	0	3	52	1.23
44784260--44784498	120	2.0	120	99	0	469	43	0	4	51	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44784423--44784452	15	1.9	16	93	6	53	43	0	6	50	1.28
44784711--44784742	15	2.1	16	94	5	57	21	31	6	40	1.78
44788418--44788451	16	2.1	16	88	5	50	8	0	14	76	1.01
44795790--44796001	29	7.2	28	74	10	167	23	25	13	37	1.91
44795790--44796001	59	3.6	58	85	3	264	23	25	13	37	1.91
44803768--44803832	32	2.0	32	93	0	112	35	12	10	41	1.78
44804207--44804495	29	9.9	29	76	4	224	23	23	13	39	1.90
44804207--44804477	59	4.6	59	81	4	273	22	23	14	39	1.91
44808420--44808613	85	2.3	86	82	5	241	34	24	17	23	1.96
44808422--44808677	43	6.0	43	81	5	227	31	23	17	26	1.97
44808422--44808677	85	3.0	84	80	6	203	31	23	17	26	1.97
44813360--44813492	7	18.7	7	70	11	56	39	38	0	21	1.54
44813420--44813487	14	4.9	14	82	10	77	35	44	0	20	1.52
44813418--44813492	21	3.5	21	74	15	73	38	40	0	21	1.53
44816227--44816262	16	2.2	16	90	9	56	36	25	5	33	1.79
44820088--44820125	15	2.4	17	78	17	53	36	26	23	13	1.91
44820093--44820125	15	2.2	15	94	0	57	39	27	21	12	1.88
44821491--44821547	25	2.3	24	87	3	78	26	22	22	28	1.99
44821540--44821597	25	2.3	25	90	0	89	31	25	20	22	1.98
44837045--44837089	13	3.5	13	93	0	81	20	8	15	55	1.66
44838294--44838329	17	2.1	18	89	5	56	22	13	22	41	1.89
44845602--44845669	23	3.0	23	95	0	118	30	26	22	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44849183--44849256	37	2.0	37	100	0	148	40	8	18	32	1.80
44856226--44856259	13	2.6	13	100	0	68	29	0	0	70	0.87
44856446--44856499	20	2.7	19	80	8	72	24	3	5	66	1.29
44856757--44856800	18	2.4	18	92	0	70	52	11	2	34	1.50
44857111--44857173	33	1.9	33	84	12	85	46	0	1	52	1.10
44859709--44859841	61	2.2	60	85	4	180	51	3	6	39	1.42
44863242--44863295	26	2.0	26	85	3	72	59	16	7	16	1.59
44864893--44864934	21	2.0	21	85	0	57	14	21	2	61	1.43
44866291--44866340	26	1.9	26	95	0	91	12	24	34	30	1.91
44866212--44866476	103	2.6	103	89	3	408	20	20	29	29	1.97
44873703--44873968	103	2.6	104	90	3	419	19	20	29	29	1.97
44882479--44882579	11	9.4	11	73	15	77	56	0	2	40	1.14
44882525--44882589	30	2.2	30	89	8	105	56	0	1	41	1.08
44882562--44882609	17	2.8	18	81	9	55	58	0	0	41	0.98
44882479--44882597	44	2.8	42	85	8	127	57	0	2	39	1.12
44887251--44887288	13	2.9	13	88	7	51	60	0	2	36	1.11
44889500--44889547	22	2.1	23	85	11	64	66	6	0	27	1.15
44893118--44893276	79	2.0	79	100	0	318	17	3	23	54	1.59
44893480--44893580	52	1.9	52	93	0	175	32	20	18	27	1.96
44896677--44896835	79	2.0	79	100	0	318	17	3	23	54	1.59
44899720--44900031	87	3.7	86	83	5	339	47	11	10	30	1.73
44899721--44900031	174	1.8	169	81	6	392	47	11	10	30	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44900414--44900444	14	2.2	14	94	0	53	32	29	12	25	1.93
44901529--44901567	20	2.0	20	94	0	69	30	7	10	51	1.64
44901581--44901607	12	2.2	12	100	0	54	22	14	7	55	1.64
44903908--44903960	19	2.8	18	83	11	61	32	1	0	66	1.03
44905895--44906098	59	3.4	59	88	0	309	35	3	8	52	1.50
44906142--44906220	29	2.7	28	74	14	70	37	13	6	41	1.70
44906249--44906293	24	1.9	23	86	4	63	53	26	0	20	1.46
44906906--44906946	22	2.0	20	85	9	55	60	0	0	39	0.96
44922821--44923139	69	4.6	68	80	5	266	23	22	15	37	1.93
44922820--44923139	138	2.3	138	79	4	351	23	23	15	37	1.93
44925602--44925702	29	3.7	27	70	20	84	52	15	0	31	1.43
44925586--44925712	54	2.4	54	87	9	172	53	14	1	29	1.51
44925639--44925711	9	8.1	9	72	11	60	53	15	1	30	1.50
44925586--44925699	41	2.8	40	76	17	110	52	15	0	30	1.49
44925594--44925718	62	2.0	65	82	9	159	53	15	1	29	1.51
44925586--44925718	13	10.0	13	72	18	105	53	15	1	30	1.51
44925613--44925718	25	4.6	25	71	20	81	51	16	0	31	1.50
44927415--44927440	4	6.5	4	100	0	52	23	0	0	76	0.78
44934532--44934584	19	2.7	20	77	11	56	28	7	3	60	1.41
44934587--44934676	29	3.2	28	81	7	119	32	2	1	64	1.13
44934595--44934681	10	9.3	10	70	15	53	27	2	1	68	1.08
44934595--44934698	19	5.6	18	73	10	75	29	2	0	66	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44934587--44934692	56	1.9	56	88	3	160	32	2	0	64	1.15
44934594--44934682	9	9.9	8	71	17	52	29	2	1	67	1.10
44934595--44934698	27	3.8	26	76	16	93	29	2	0	66	1.13
44934601--44934698	28	3.5	27	75	16	92	30	3	1	65	1.15
44934772--44935000	90	2.5	90	85	6	331	33	9	21	35	1.85
44941775--44941828	20	2.5	21	80	11	65	81	3	12	1	0.91
44942170--44942364	107	1.8	107	88	2	302	25	17	10	45	1.81
44942807--44943584	87	8.9	87	89	1	1083	30	23	22	24	1.99
44943113--44943316	44	4.6	45	66	16	122	26	24	24	25	2.00
44942807--44943600	350	2.3	349	86	3	1080	30	23	22	24	1.99
44943826--44944022	44	4.5	44	66	10	134	29	19	23	26	1.98
44943762--44944254	132	3.7	132	90	1	740	30	18	23	26	1.98
44943762--44944249	263	1.9	263	89	2	757	30	19	23	27	1.98
44947371--44947414	13	3.5	13	78	12	56	36	2	6	54	1.40
44947364--44947415	24	2.2	24	92	0	86	34	1	7	55	1.39
44949687--44949729	20	2.1	21	95	4	79	46	0	20	32	1.51
44950493--44950533	21	2.0	21	85	4	57	26	4	21	46	1.72
44959721--44959764	21	2.2	20	95	4	79	45	0	0	54	0.99
44959701--44959772	16	4.2	16	74	19	65	48	0	0	51	1.00
44959814--44959861	19	2.7	18	76	20	55	52	4	2	41	1.32
44959851--44959921	38	1.9	36	83	11	90	53	4	2	39	1.35
44969872--44969909	14	2.6	15	84	15	53	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44969872--44969910	15	2.7	15	88	11	55	46	0	0	53	1.00
44973440--44973573	42	3.2	41	72	16	96	40	14	23	20	1.90
44986469--44986629	83	2.0	80	86	3	223	27	13	19	40	1.88
44995506--44995573	24	2.8	24	88	0	109	25	20	25	29	1.99
44998604--44998650	15	2.9	16	73	20	53	36	2	0	61	1.08
44998675--44998803	57	2.2	59	77	14	133	39	4	5	50	1.46
44999732--44999773	20	2.2	20	82	4	50	69	23	4	2	1.20
45001562--45001652	45	2.0	45	97	0	173	35	6	1	57	1.32
45003417--45003455	21	1.9	21	89	5	62	46	5	5	43	1.48
45003788--45003891	51	2.0	51	92	0	172	19	32	17	30	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199