genome.fa.s18.2.7.7.80.10.50.1000.102.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  102  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34690192--34690527	44	7.7	44	73	7	238	26	22	21	30	1.99
34690235--34690571	44	7.8	41	71	11	165	26	22	21	29	1.99
34690188--34690592	129	3.1	129	87	2	560	25	21	21	30	1.98
34690598--34691331	50	14.7	50	74	1	511	25	19	21	32	1.97
34690598--34691228	100	6.3	100	88	0	850	26	20	21	32	1.98
34690654--34691331	150	4.5	150	75	1	597	25	20	21	32	1.97
34690592--34691276	299	2.3	300	83	1	838	25	20	21	31	1.98
34691345--34691908	132	4.3	132	89	1	850	27	23	17	31	1.97
34691502--34691832	44	7.5	44	67	18	170	27	24	17	29	1.97
34692123--34693135	100	10.1	100	89	0	1378	25	19	22	32	1.97
34693278--34693742	44	10.6	43	64	20	167	28	24	17	29	1.97
34693121--34693755	132	4.8	132	88	1	913	27	23	18	30	1.98
34695006--34695051	4	12.0	4	86	9	69	0	26	0	73	0.83
34695006--34695070	12	6.1	11	87	10	75	1	21	0	76	0.86
34694985--34695062	24	3.2	24	78	20	83	2	21	1	74	1.01
34695036--34695074	10	4.1	10	93	3	55	2	12	0	84	0.72
34695028--34695085	27	2.1	28	84	9	75	8	12	0	79	0.94
34695032--34695086	26	2.0	27	76	16	51	9	10	0	80	0.92
34700294--34700322	3	9.7	3	100	0	58	68	31	0	0	0.89
34702463--34702492	12	2.5	12	94	0	51	73	3	16	6	1.18
34704932--34704965	17	2.0	17	94	0	59	32	11	20	35	1.89
34705110--34705320	108	2.0	108	89	0	323	18	19	33	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34706570--34706609	19	2.1	19	85	0	53	80	0	20	0	0.72
34707537--34707649	19	5.8	19	87	4	172	38	10	15	35	1.81
34707538--34707649	40	2.8	40	93	2	192	39	10	14	35	1.81
34707537--34707649	59	1.9	57	91	3	181	38	10	15	35	1.81
34709128--34709322	98	2.0	98	94	0	345	28	10	25	36	1.88
34720071--34720109	20	2.0	20	90	5	62	48	5	10	35	1.59
34729008--34729052	18	2.4	19	85	7	65	8	15	0	75	1.03
34729008--34729065	19	3.1	19	82	9	66	8	18	0	72	1.10
34729088--34729124	14	2.9	12	88	11	56	0	24	0	75	0.80
34729091--34729119	7	4.1	7	100	0	58	0	27	0	72	0.85
34729660--34729716	29	1.9	30	92	3	98	19	0	19	61	1.35
34731031--34731076	16	2.6	18	76	16	51	50	0	10	39	1.38
34732503--34732534	12	2.6	13	85	14	50	46	3	0	50	1.17
34732466--34732532	30	2.2	29	82	10	73	35	2	0	61	1.12
34732502--34732539	11	3.5	11	86	10	51	42	2	0	55	1.14
34733989--34734042	7	7.4	7	79	8	54	16	0	44	38	1.48
34734201--34734250	20	2.5	21	87	6	68	16	0	36	48	1.46
34734380--34734412	7	4.9	7	88	3	50	15	6	33	45	1.70
34734380--34734412	14	2.4	14	95	5	59	15	6	33	45	1.70
34734382--34734453	35	2.1	35	83	0	90	19	2	29	48	1.63
34734904--34735138	115	2.0	115	90	3	366	29	17	19	33	1.95
34735655--34735996	172	2.0	169	90	7	541	22	38	10	28	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34736733--34736774	22	2.0	21	81	13	50	45	11	16	26	1.82
34736840--34736973	66	2.0	66	100	0	268	33	13	20	32	1.92
34737700--34738063	9	40.6	9	68	16	177	44	17	1	36	1.59
34737770--34738063	16	16.4	18	70	17	125	43	17	0	38	1.54
34737943--34737995	19	2.8	19	85	2	72	47	18	1	32	1.60
34737700--34738063	25	14.2	25	68	19	130	44	17	1	36	1.59
34743554--34743622	21	3.3	21	85	0	93	39	18	39	2	1.66
34743607--34743646	12	3.3	12	89	0	53	40	17	37	5	1.72
34744080--34744203	42	2.9	43	81	8	146	26	24	18	30	1.98
34747134--34747314	53	3.7	53	72	21	194	48	7	4	39	1.51
34747148--34747331	93	2.0	93	94	0	323	47	6	5	39	1.54
34748074--34748210	42	3.2	42	83	7	152	28	19	27	24	1.99
34748657--34748724	21	3.2	21	89	0	100	1	42	20	35	1.61
34754281--34754451	22	8.1	22	74	17	76	35	1	15	47	1.56
34754303--34754419	9	12.6	9	72	20	89	35	0	17	47	1.54
34754303--34754419	22	6.3	18	77	15	89	35	0	17	47	1.54
34754363--34754447	38	2.2	38	97	2	161	36	0	15	48	1.45
34754444--34754638	69	2.9	68	89	3	259	47	4	5	43	1.44
34755326--34755356	16	1.9	16	100	0	62	51	6	3	38	1.44
34755821--34755878	26	2.2	26	93	0	98	39	3	17	39	1.66
34756962--34757005	24	1.9	22	90	9	70	20	0	43	36	1.52
34757761--34757801	19	2.1	20	82	13	50	46	0	4	48	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34758524--34758615	7	12.3	7	73	13	76	31	47	0	20	1.50
34758524--34758612	15	5.9	15	75	16	76	32	46	0	21	1.52
34758523--34758615	30	3.4	27	77	16	102	32	47	0	20	1.51
34758524--34758626	14	6.9	15	72	13	61	33	44	0	22	1.53
34759461--34759590	39	3.3	39	73	6	145	23	19	23	33	1.97
34759441--34759609	39	4.3	38	70	9	124	21	17	24	36	1.95
34759441--34759609	79	2.1	79	98	0	329	21	17	24	36	1.95
34763485--34763555	23	3.2	23	67	25	71	57	0	12	29	1.35
34763485--34763574	43	2.1	44	93	6	157	56	0	12	31	1.36
34763485--34763550	20	3.2	20	70	22	55	57	0	13	28	1.37
34768739--34768821	41	2.0	40	88	6	123	43	12	8	36	1.72
34777294--34777536	50	4.7	50	86	3	297	27	21	29	21	1.99
34787082--34787120	4	9.8	4	82	0	51	20	5	0	74	1.01
34787849--34787894	21	2.2	21	88	0	65	43	6	17	32	1.75
34799482--34799590	40	2.7	40	80	2	121	20	22	19	37	1.94
34805075--34805124	10	4.8	10	79	16	57	4	0	10	86	0.71
34805072--34805124	11	4.6	12	81	13	58	3	0	11	84	0.73
34805072--34805124	9	6.0	9	78	8	56	3	0	11	84	0.73
34805346--34805383	13	3.0	13	88	3	60	65	0	0	34	0.93
34805992--34806092	35	2.9	35	84	8	134	37	15	22	23	1.93
34808226--34808268	16	2.7	16	100	0	86	46	13	23	16	1.83
34809535--34809597	20	3.2	20	81	6	74	52	4	0	42	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34809519--34809618	40	2.5	40	73	15	98	58	4	1	37	1.24
34809813--34809870	21	2.8	21	89	0	89	25	31	10	32	1.89
34810753--34810797	20	2.2	20	92	0	72	13	20	8	57	1.62
34816252--34816282	13	2.4	13	94	0	53	25	22	32	19	1.97
34819848--34819896	21	2.3	21	79	6	55	24	28	18	28	1.98
34821578--34821616	10	4.1	9	87	9	51	61	5	0	33	1.18
34821580--34821616	19	1.9	20	88	5	58	59	5	0	35	1.20
34822120--34822168	22	2.2	23	79	17	59	30	2	4	63	1.24
34822128--34822181	10	5.2	10	76	8	54	38	0	3	57	1.17
34822137--34822186	22	2.3	22	79	6	57	40	0	4	56	1.18
34822167--34822230	35	1.9	32	84	12	85	50	1	3	45	1.27
34822208--34822271	19	3.2	20	77	16	71	59	4	0	35	1.18
34822206--34822272	20	3.4	21	75	21	72	58	4	0	37	1.19
34823441--34823465	13	1.9	13	100	0	50	56	0	0	44	0.99
34827748--34827814	9	7.4	9	86	0	89	40	25	10	23	1.86
34827748--34827814	27	2.5	27	90	0	107	40	25	10	23	1.86
34827917--34827960	18	2.4	18	88	0	61	13	2	43	40	1.57
34835682--34835727	22	2.2	20	88	7	65	17	2	0	80	0.81
34836715--34836770	20	2.8	20	73	13	60	35	14	3	46	1.62
34838898--34838944	19	2.5	19	86	6	60	25	19	10	44	1.82
34841816--34841870	12	4.4	12	84	6	74	85	0	14	0	0.60
34841816--34841870	13	4.1	13	82	15	67	85	0	14	0	0.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34841816--34841871	25	2.4	22	85	11	76	83	0	16	0	0.64
34843242--34843440	51	4.0	50	75	8	188	31	26	21	20	1.98
34843242--34843440	100	2.0	100	89	3	303	31	26	21	20	1.98
34843283--34843612	172	1.9	172	86	3	468	29	25	21	23	1.99
34843457--34843826	100	3.7	100	83	5	408	31	22	21	24	1.98
34843465--34843734	50	5.4	50	75	5	233	31	23	21	23	1.98
34843838--34844218	44	8.8	44	67	9	149	30	20	22	26	1.98
34843835--34844243	217	1.9	217	90	2	660	30	21	21	27	1.98
34847659--34847690	3	10.7	3	100	0	64	34	0	0	65	0.93
34849087--34849223	35	3.9	35	80	1	150	43	18	17	20	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199