genome.fa.s18.2.7.7.80.10.50.1000.150.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  150  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49715517--49715591	21	3.5	21	74	17	66	62	5	1	30	1.25
49715517--49715620	21	4.9	21	69	18	56	58	5	3	31	1.40
49716194--49716238	22	2.0	22	86	4	63	37	17	6	37	1.76
49716217--49716282	19	3.5	19	87	0	105	37	12	9	40	1.74
49716615--49716946	132	2.5	132	91	2	519	29	24	17	28	1.97
49717726--49717758	14	2.3	15	89	5	50	24	30	15	30	1.95
49718574--49718640	26	2.5	26	79	13	66	56	7	14	20	1.62
49721371--49721454	22	3.8	22	73	22	68	61	5	1	30	1.27
49721377--49721483	21	4.9	21	71	15	58	59	5	3	30	1.38
49722053--49722097	22	2.0	22	86	4	63	37	17	6	37	1.76
49722053--49722186	19	6.8	19	84	3	142	39	13	7	39	1.73
49722076--49722179	38	2.7	38	95	0	181	39	11	7	41	1.70
49760124--49760342	39	5.6	39	83	0	276	32	31	19	16	1.95
49760128--49760339	78	2.7	78	86	0	307	32	30	19	17	1.95
49774027--49774067	20	2.0	20	90	0	64	51	2	7	39	1.43
49775268--49775426	39	4.1	39	80	0	138	31	28	17	22	1.96
49775279--49775426	78	1.9	78	80	0	170	31	28	18	21	1.97
49775750--49775791	18	2.4	18	84	4	50	42	11	2	42	1.54
49785951--49786175	79	2.8	80	86	6	287	25	22	27	24	2.00
49785951--49786175	119	1.9	120	83	6	296	25	22	27	24	2.00
49785951--49786175	40	5.7	40	83	5	278	25	22	27	24	2.00
49791619--49791663	20	2.2	20	84	0	54	51	13	13	22	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49804148--49804273	28	4.5	28	86	2	164	27	12	26	32	1.93
49804176--49804286	28	4.0	27	85	3	98	30	11	24	33	1.91
49810740--49810924	40	4.7	40	78	10	184	25	21	27	25	2.00
49810793--49810957	79	2.1	79	80	8	176	27	20	26	25	1.99
49813013--49813054	22	1.9	22	90	0	66	45	14	19	21	1.85
49813066--49813224	32	5.0	32	77	0	147	38	18	18	25	1.93
49813066--49813224	64	2.5	64	81	2	167	38	18	18	25	1.93
49813228--49813277	26	1.9	26	91	0	82	42	26	18	14	1.87
49813490--49813954	27	17.6	26	82	6	436	25	18	18	36	1.94
49813473--49813954	53	9.1	53	79	7	432	25	19	18	36	1.94
49818310--49818347	12	3.2	12	100	0	76	52	23	0	23	1.47
49827369--49827544	53	3.3	53	81	5	194	28	29	14	27	1.95
49827369--49827544	27	6.6	27	84	4	187	28	29	14	27	1.95
49835409--49835586	27	6.6	27	82	6	171	28	29	15	27	1.96
49835409--49835586	54	3.3	54	83	3	205	28	29	15	27	1.96
49839926--49839966	21	1.9	22	85	5	57	21	2	26	48	1.63
49840512--49840597	18	4.9	17	73	21	79	29	6	0	63	1.20
49842733--49842863	64	2.0	64	97	0	244	43	5	4	46	1.47
49845069--49845117	22	2.1	23	92	7	82	30	14	24	30	1.94
49845228--49845270	23	1.9	23	90	4	70	41	13	9	34	1.77
49847917--49848357	221	2.0	221	88	0	657	32	20	13	33	1.91
49851685--49851742	21	2.8	21	76	7	55	44	25	13	15	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49852190--49852226	18	2.1	18	89	0	56	29	18	24	27	1.98
49854731--49854772	22	1.9	22	90	0	66	30	16	19	33	1.94
49854753--49854872	49	2.4	51	80	8	138	33	22	15	29	1.94
49855613--49855637	7	3.6	7	100	0	50	72	0	0	28	0.86
49867312--49867386	10	7.5	10	76	13	66	53	0	0	46	1.00
49867315--49867347	9	3.6	9	92	8	57	60	0	0	39	0.97
49867672--49867697	3	8.7	3	100	0	52	30	0	0	69	0.89
49868462--49868537	29	2.7	28	82	10	84	57	3	0	38	1.17
49868539--49868589	17	2.8	18	77	19	52	64	1	1	31	1.15
49868707--49868824	10	11.8	10	67	13	55	31	3	5	60	1.35
49871351--49871411	25	2.4	25	81	10	70	44	0	8	47	1.33
49873936--49873983	17	2.7	18	80	9	53	52	0	2	45	1.12
49873982--49874036	23	2.4	23	75	6	58	63	12	9	14	1.51
49874088--49874132	16	2.9	15	83	9	54	71	4	0	24	1.05
49878260--49878296	17	2.2	17	100	0	74	45	0	24	29	1.53
49881218--49881246	8	3.6	8	100	0	58	24	0	0	75	0.80
49883045--49883240	96	2.1	96	88	0	286	35	12	18	34	1.88
49887859--49887892	17	2.1	16	88	5	50	76	2	11	8	1.12
49888841--49889349	128	4.0	128	91	0	788	25	23	19	31	1.98
49889276--49889370	44	2.2	44	81	7	104	29	27	14	28	1.95
49889290--49889374	44	1.9	44	85	4	118	29	24	18	27	1.98
49890615--49890660	21	2.2	21	88	7	67	10	17	0	71	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49890622--49890661	7	5.7	7	88	11	64	12	15	0	72	1.12
49896345--49896393	6	8.7	6	84	8	50	14	6	8	71	1.29
49896368--49896397	15	2.0	15	100	0	60	13	0	6	80	0.91
49904564--49904606	17	2.5	17	76	3	50	60	2	0	37	1.10
49905346--49905582	94	2.6	89	83	4	267	38	16	11	33	1.85
49905417--49905581	90	1.8	89	85	3	233	37	18	10	33	1.85
49905680--49905726	17	2.8	17	75	18	53	78	0	0	21	0.75
49905680--49905756	27	2.9	28	77	11	81	71	1	0	27	0.94
49905708--49905793	28	3.2	27	82	11	88	65	1	1	32	1.08
49905968--49905993	13	2.0	13	100	0	52	23	0	0	76	0.78
49906011--49906082	9	7.5	10	79	11	64	36	1	1	61	1.14
49907137--49907233	43	2.3	42	87	5	126	51	12	11	24	1.72
49907156--49907240	43	2.0	43	100	0	170	49	12	11	25	1.75
49908039--49908071	3	11.0	3	100	0	66	66	0	0	33	0.92
49908103--49908137	12	2.9	12	87	12	54	74	8	8	8	1.23
49909305--49909346	19	2.3	19	91	4	68	11	7	7	73	1.23
49909981--49910471	88	5.4	89	71	10	309	27	20	19	31	1.97
49909861--49910379	226	2.3	226	90	0	797	27	20	21	31	1.98
49909981--49910471	44	10.8	45	74	11	263	27	20	19	31	1.97
49910210--49910521	44	6.8	48	73	11	174	27	20	20	31	1.98
49909984--49910521	138	3.9	134	75	11	351	27	20	20	31	1.97
49910343--49910554	48	4.5	47	77	5	135	26	19	19	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49927144--49927898	114	6.5	116	84	2	905	28	20	24	26	1.99
49927722--49928084	190	1.9	186	89	3	557	25	19	25	28	1.99
49927839--49927978	73	1.9	73	94	0	244	26	18	25	29	1.98
49927884--49928248	113	3.2	113	81	4	400	25	18	24	30	1.98
49928512--49928573	21	2.9	21	78	7	63	22	0	32	45	1.53
49928538--49928588	15	3.5	15	75	5	50	21	0	35	43	1.53
49928569--49928608	20	2.0	21	95	5	73	17	0	32	50	1.47
49928566--49928609	7	6.3	7	82	10	54	18	0	36	45	1.49
49928873--49928905	14	2.3	15	89	5	50	21	0	39	39	1.53
49928873--49928935	21	3.0	21	79	9	74	28	0	34	36	1.58
49928924--49928952	14	2.0	15	93	6	51	20	0	44	34	1.52
49928916--49928960	22	2.0	22	86	0	63	26	0	42	31	1.56
49933960--49934018	16	3.9	14	74	26	50	1	28	1	67	1.10
49933965--49934018	17	3.1	17	82	12	65	1	27	1	68	1.10
49944317--49944367	23	2.3	23	96	3	95	39	0	27	33	1.57
49945590--49945779	51	3.8	50	85	3	238	31	27	15	25	1.96
49945595--49945779	102	1.8	101	85	3	264	31	28	15	24	1.96
49954738--49954779	22	1.9	22	90	0	66	28	40	0	30	1.57
49971833--49972067	113	2.1	113	97	0	445	29	16	11	42	1.83
49977328--49977368	3	13.7	3	100	0	82	65	0	0	34	0.93
49977505--49977562	20	3.0	19	82	10	64	43	0	1	55	1.10
49977532--49977571	20	2.0	20	90	0	62	40	0	2	57	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49978803--49978956	60	2.6	61	83	6	181	40	16	18	24	1.91
49979518--49979557	20	2.0	20	90	4	64	37	0	7	55	1.29
49979520--49979578	19	3.1	18	81	16	57	37	0	10	52	1.35
49979729--49979768	14	2.7	15	80	11	55	47	17	5	30	1.69
49983209--49983316	53	2.0	54	89	5	166	22	20	20	37	1.95
49983256--49983296	18	2.3	18	82	0	55	24	26	17	31	1.97
49988765--49988800	18	1.9	19	88	5	56	55	5	0	38	1.23
49989231--49989263	17	2.0	17	94	5	59	54	0	0	45	0.99
49992236--49992396	38	4.2	38	83	1	198	12	19	31	37	1.89
49992373--49992412	16	2.5	16	92	8	64	10	15	30	45	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199