genome.fa.s18.2.7.7.80.10.50.1000.94.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  94  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32173099--32173610	111	4.5	111	85	7	683	32	17	15	35	1.91
32176805--32176900	31	3.1	31	93	3	165	46	12	9	31	1.73
32182422--32182451	13	2.3	13	100	0	60	0	13	13	73	1.10
32182421--32182501	30	2.7	30	90	5	119	1	13	13	71	1.21
32183036--32183131	31	3.1	31	93	3	165	46	12	9	31	1.73
32184680--32184955	95	2.9	94	77	6	261	41	15	2	39	1.63
32192507--32192600	23	4.1	23	85	0	134	22	25	4	47	1.69
32197001--32197094	23	4.1	23	85	0	134	22	25	4	47	1.69
32197990--32198020	8	3.9	8	100	0	62	35	0	25	38	1.56
32206248--32206292	16	2.8	16	93	0	72	40	11	8	40	1.72
32216926--32217023	43	2.3	43	89	3	144	31	32	15	20	1.93
32217796--32217824	13	2.1	14	93	6	51	55	10	0	34	1.34
32219797--32219842	23	2.0	24	86	4	67	63	8	10	17	1.51
32219783--32219842	23	2.5	23	81	8	66	63	6	10	20	1.47
32219966--32219994	6	4.8	6	100	0	58	51	0	13	34	1.42
32223455--32223523	27	2.6	27	95	2	122	36	42	7	14	1.73
32224941--32225013	23	3.1	23	76	11	60	31	8	5	54	1.53
32225227--32225261	18	1.9	18	94	0	61	37	5	2	54	1.39
32232624--32232920	44	6.9	44	72	12	215	31	21	21	25	1.98
32232624--32232915	46	6.8	43	71	12	206	31	21	20	26	1.98
32232836--32232952	44	2.7	43	81	6	110	28	23	23	24	2.00
32232881--32233335	87	5.2	86	68	11	269	32	19	21	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32233637--32233705	27	2.6	27	95	2	122	36	42	7	14	1.73
32235111--32235183	22	3.1	23	78	7	67	30	8	5	56	1.51
32235397--32235431	18	1.9	18	94	0	61	37	5	2	54	1.39
32237735--32237861	43	3.1	42	84	15	194	33	0	17	48	1.47
32237735--32237863	36	3.4	36	89	9	172	34	0	17	48	1.47
32237915--32237941	13	2.1	13	100	0	54	37	11	0	51	1.37
32240475--32240578	41	2.6	40	85	1	127	19	19	20	41	1.91
32242261--32242294	18	2.0	16	88	11	50	52	0	2	44	1.16
32243411--32243461	21	2.2	24	83	10	63	37	7	25	29	1.84
32245938--32245981	14	3.1	14	83	3	52	45	0	2	52	1.13
32246346--32246452	52	2.1	52	96	0	196	31	14	14	40	1.85
32254839--32254868	15	1.9	16	93	6	53	60	0	0	40	0.97
32258964--32258993	3	10.0	3	92	0	51	30	33	0	36	1.58
32262802--32262835	14	2.4	14	90	0	50	17	0	8	73	1.08
32272681--32272732	24	2.2	24	89	0	77	55	9	1	32	1.43
32275176--32275215	19	2.1	19	90	0	62	37	20	10	32	1.85
32275607--32275631	13	1.9	13	100	0	50	36	8	0	56	1.29
32275991--32276189	101	2.0	98	91	2	317	28	19	17	35	1.94
32281168--32281193	5	5.2	5	100	0	52	42	19	19	19	1.90
32282302--32282332	9	3.4	9	90	0	53	38	22	12	25	1.90
32286277--32286302	5	5.2	5	100	0	52	42	19	19	19	1.90
32287409--32287439	9	3.4	9	90	0	53	38	22	12	25	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32292117--32292205	30	3.1	29	71	19	78	41	0	5	52	1.25
32294380--32294421	16	2.6	16	92	0	66	42	7	2	47	1.43
32295334--32295402	36	1.9	37	85	5	97	46	1	2	49	1.25
32297489--32297777	143	2.0	143	92	1	481	36	10	17	34	1.85
32298797--32298882	39	2.2	39	87	6	129	27	17	26	27	1.98
32313240--32313293	26	2.1	26	100	0	108	37	7	11	44	1.68
32325415--32325460	17	2.6	17	86	3	56	32	0	6	60	1.22
32325910--32325998	30	3.2	30	73	18	100	25	2	11	60	1.42
32325926--32326013	30	3.2	29	75	15	96	25	4	11	59	1.51
32327019--32327063	18	2.5	17	85	7	54	66	0	0	33	0.92
32331298--32331342	19	2.4	19	96	3	83	28	15	8	46	1.76
32331898--32331956	27	2.2	27	87	3	84	27	15	5	52	1.63
32332021--32332059	21	1.9	20	84	5	51	20	10	20	48	1.78
32332319--32332383	18	3.8	17	73	18	62	1	18	3	76	0.99
32332321--32332373	18	2.9	18	81	13	65	1	18	0	79	0.83
32338834--32338928	45	2.3	42	78	18	108	38	6	6	48	1.54
32344230--32344271	22	2.0	21	85	4	57	61	11	11	14	1.56
32344226--32344363	62	2.3	59	81	9	154	50	10	11	27	1.70
32345981--32346013	10	3.0	11	86	13	50	45	9	3	42	1.51
32346081--32346135	19	2.8	20	76	13	60	41	1	0	56	1.10
32346081--32346135	20	2.8	19	81	8	56	41	1	0	56	1.10
32356439--32356490	14	3.6	14	82	10	52	69	1	9	19	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32357200--32357226	3	9.0	3	100	0	54	33	0	0	66	0.92
32359177--32359226	24	2.1	24	100	0	100	32	16	18	34	1.92
32359485--32359536	24	2.2	24	100	0	104	30	15	17	36	1.91
32359020--32359641	310	2.0	311	98	0	1201	34	12	20	31	1.90
32365993--32366029	17	2.2	17	90	0	56	43	2	2	51	1.30
32366003--32366047	17	2.5	18	85	7	56	33	2	2	62	1.20
32366303--32366357	23	2.2	23	84	12	65	36	1	1	60	1.18
32366958--32366987	11	2.6	11	94	5	51	60	0	3	36	1.14
32367175--32367256	41	2.0	41	90	0	128	28	25	19	26	1.99
32367403--32367432	15	2.0	15	100	0	60	33	20	0	46	1.51
32368344--32368547	102	2.0	102	100	0	408	32	13	26	27	1.94
32371595--32371676	41	2.0	41	100	0	164	39	7	17	36	1.77
32372037--32372069	16	2.1	16	100	0	66	30	18	30	21	1.97
32372092--32372433	171	2.0	171	100	0	684	28	17	18	35	1.94
32372142--32372482	84	4.0	84	77	11	424	27	17	19	34	1.95
32372647--32372904	42	6.7	38	76	13	235	27	12	24	35	1.91
32372723--32372787	32	2.0	32	100	0	130	27	6	21	44	1.76
32372643--32372866	111	2.0	111	100	0	448	27	11	23	37	1.89
32372755--32372916	79	2.1	79	100	0	324	27	13	23	35	1.92
32373236--32373304	32	2.2	32	94	0	120	30	18	13	37	1.89
32373584--32373720	68	2.0	68	100	0	274	21	20	19	37	1.94
32374479--32374550	29	2.4	29	90	2	117	31	12	5	50	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32375018--32375085	35	1.9	35	100	0	136	72	5	13	8	1.28
32380766--32380819	18	2.9	18	80	2	63	11	3	46	38	1.57
32381072--32381102	12	2.6	12	94	0	53	6	25	38	29	1.81
32384204--32384233	13	2.3	13	94	0	51	46	13	16	23	1.82
32391814--32391856	20	2.2	20	100	0	86	32	9	13	44	1.76
32405974--32406018	22	2.0	22	86	0	63	33	0	8	57	1.30
32413886--32413920	18	1.9	18	88	0	52	34	5	2	57	1.37
32413904--32413988	27	3.2	26	73	17	61	35	5	1	57	1.30
32413958--32414018	19	3.2	19	77	13	61	34	3	1	60	1.23
32413958--32414020	20	3.3	19	77	14	67	36	3	1	58	1.23
32414074--32414136	31	2.1	31	82	8	76	25	4	3	66	1.26
32419302--32419363	26	2.4	26	86	2	81	40	14	14	30	1.86
32425322--32425523	34	5.7	34	68	13	113	32	22	22	21	1.98
32425321--32425546	69	3.2	69	74	7	204	31	23	23	22	1.98
32427432--32427491	19	3.1	20	70	15	54	45	1	0	53	1.10
32427423--32427486	20	3.3	19	76	6	65	43	1	0	54	1.09
32427423--32427509	38	2.2	39	81	4	95	47	1	2	49	1.21
32433724--32433751	9	3.1	9	100	0	56	57	10	0	32	1.33
32433694--32433903	68	3.1	68	97	1	388	45	9	4	40	1.57
32433792--32433819	9	3.1	9	100	0	56	57	10	0	32	1.33
32433892--32433933	16	2.6	16	96	0	75	45	7	0	47	1.30
32433694--32433927	68	3.6	66	92	6	338	46	8	4	40	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32436005--32436123	63	1.9	63	94	0	211	29	14	25	31	1.95
32437362--32437405	20	2.2	20	95	0	79	36	15	27	20	1.93
32437362--32437417	20	2.8	20	89	2	69	33	14	26	25	1.94
32445466--32445535	22	3.4	19	75	16	61	2	17	7	72	1.19
32453204--32453690	124	3.9	124	89	1	710	24	21	22	31	1.98
32458046--32458130	29	2.9	30	77	5	93	37	24	16	21	1.93
32464241--32464325	28	3.0	28	98	0	161	28	29	7	35	1.83
32467577--32467621	18	2.5	18	82	7	56	37	4	20	37	1.73
32469986--32470021	2	18.0	2	100	0	72	50	0	0	50	1.00
32485698--32485817	27	4.5	27	87	1	143	45	19	16	19	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199