genome.fa.s20.2.7.7.80.10.50.1000.32.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D07
Parameters: 2 7 7 80 10 50 1000
Length:  58101237

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  32  of  199  ( 23844 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10161158--10161302	43	3.4	43	83	5	177	18	20	24	36	1.95
10161113--10161280	86	2.0	86	80	7	189	22	20	24	32	1.98
10161225--10161450	43	5.2	43	78	3	148	25	28	19	26	1.99
10161158--10161322	86	1.9	86	81	4	199	21	21	23	32	1.98
10161757--10161868	21	5.3	21	81	0	107	3	41	16	37	1.66
10161757--10161858	42	2.4	42	83	0	123	2	43	16	37	1.63
10161840--10161986	66	2.2	66	87	4	208	13	27	18	40	1.88
10161845--10162009	66	2.5	66	87	3	199	13	26	19	40	1.89
10167415--10167448	16	2.1	16	94	0	59	32	0	14	52	1.42
10167429--10167484	25	2.2	25	83	0	67	35	5	14	44	1.68
10167486--10167665	9	20.7	9	64	18	51	38	2	14	44	1.58
10167486--10167526	13	3.2	13	82	6	57	34	0	17	48	1.47
10167510--10167588	34	2.3	34	80	0	86	41	1	13	43	1.53
10167588--10167740	34	4.7	34	80	9	183	37	3	10	48	1.54
10167594--10167807	31	6.9	31	77	12	208	37	3	10	48	1.55
10167683--10167833	56	2.7	56	98	0	293	39	2	11	47	1.54
10167925--10167981	24	2.4	24	96	0	105	50	3	3	42	1.36
10169451--10169484	17	2.0	17	94	0	59	38	11	38	11	1.79
10169725--10169792	33	2.1	33	94	0	118	35	29	2	32	1.73
10170014--10170052	16	2.6	15	84	11	53	35	5	35	23	1.77
10170028--10170084	23	2.4	22	80	13	60	36	1	42	19	1.62
10170047--10170100	23	2.3	23	84	6	65	38	1	38	20	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10171299--10171329	16	1.9	16	93	0	53	29	51	0	19	1.47
10171294--10171367	37	2.0	38	86	7	107	36	43	1	18	1.59
10172168--10172409	42	5.9	42	83	3	269	31	26	26	14	1.95
10172188--10172409	82	2.7	83	84	2	261	32	26	26	13	1.94
10172383--10172427	18	2.6	18	89	3	65	40	28	17	13	1.88
10172345--10172468	59	2.1	60	87	1	178	34	26	24	14	1.94
10172400--10172504	41	2.5	41	96	1	192	33	28	22	15	1.95
10172301--10172504	100	2.0	100	85	4	270	32	27	24	14	1.95
10172554--10172680	40	3.2	39	76	5	112	18	25	21	35	1.95
10173466--10173574	49	2.2	50	85	9	145	8	21	7	63	1.46
10174717--10174752	18	1.9	19	88	5	56	36	0	2	61	1.11
10174758--10174799	15	2.9	14	79	13	50	28	4	4	61	1.36
10175532--10175556	3	8.3	3	100	0	50	0	32	0	68	0.90
10179485--10179535	24	2.1	24	96	0	93	39	23	15	21	1.92
10183785--10183918	58	2.3	58	85	1	187	23	20	17	38	1.93
10189504--10189746	90	2.7	90	93	0	396	35	15	23	25	1.94
10203662--10203692	9	3.4	9	90	0	53	25	12	22	38	1.90
10204139--10204180	20	2.2	20	91	4	68	23	28	0	47	1.52
10204298--10204344	17	2.8	17	79	20	62	36	2	6	55	1.37
10208014--10208050	18	2.1	18	89	0	56	78	0	18	2	0.87
10209286--10209333	22	2.3	21	83	13	64	18	8	8	64	1.46
10211110--10211361	43	5.9	43	80	2	256	30	33	14	21	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10211110--10211361	86	2.9	85	82	4	285	30	33	14	21	1.93
10214054--10214084	10	3.1	10	95	0	53	51	12	19	16	1.76
10216537--10216583	24	1.9	24	83	12	60	40	8	4	46	1.54
10216602--10216757	75	2.1	76	91	4	253	30	9	14	45	1.77
10217563--10217639	14	5.5	14	82	0	100	29	42	0	27	1.56
10217563--10217644	42	1.9	43	90	2	130	32	40	0	26	1.57
10218076--10218439	41	8.9	41	84	2	356	30	23	20	25	1.99
10222063--10222121	31	1.9	31	82	6	75	57	0	3	38	1.15
10222247--10222339	47	2.0	47	100	0	186	32	23	12	31	1.92
10223890--10223928	2	19.5	2	94	0	69	51	2	0	46	1.14
10224875--10225251	101	3.6	99	82	11	331	30	16	14	38	1.89
10225242--10225266	10	2.5	10	100	0	50	0	8	0	92	0.40
10238832--10238871	19	2.2	18	86	4	53	50	10	5	35	1.58
10239574--10239672	33	3.0	33	80	0	99	15	28	9	47	1.75
10239600--10239697	33	3.0	33	76	5	92	17	27	7	47	1.73
10244211--10244252	11	3.6	11	81	12	57	59	4	0	35	1.19
10244646--10244695	3	16.7	3	100	0	100	34	0	0	66	0.92
10245553--10245613	23	2.6	22	82	12	61	67	0	6	26	1.15
10245593--10245630	19	2.0	19	89	0	58	65	2	2	28	1.19
10256574--10257364	109	7.5	106	87	6	1039	38	13	16	31	1.87
10256526--10257360	217	4.0	214	85	8	1054	37	14	16	30	1.89
10257481--10257800	103	3.1	101	79	15	364	28	15	15	41	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10257583--10257787	109	1.8	111	87	6	306	28	15	15	40	1.88
10262820--10262844	2	12.5	2	100	0	50	52	48	0	0	1.00
10267007--10267117	58	1.9	59	81	1	134	23	9	20	45	1.81
10267535--10267603	31	2.3	31	89	2	104	31	7	14	46	1.72
10274422--10274544	50	2.5	50	92	4	196	27	19	33	19	1.96
10278440--10278605	45	3.7	45	88	6	221	25	15	22	36	1.94
10278399--10278643	45	5.5	45	81	7	212	24	14	25	34	1.94
10278395--10278642	90	2.8	90	78	7	238	25	14	25	34	1.94
10281332--10281388	28	2.0	28	96	0	105	19	24	3	52	1.61
10286521--10286565	23	2.0	21	83	8	54	24	11	6	57	1.57
10287348--10287407	30	2.0	30	93	0	102	26	3	13	56	1.52
10289380--10289416	10	3.5	11	85	10	51	43	0	0	56	0.99
10292190--10292235	22	2.0	22	91	4	74	58	0	0	41	0.98
10292180--10292257	31	2.5	31	87	2	104	58	1	0	39	1.06
10295041--10295084	15	2.7	17	86	13	74	40	13	0	45	1.44
10295356--10295385	15	2.0	15	93	0	51	6	23	20	50	1.71
10298109--10298166	28	2.0	28	86	6	80	53	1	3	41	1.28
10304840--10305302	237	2.0	237	90	0	728	32	27	12	27	1.93
10305494--10305561	17	4.0	17	72	12	59	47	20	5	26	1.73
10307718--10307756	20	2.0	20	84	0	51	58	15	10	15	1.62
10308344--10308378	17	2.0	18	94	5	63	20	45	22	11	1.82
10309228--10309257	6	4.8	6	92	8	51	83	0	16	0	0.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10309228--10309257	13	2.4	13	94	5	53	83	0	16	0	0.65
10313197--10313242	21	2.1	23	88	8	69	13	26	21	39	1.90
10314711--10314745	18	2.0	17	94	5	61	40	2	28	28	1.71
10315895--10316048	51	3.0	51	100	0	308	45	17	7	29	1.76
10315999--10316104	33	3.2	34	83	10	105	42	16	8	33	1.78
10319161--10319242	26	3.0	27	75	12	87	43	1	2	52	1.22
10319296--10319337	18	2.6	16	82	17	52	45	0	0	54	0.99
10319296--10319330	18	2.0	18	88	5	54	45	0	0	54	0.99
10319243--10319467	120	1.9	119	94	0	396	44	1	6	48	1.36
10319416--10319450	18	2.0	17	88	5	52	45	0	0	54	0.99
10319416--10319470	15	3.4	16	80	16	53	47	0	1	50	1.11
10319404--10319718	156	2.0	156	96	1	578	48	5	3	42	1.42
10319572--10319606	18	2.0	17	88	5	52	45	0	0	54	0.99
10319770--10319860	45	2.0	45	82	2	112	37	27	6	28	1.82
10319841--10319892	16	3.2	16	97	0	95	38	34	0	26	1.57
10322584--10322656	35	2.1	35	97	0	137	38	19	15	27	1.91
10334142--10334174	17	1.9	17	100	0	66	24	27	6	42	1.78
10337707--10337756	17	2.9	17	90	0	82	26	26	6	42	1.78
10338697--10338721	3	8.3	3	100	0	50	32	0	0	68	0.90
10342480--10342603	49	2.5	49	81	2	151	33	10	12	43	1.76
10342986--10343080	37	2.6	36	83	6	118	43	18	16	21	1.88
10352040--10352080	21	1.9	22	90	5	66	39	12	9	39	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10364612--10364648	14	2.6	14	100	0	74	59	5	8	27	1.48
10367230--10367257	14	2.0	14	100	0	56	42	28	7	21	1.79
10378794--10378876	41	2.0	41	95	0	148	48	9	9	32	1.69
10381095--10381166	10	7.0	10	75	10	65	58	0	1	40	1.07
10381109--10381168	21	2.9	21	83	14	72	60	0	1	38	1.07
10396372--10396414	22	2.0	22	85	0	59	18	0	16	65	1.28
10396885--10396933	25	2.0	25	84	8	64	32	14	20	32	1.92
10404234--10404271	20	1.9	19	94	5	67	84	2	2	10	0.83
10410455--10410552	35	2.8	36	87	3	144	41	15	13	29	1.85
10410737--10411095	178	2.0	178	91	3	580	29	17	15	37	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199