genome.fa.s18.2.7.7.80.10.50.1000.72.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  72  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26737549--26737660	41	2.7	41	87	0	170	22	20	29	27	1.98
26737667--26737704	20	1.9	20	88	0	58	23	5	5	65	1.34
26738300--26738356	21	2.7	21	83	2	60	29	0	38	31	1.58
26739103--26739167	31	2.1	31	97	0	121	35	0	1	63	1.04
26739840--26739874	3	11.7	3	100	0	70	31	0	0	68	0.90
26742253--26742278	5	5.2	5	100	0	52	80	0	0	19	0.71
26743886--26744218	43	7.7	43	86	1	434	23	18	33	24	1.96
26746060--26746667	44	14.1	43	71	11	388	26	21	21	31	1.98
26746054--26746344	129	2.3	127	92	1	465	26	22	21	28	1.99
26746054--26746388	129	2.6	127	85	5	442	25	22	22	29	1.99
26746192--26746517	171	1.9	173	92	1	548	25	20	22	32	1.98
26746148--26746612	171	2.7	170	81	4	483	25	20	22	31	1.98
26746363--26746665	129	2.3	129	91	0	489	27	20	20	32	1.97
26746704--26747859	50	23.2	49	68	13	443	24	20	22	32	1.98
26746703--26747839	100	11.4	100	86	3	1059	24	20	22	32	1.98
26747801--26748609	125	6.5	125	93	0	1339	26	18	19	35	1.95
26747960--26748009	25	2.0	25	88	0	73	26	12	20	42	1.86
26749777--26749876	43	2.3	42	80	13	114	30	25	13	32	1.93
26751085--26751130	12	3.6	13	80	13	51	4	17	0	78	0.91
26754651--26754960	110	2.9	109	91	3	484	32	20	17	30	1.95
26755435--26755464	13	2.3	13	94	0	51	60	3	3	33	1.30
26755603--26755668	3	22.0	3	93	0	114	65	1	1	31	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26758304--26758335	16	2.0	16	100	0	64	37	0	6	56	1.25
26758284--26758330	21	2.3	20	80	16	53	38	2	4	55	1.31
26766783--26767184	205	2.0	205	98	0	786	43	19	21	16	1.88
26773612--26773650	18	2.2	18	85	0	51	25	7	25	41	1.82
26773651--26773675	9	2.8	9	100	0	50	68	0	0	32	0.90
26782904--26782938	16	2.2	16	89	0	52	28	0	0	71	0.86
26786136--26786244	25	4.4	25	75	9	91	33	21	25	19	1.96
26786149--26786350	24	8.3	24	72	8	104	33	21	27	17	1.96
26786191--26786393	97	2.1	99	80	3	232	35	21	24	17	1.95
26786308--26786388	25	3.3	26	79	8	80	34	19	27	18	1.95
26787026--26787065	21	1.9	21	84	0	53	40	5	2	52	1.37
26792054--26792095	19	2.3	18	83	4	57	61	7	2	28	1.35
26793197--26793288	46	2.0	46	100	0	184	45	13	4	36	1.63
26793197--26793269	26	3.0	26	62	22	68	45	15	5	34	1.69
26795674--26795714	19	2.2	19	86	4	57	29	2	0	68	1.03
26796722--26796768	20	2.3	20	89	7	69	63	6	0	29	1.19
26801045--26801097	16	3.3	16	89	0	79	37	5	33	22	1.78
26801077--26801167	44	2.0	46	89	4	141	26	4	30	38	1.76
26801077--26801183	46	2.5	44	82	11	125	28	3	30	36	1.75
26801326--26801481	17	10.5	15	65	30	61	54	2	1	41	1.22
26801331--26801364	17	2.0	17	100	0	68	58	0	0	41	0.98
26801448--26801481	17	2.0	17	100	0	68	58	0	0	41	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26801311--26801715	117	3.5	117	95	0	729	52	3	1	41	1.30
26801560--26801598	17	2.5	15	84	15	60	61	0	0	38	0.96
26801565--26801598	17	2.0	17	100	0	68	58	0	0	41	0.98
26801631--26801670	20	2.0	21	85	5	55	60	5	0	35	1.19
26801682--26801715	17	2.0	17	94	0	59	55	2	0	41	1.15
26801691--26801780	23	3.9	22	72	18	67	53	5	0	41	1.24
26801731--26801794	32	2.0	32	81	0	74	48	3	0	48	1.17
26804146--26804262	29	4.1	29	72	14	127	29	8	8	52	1.61
26804522--26804552	2	15.5	2	100	0	62	51	48	0	0	1.00
26807933--26808184	126	2.0	126	98	0	486	33	25	10	29	1.90
26810177--26810301	47	2.6	48	78	2	137	21	16	31	31	1.95
26810852--26810953	22	4.3	25	76	6	90	19	24	17	38	1.93
26810852--26810963	47	2.4	48	78	15	117	20	23	17	38	1.93
26811894--26811950	28	2.0	28	86	6	80	31	0	3	64	1.10
26815474--26815519	23	2.0	24	83	12	60	32	0	2	65	1.05
26826728--26826792	20	3.1	21	76	8	71	38	0	0	61	0.96
26829566--26829710	47	3.1	47	73	16	158	43	2	4	50	1.33
26829551--26829766	91	2.4	91	91	0	342	46	2	3	47	1.35
26829634--26829833	101	2.0	97	79	14	210	47	3	3	46	1.33
26829624--26829776	47	3.3	45	69	15	125	46	2	3	47	1.35
26829773--26830183	120	3.4	120	97	1	770	44	2	4	48	1.38
26829847--26830151	57	5.1	59	65	23	197	43	2	6	47	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26830134--26830169	18	2.0	18	88	0	54	50	0	0	50	1.00
26830402--26830448	16	2.9	16	93	0	76	23	36	4	36	1.75
26830408--26830454	16	2.9	16	93	0	76	23	36	4	36	1.75
26830625--26830673	21	2.3	21	79	6	55	46	6	6	40	1.53
26830707--26830746	20	2.0	21	85	5	55	37	20	12	30	1.89
26832696--26832731	3	12.0	3	93	0	63	63	0	2	33	1.08
26834274--26834319	17	2.6	17	78	21	58	69	0	30	0	0.89
26835119--26835151	18	1.9	18	88	11	52	27	0	18	54	1.44
26835803--26835842	21	1.9	21	84	0	53	65	5	0	30	1.14
26836140--26836200	21	2.9	22	77	18	67	62	4	0	32	1.17
26836156--26836196	22	1.9	21	85	5	55	63	7	0	29	1.21
26836154--26836248	19	5.1	18	71	12	57	63	4	1	31	1.21
26840079--26840114	16	2.3	16	90	4	56	30	0	5	63	1.17
26844349--26844402	3	18.0	3	100	0	108	66	0	0	33	0.92
26848536--26848570	9	3.7	10	88	11	56	40	0	0	60	0.97
26849117--26849152	18	1.9	18	88	5	54	50	5	2	41	1.40
26849126--26849173	24	2.0	23	84	4	60	45	2	2	50	1.25
26851793--26852720	43	21.9	44	69	11	373	25	23	22	28	1.99
26852004--26852706	127	5.5	127	92	1	1126	26	23	22	28	1.99
26852045--26852663	44	14.7	41	67	13	256	26	23	21	27	1.99
26852175--26852536	83	4.3	84	70	9	279	27	23	22	27	1.99
26853954--26853985	13	2.3	15	89	10	50	12	15	0	71	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26853954--26853992	7	5.7	7	90	9	55	12	15	0	71	1.14
26860439--26860469	12	2.7	11	95	5	53	64	0	0	35	0.94
26862055--26862081	12	2.2	12	100	0	54	25	14	7	51	1.68
26870972--26871062	45	2.0	45	100	0	182	48	10	17	23	1.79
26874808--26874877	26	2.7	26	84	8	81	70	4	2	22	1.19
26883776--26883818	22	2.0	22	86	9	61	51	11	11	25	1.72
26887789--26887818	14	2.1	14	93	0	51	26	10	13	50	1.73
26889652--26889708	29	1.9	30	85	3	80	35	8	17	38	1.81
26889883--26889939	29	1.9	30	85	3	80	45	10	10	33	1.73
26890519--26890577	24	2.4	24	82	5	64	30	5	3	61	1.34
26890604--26890646	19	2.2	20	80	19	56	48	0	0	51	1.00
26898100--26898350	126	2.0	126	92	0	421	41	11	16	29	1.85
26914561--26914667	44	2.4	45	81	3	110	30	20	24	24	1.98
26914608--26915102	143	3.5	143	84	3	631	28	22	20	29	1.98
26915425--26915480	24	2.3	24	93	0	94	25	26	14	33	1.94
26936656--26936722	31	2.2	31	83	0	80	47	7	10	34	1.66
26937853--26937898	20	2.3	19	82	14	56	43	2	0	54	1.12
26943173--26943235	30	2.1	31	96	3	119	25	14	3	57	1.52
26947794--26947826	17	1.9	17	100	0	66	33	0	0	66	0.92
26949171--26949232	32	1.9	32	96	0	115	38	22	9	29	1.86
26951825--26951864	21	2.0	20	85	5	53	50	2	10	37	1.50
26952297--26952332	2	18.0	2	100	0	72	50	0	50	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26971420--26971475	20	2.8	20	86	8	78	30	1	1	66	1.12
26971986--26972029	11	3.9	11	82	5	52	36	4	0	59	1.18
26972015--26972057	19	2.3	19	84	8	52	25	9	2	62	1.37
26974956--26974995	19	2.1	19	85	0	53	27	20	0	52	1.46
26975164--26975205	6	6.8	6	86	2	57	42	16	21	19	1.89
26975197--26975271	33	2.3	33	92	0	123	38	18	18	24	1.93
26975162--26975513	135	2.6	133	81	13	462	38	18	19	23	1.93
26975320--26975559	45	5.2	45	69	22	158	39	20	19	21	1.93
26975409--26975525	57	2.1	57	82	6	139	38	17	21	22	1.93
26975230--26975591	140	2.5	144	90	4	563	37	18	20	23	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199