genome.fa.s18.2.7.7.80.10.50.1000.155.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  155  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51248032--51248251	19	11.5	19	69	22	124	55	12	1	31	1.45
51248035--51248149	22	5.0	22	83	12	160	56	12	0	30	1.42
51248011--51248149	49	3.0	47	84	8	178	54	13	0	30	1.44
51248035--51248175	70	2.0	71	82	6	171	56	13	1	29	1.46
51248183--51248251	20	3.5	19	90	5	102	56	10	1	31	1.41
51248035--51248149	21	5.1	21	72	21	99	56	12	0	30	1.42
51248087--51248249	43	4.0	40	70	22	133	55	12	1	30	1.45
51248087--51248251	39	4.1	39	70	24	128	55	12	1	30	1.45
51248087--51248250	61	2.7	62	69	18	162	55	12	1	30	1.45
51248410--51248469	3	21.3	3	80	13	74	0	38	0	61	0.96
51248406--51248483	14	5.7	14	79	13	83	0	37	0	62	0.95
51248411--51248469	25	2.4	25	100	0	118	0	38	0	61	0.96
51248406--51248483	11	6.9	11	79	17	81	0	37	0	62	0.95
51250233--51250307	18	4.1	18	73	14	55	62	5	5	26	1.38
51250524--51250657	9	14.3	9	66	13	56	33	2	1	62	1.16
51250516--51250617	10	10.5	10	67	16	54	29	3	0	65	1.17
51250570--51250628	17	3.4	17	77	13	66	28	3	0	67	1.06
51250558--51250617	19	3.0	19	83	11	59	25	5	0	70	1.08
51250605--51250648	19	2.3	20	80	7	56	43	0	0	56	0.99
51250527--51250696	29	6.1	28	71	12	82	32	2	1	63	1.17
51258410--51258446	12	3.1	12	92	0	65	18	27	13	40	1.88
51274048--51274085	14	2.8	14	84	4	51	42	13	0	44	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51277589--51277642	22	2.5	21	80	14	56	50	0	7	42	1.30
51278303--51278345	9	4.9	9	88	2	52	58	0	4	37	1.19
51278303--51278345	18	2.4	18	88	3	61	58	0	4	37	1.19
51282002--51282040	19	2.1	19	85	9	53	38	2	15	43	1.60
51284217--51284301	42	2.0	42	88	6	127	41	21	18	18	1.91
51285635--51285677	22	2.0	22	81	9	52	62	0	34	2	1.08
51286386--51286438	18	2.9	17	75	10	52	56	32	1	9	1.42
51287719--51287768	20	2.5	19	78	9	55	38	14	0	48	1.44
51288107--51288719	109	5.6	109	93	1	1021	30	15	19	33	1.93
51288107--51288719	219	2.8	218	94	1	1057	30	15	19	33	1.93
51294266--51295095	88	9.4	88	92	0	1203	26	25	24	23	2.00
51294850--51294988	44	3.2	43	66	11	102	25	28	25	20	1.99
51294266--51295095	351	2.4	352	89	0	1230	26	25	24	23	2.00
51294267--51295095	439	1.9	439	88	0	1262	26	25	24	23	2.00
51295076--51295364	132	2.2	132	90	1	463	30	19	24	25	1.98
51295381--51295565	99	1.9	99	88	0	280	36	24	19	19	1.95
51295404--51295569	50	3.3	49	72	5	154	36	24	19	19	1.95
51295581--51295732	50	3.0	50	71	5	137	29	23	22	24	1.99
51295422--51295783	100	3.6	100	78	5	304	33	24	19	22	1.97
51296117--51296159	23	2.0	22	86	13	63	13	48	23	13	1.79
51297054--51297084	3	10.3	3	100	0	62	35	0	0	64	0.94
51297193--51297242	20	2.5	21	77	9	59	40	12	0	48	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51297433--51297482	18	2.8	18	82	14	52	16	2	8	74	1.15
51297604--51298545	110	8.6	109	93	1	1537	31	15	19	34	1.92
51297604--51298545	219	4.3	219	93	1	1550	31	15	19	34	1.92
51297595--51298545	329	2.9	328	94	1	1631	31	15	19	34	1.92
51301546--51301578	15	2.2	15	94	0	57	27	12	30	30	1.92
51303385--51303452	23	3.0	23	93	0	118	30	27	22	19	1.97
51309346--51309386	20	2.0	20	90	0	64	51	12	9	26	1.70
51312021--51312073	23	2.3	23	80	6	63	45	5	5	43	1.51
51313818--51313850	15	2.2	15	94	0	57	27	12	30	30	1.92
51319221--51319308	35	2.5	34	81	7	104	34	18	23	23	1.96
51323999--51324498	82	6.1	82	91	0	768	23	20	24	31	1.98
51324538--51325182	134	4.8	133	86	4	924	28	23	19	28	1.98
51324838--51324932	44	2.2	44	84	3	120	27	21	21	30	1.98
51324538--51325182	264	2.4	269	86	3	919	28	23	19	28	1.98
51325003--51325182	46	4.0	46	66	11	120	30	24	19	26	1.98
51325113--51325565	44	10.3	45	74	4	368	29	26	15	28	1.96
51325115--51325532	88	4.7	88	83	2	437	29	26	15	28	1.96
51325113--51325488	175	2.1	178	83	4	476	29	26	15	28	1.96
51325326--51325566	132	1.8	132	92	0	410	30	24	15	29	1.96
51327094--51327123	15	2.0	15	93	0	51	3	13	6	76	1.11
51328401--51328582	62	3.0	62	89	4	275	32	5	20	41	1.75
51335793--51335825	15	2.2	15	94	0	57	27	12	30	30	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51339235--51339330	31	3.1	31	93	3	165	44	13	10	31	1.77
51342472--51342563	22	4.3	21	74	15	64	1	15	10	72	1.17
51342470--51342589	10	11.5	10	71	16	84	1	15	10	72	1.19
51342530--51342589	29	2.1	29	84	3	77	1	10	11	76	1.09
51342539--51342594	19	2.8	19	83	5	67	5	7	8	78	1.08
51343142--51343237	31	3.1	31	92	3	156	44	12	10	32	1.76
51345412--51345453	19	2.2	19	91	0	66	14	2	2	80	0.90
51345801--51345839	7	5.4	7	87	6	51	41	43	0	15	1.46
51346420--51346573	41	3.8	41	79	3	177	31	27	19	22	1.98
51346420--51346573	81	1.9	82	82	6	197	31	27	19	22	1.98
51356787--51356833	25	1.9	24	82	4	58	31	10	6	51	1.62
51369859--51369999	50	2.8	50	86	2	185	26	23	24	26	2.00
51370069--51370235	50	3.4	49	72	6	158	30	18	25	25	1.98
51370077--51370383	99	3.1	100	80	5	345	31	19	22	26	1.98
51370394--51370696	44	7.1	42	70	14	203	31	19	20	28	1.97
51370394--51370626	41	5.5	42	72	6	195	29	20	21	28	1.98
51370363--51370697	127	2.6	127	88	2	467	32	19	20	28	1.96
51372195--51372241	25	1.9	24	82	4	58	31	10	6	51	1.62
51378078--51378112	18	2.0	18	88	5	54	42	17	11	28	1.83
51379974--51380016	21	2.0	20	86	8	59	44	6	9	39	1.64
51385777--51385802	3	8.7	3	100	0	52	30	34	0	34	1.58
51389018--51389090	39	1.9	37	86	8	103	30	10	20	38	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51399312--51399353	21	2.0	20	86	4	57	66	0	2	30	1.04
51402259--51402303	18	2.5	18	92	0	72	35	13	8	42	1.75
51402732--51402868	72	1.9	72	92	0	229	24	4	14	56	1.57
51402736--51402922	72	2.6	72	83	4	191	27	4	13	55	1.57
51408179--51408256	40	2.0	40	89	0	120	24	28	26	20	1.99
51408183--51408277	40	2.4	40	82	3	111	24	27	27	21	1.99
51408489--51409054	124	4.5	124	85	3	706	31	16	22	30	1.96
51412274--51412451	27	6.6	27	84	3	205	29	28	15	26	1.96
51412295--51412450	82	1.9	81	88	3	233	29	28	15	26	1.96
51566646--51566870	40	5.6	40	85	2	290	23	27	24	25	2.00
51566610--51566870	80	3.3	80	83	3	303	23	26	24	25	2.00
51569468--51569521	27	2.0	27	89	10	83	27	24	3	44	1.70
51569746--51570498	160	4.8	156	77	13	667	29	13	10	46	1.76
51569746--51570352	305	2.0	312	81	10	719	29	13	10	46	1.77
51570041--51570480	164	2.7	158	78	11	450	29	13	10	46	1.76
51570576--51571148	161	3.6	163	82	7	661	29	12	8	48	1.71
51570567--51571148	322	1.8	321	81	8	743	29	12	8	48	1.71
51570568--51571140	160	3.6	161	82	7	650	29	12	8	48	1.71
51575828--51575895	17	4.0	17	72	0	64	22	30	19	27	1.97
51575987--51576039	13	3.9	13	78	9	61	24	33	18	22	1.97
51575981--51576040	28	2.1	28	96	0	111	26	33	16	23	1.96
51575974--51576026	15	3.7	15	77	10	56	28	30	18	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51576905--51576937	13	2.6	13	90	4	50	42	18	0	39	1.50
51581285--51581366	16	5.2	16	70	22	59	57	2	0	40	1.12
51581290--51581364	28	2.7	26	78	15	69	58	2	0	38	1.12
51581763--51581802	11	3.6	12	90	9	59	42	5	0	52	1.23
51581785--51581825	9	4.7	9	84	6	57	34	0	0	65	0.93
51581757--51581876	49	2.5	48	82	8	145	37	3	0	58	1.21
51581763--51581831	11	6.8	11	79	15	53	40	2	0	56	1.14
51581774--51581907	39	3.4	39	86	8	157	35	2	0	61	1.13
51582488--51582522	17	2.0	18	88	5	54	51	0	0	48	1.00
51582479--51582525	18	2.6	18	83	10	60	48	0	0	51	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199